Rroxscaffold_4G00326160

Subtilisin-like serine endopeptidase family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000257
Physical Location & Seq
Forward (+)
58154421 .. 58156561
2141 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00326160.1

Sequence Viewer

Length: 903 bp
ATGGAGAAGATGCTAGTGTCGGTGCTTGGAACTGAAACTCGGGCAGTGGGTATAGATCACCGCCGCAGATCGGAAAGCAAGGACAGCAGGGAACTTTGTAAAAGATGTGCGCTTTTATGGACTAGCACAAGGTACCGCAAGAGGAGGAGTTCCTCTGCTAGAGTTGCTGCATATAGTGTTTGCAGTGCAGACGGGTGCAAATCATACTATATCCTGGCTGCTTTTGATGATGTTATTGCTGATGGAGTTGACATCATTACAGTTTCACTTGGAGCATCTTCGGCAATTCCAATCACTCACGATCCTATAGCGATTGGTTCTTATCATGCAATACAAAAAGGGATACTAACCACAAATGTTGCGGGCAACAATGGTCCTATTGGTAGTACTGTCTCAAGTGTTGCACCATGGATGCTCACAGTTGCGGCTAGTAGCATAGATCGTGGGATCATTGACAAGGTTGTTCTTGGAAATGGAAGGACACTTGTTGGAAATTCTGTCAACTCTTTCACTTCAAATGAAACAGGTTTTCCAATAGTAGAGGGAAAAGATGTTCGTAATAAACATTGCACTGAAGTCCAAGCTGGGCATTGTGAAGATTATTTGTGCATAGATAATGATGTGGTAAAAGGAAAGATTGTGTTATGCGATGAATTAACTGGAAATCTTAAGGCCCGTAGAGCTGCAGTAGCTTTAAGGGATGAAGGGTATAATGTTGTATTAAGAAGTGAAATTATAAAAGATGTTTTTGCACCTATGGTTGCTTCCTTCTCATCACGTGGGCCAAATAAATTTTTACTTGAAATTATAAAGCCAGATGTAAGTGCCCCGGGGTTGATAAGTTGGCAACATATTCACCTGTTGCCCCTATCACAAAGAGCGCTGAAGACAAGCGGCGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 PA Peptidase_S8

Protein Analysis

300

Amino Acids

32.34

Weight (kDa)

8.87

Isoelectric Point (pI)

37.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S8 PF00082 52 - 282 5.4e-12 Subtilase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000257)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46840 AT3G46850 AT5G58820 AT5G58830 AT5G58840 AT5G58840 AT5G58840 AT5G59090 AT5G59090 AT5G59090 AT5G59100 AT5G59120 AT5G59130 AT5G59130 AT5G59130 AT5G59130 AT5G59190
fragaria_vesca FvH4_3g37170 FvH4_7g02830 FvH4_7g02840
malus_domestica MD02G1288900.v1.1 MD02G1289100.v1.1 MD02G1289300.v1.1 MD02G1289400.v1.1 MD02G1289500.v1.1 MD03G1083800.v1.1 MD03G1084000.v1.1 MD07G1037500.v1.1 MD07G1037600.v1.1 MD07G1037700.v1.1 MD07G1039300.v1.1 MD11G1091900.v1.1 MD11G1092000.v1.1
prunus_persica Prupe.2G032800_v2.0.a1 Prupe.2G033000_v2.0.a1 Prupe.2G033100_v2.0.a1 Prupe.2G035100_v2.0.a1 Prupe.6G067600_v2.0.a1 Prupe.6G067600_v2.0.a1 Prupe.6G067700_v2.0.a1 Prupe.6G067800_v2.0.a1
pyrus_communis pycom02g24440 pycom02g24470 pycom02g24480 pycom02g24500 pycom02g24510 pycom03g06650 pycom07g02730 pycom11g07710 pycom11g07720
rosa_chinensis RchiOBHm_Chr1g0323281 RchiOBHm_Chr1g0323291 RchiOBHm_Chr1g0323311 RchiOBHm_Chr1g0323341 RchiOBHm_Chr1g0323351 RchiOBHm_Chr1g0323371 RchiOBHm_Chr1g0323431 RchiOBHm_Chr1g0323461 RchiOBHm_Chr1g0324031 RchiOBHm_Chr5g0066891 RchiOBHm_Chr5g0066901
rosa_laevigata RLG00000030004 RLG00000030235 RLG00000030328 RLG00000030329 RLG00000030334 RLG00000030336 RLG00000030337 RLG00000030338 RLG00000030339 RLG00000030340 RLG00000035885 RLG00000035886 RLG00000035888 RLG00000035890
rosa_multiflora Rmu_co8481685.1_g000001 Rmu_co8485349.1_g000001 Rmu_sc0000605.1_g000061 Rmu_sc0000804.1_g000004 Rmu_sc0000804.1_g000008 Rmu_sc0002263.1_g000074 Rmu_sc0002263.1_g000076 Rmu_sc0002263.1_g000077 Rmu_sc0003418.1_g000005 Rmu_sc0003418.1_g000007 Rmu_sc0003418.1_g000008 Rmu_sc0008378.1_g000013 Rmu_sc0010151.1_g000012
rosa_roxburghii Rroxscaffold_1G00014220 Rroxscaffold_1G00014230 Rroxscaffold_4G00325970 Rroxscaffold_4G00326160 Rroxscaffold_4G00326570 Rroxscaffold_4G00326580 Rroxscaffold_4G00326650 Rroxscaffold_4G00326670 Rroxscaffold_4G00326680 Rroxscaffold_4G00326700
rosa_rugosa Rorug01G0037300 Rorug01G0037400 Rorug01G0037600 Rorug01G0037700 Rorug01G0037800 Rorug01G0037800 Rorug01G0042100 Rorug01G0065000 Rorug05G0379300 Rorug05G0379400
rosa_samantha Rh1AG054700 Rh1AG054900 Rh1AG055000 Rh1AG055200 Rh1AG055300 Rh1BG047500 Rh1CG055800 Rh1CG056000 Rh1CG061400 Rh1DG059900 Rh1DG060200 Rh5AG439100 Rh5AG439200 Rh5BG455900 Rh5CG478000 Rh5CG478300
rosa_wichuraiana Rw1G004750 Rw1G004760 Rw1G004770 Rw1G004790 Rw1G005080 Rw1G006510 Rw5G041060 Rw5G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 737, 809
Acc65I GGTACC 1 cut(s) 132
AccB1I GGYRCC 1 cut(s) 132
AciI CCGC 6 cut(s) 61, 64, 136, 362, 425, 894
AclWI GGATC 2 cut(s) 296, 455
AcsI RAATTY 2 cut(s) 493, 791
AcuI CTGAAG 1 cut(s) 594
AcvI CACGTG 1 cut(s) 779
AfaI GTAC 2 cut(s) 134, 388
AfeI AGCGCT 1 cut(s) 882
AfiI CCNNNNNNNGG 1 cut(s) 70
AflII CTTAAG 1 cut(s) 668
AgsI TTSAA 2 cut(s) 516, 803
AjnI CCWGG 1 cut(s) 213
AloI GAACNNNNNNTCC 2 cut(s) 537, 569
AluBI AGCT 3 cut(s) 584, 683, 692
AluI AGCT 3 cut(s) 584, 683, 692
Alw26I GTCTC 1 cut(s) 397
AlwI GGATC 2 cut(s) 296, 455
Ama87I CYCGRG 2 cut(s) 39, 829
Aor51HI AGCGCT 1 cut(s) 882
AoxI GGCC 2 cut(s) 672, 782
ApeKI GCWGC 3 cut(s) 167, 218, 683
ApoI RAATTY 2 cut(s) 493, 791
Asp718I GGTACC 1 cut(s) 132
AspLEI GCGC 2 cut(s) 112, 883
AspS9I GGNCC 3 cut(s) 374, 673, 782
AsuC2I CCSGG 2 cut(s) 830, 831
AsuHPI GGTGA 2 cut(s) 50, 848
AvaI CYCGRG 2 cut(s) 39, 829
AvaII GGWCC 1 cut(s) 374
BaeGI GKGCMC 1 cut(s) 829
BanI GGYRCC 1 cut(s) 132
BbrPI CACGTG 1 cut(s) 779
BbsI GAAGAC 1 cut(s) 893
BbvI GCAGC 3 cut(s) 154, 205, 670
BccI CCATC 1 cut(s) 236
BciT130I CCWGG 1 cut(s) 215
BciVI GTATCC 1 cut(s) 336
BcnI CCSGG 2 cut(s) 830, 831
BcoDI GTCTC 1 cut(s) 397
BfaI CTAG 4 cut(s) 14, 123, 159, 429
BfmI CTRYAG 2 cut(s) 306, 684
BfoI RGCGCY 1 cut(s) 884
BfrI CTTAAG 1 cut(s) 668
BfuI GTATCC 1 cut(s) 336
BisI GCNGC 6 cut(s) 64, 168, 219, 426, 684, 895
BlsI GCNGC 6 cut(s) 65, 169, 220, 427, 685, 896
BmcAI AGTACT 1 cut(s) 388
Bme1390I CCNGG 3 cut(s) 215, 830, 831
Bme18I GGWCC 1 cut(s) 374
BmeT110I CYCGRG 2 cut(s) 39, 829
BmgT120I GGNCC 3 cut(s) 374, 673, 782
BmiI GGNNCC 1 cut(s) 134
BmrFI CCNGG 3 cut(s) 215, 830, 831
BmsI GCATC 2 cut(s) 284, 402
BpiI GAAGAC 1 cut(s) 893
BpuEI CTTGAG 1 cut(s) 379
BpuMI CCSGG 2 cut(s) 830, 831
BsaAI YACGTR 1 cut(s) 779
BsaJI CCNNGG 4 cut(s) 407, 828, 829, 830
Bsc4I CCNNNNNNNGG 1 cut(s) 70
Bse1I ACTGG 1 cut(s) 664
Bse3DI GCAATG 1 cut(s) 565
BseBI CCWGG 1 cut(s) 215
BseDI CCNNGG 4 cut(s) 407, 828, 829, 830
BseGI GGATG 2 cut(s) 417, 706
BseLI CCNNNNNNNGG 1 cut(s) 70
BseMI GCAATG 1 cut(s) 565
BseNI ACTGG 1 cut(s) 664
BseRI GAGGAG 2 cut(s) 157, 160
BseSI GKGCMC 1 cut(s) 829
BseXI GCAGC 3 cut(s) 154, 205, 670
BseYI CCCAGC 1 cut(s) 584
BsgI GTGCAG 1 cut(s) 207
BshFI GGCC 2 cut(s) 674, 784
BshNI GGYRCC 1 cut(s) 132
BsiHKCI CYCGRG 2 cut(s) 39, 829
BsiSI CCGG 1 cut(s) 830
BslI CCNNNNNNNGG 1 cut(s) 70
BsmAI GTCTC 1 cut(s) 397
BsnI GGCC 2 cut(s) 674, 784
BsoBI CYCGRG 2 cut(s) 39, 829
Bsp1286I GDGCHC 1 cut(s) 829
Bsp143I GATC 5 cut(s) 55, 68, 301, 439, 447
Bsp19I CCATGG 1 cut(s) 407
BspACI CCGC 6 cut(s) 61, 64, 136, 362, 425, 894
BspANI GGCC 2 cut(s) 674, 784
BspLI GGNNCC 1 cut(s) 134
BspMAI CTGCAG 1 cut(s) 688
BspPI GGATC 2 cut(s) 296, 455
BspT107I GGYRCC 1 cut(s) 132
BspTI CTTAAG 1 cut(s) 668
BsrDI GCAATG 1 cut(s) 565
BsrI ACTGG 1 cut(s) 664
BssECI CCNNGG 4 cut(s) 407, 828, 829, 830
BssMI GATC 5 cut(s) 55, 68, 301, 439, 447
BssT1I CCWWGG 1 cut(s) 407
Bst2UI CCWGG 1 cut(s) 215
Bst4CI ACNGT 3 cut(s) 262, 391, 421
BstAFI CTTAAG 1 cut(s) 668
BstBAI YACGTR 1 cut(s) 779
BstC8I GCNNGC 1 cut(s) 364
BstDSI CCRYGG 1 cut(s) 407
BstF5I GGATG 2 cut(s) 417, 706
BstH2I RGCGCY 1 cut(s) 884
BstHHI GCGC 2 cut(s) 112, 883
BstKTI GATC 5 cut(s) 58, 71, 304, 442, 450
BstMAI GTCTC 1 cut(s) 397
BstMBI GATC 5 cut(s) 55, 68, 301, 439, 447
BstMWI GCNNNNNNNGC 5 cut(s) 84, 164, 281, 680, 689
BstNI CCWGG 1 cut(s) 215
BstSCI CCNGG 3 cut(s) 213, 828, 829
BstSFI CTRYAG 2 cut(s) 306, 684
BstSLI GKGCMC 1 cut(s) 829
BstV1I GCAGC 3 cut(s) 154, 205, 670
BstV2I GAAGAC 1 cut(s) 893
BsuI GTATCC 1 cut(s) 336
BsuRI GGCC 2 cut(s) 674, 784
BtgI CCRYGG 1 cut(s) 407
BtgZI GCGATG 1 cut(s) 663
BtsCI GGATG 2 cut(s) 417, 706
BtsI GCAGTG 2 cut(s) 51, 190
BtsIMutI CAGTG 3 cut(s) 51, 190, 570
Cac8I GCNNGC 1 cut(s) 364
CfoI GCGC 2 cut(s) 112, 883
Cfr13I GGNCC 3 cut(s) 374, 673, 782
Cfr9I CCCGGG 1 cut(s) 829
Csp6I GTAC 2 cut(s) 133, 387
CspCI CAANNNNNGTGG 2 cut(s) 340, 375
CviAII CATG 2 cut(s) 326, 408
CviJI RGCY 8 cut(s) 218, 428, 584, 674, 683, 692, 784, 814
CviKI_1 RGCY 8 cut(s) 218, 428, 584, 674, 683, 692, 784, 814
CviQI GTAC 2 cut(s) 133, 387
DpnI GATC 5 cut(s) 57, 70, 303, 441, 449
DpnII GATC 5 cut(s) 55, 68, 301, 439, 447
Eco130I CCWWGG 1 cut(s) 407
Eco47I GGWCC 1 cut(s) 374
Eco47III AGCGCT 1 cut(s) 882
Eco57I CTGAAG 1 cut(s) 594
Eco72I CACGTG 1 cut(s) 779
Eco88I CYCGRG 2 cut(s) 39, 829
EcoRII CCWGG 1 cut(s) 213
EcoT14I CCWWGG 1 cut(s) 407
ErhI CCWWGG 1 cut(s) 407
FaeI CATG 2 cut(s) 329, 411
FatI CATG 2 cut(s) 325, 407
FauI CCCGC 1 cut(s) 355
Fnu4HI GCNGC 6 cut(s) 64, 168, 219, 426, 684, 895
FokI GGATG 2 cut(s) 424, 713
Fsp4HI GCNGC 6 cut(s) 64, 168, 219, 426, 684, 895
FspBI CTAG 4 cut(s) 14, 123, 159, 429
GlaI GCGC 2 cut(s) 111, 882
GluI GCNGC 6 cut(s) 64, 168, 219, 426, 684, 895
GsaI CCCAGC 1 cut(s) 588
HaeII RGCGCY 1 cut(s) 884
HaeIII GGCC 2 cut(s) 674, 784
HapII CCGG 1 cut(s) 830
HhaI GCGC 2 cut(s) 112, 883
Hin1II CATG 2 cut(s) 329, 411
Hin6I GCGC 2 cut(s) 110, 881
HinP1I GCGC 2 cut(s) 110, 881
HincII GTYRAC 2 cut(s) 250, 502
HindII GTYRAC 2 cut(s) 250, 502
HpaII CCGG 1 cut(s) 830
HphI GGTGA 2 cut(s) 50, 848
Hpy166II GTNNAC 2 cut(s) 250, 502
Hpy188I TCNGA 1 cut(s) 73
Hpy188III TCNNGA 1 cut(s) 299
Hpy8I GTNNAC 2 cut(s) 250, 502
HpyAV CCTTC 3 cut(s) 471, 698, 778
HpyCH4III ACNGT 3 cut(s) 262, 391, 421
HpyCH4IV ACGT 1 cut(s) 778
HpyF10VI GCNNNNNNNGC 5 cut(s) 84, 164, 281, 680, 689
HpySE526I ACGT 1 cut(s) 778
Hsp92II CATG 2 cut(s) 329, 411
HspAI GCGC 2 cut(s) 110, 881
KpnI GGTACC 1 cut(s) 136
Kzo9I GATC 5 cut(s) 55, 68, 301, 439, 447
LmnI GCTCC 1 cut(s) 272
LpnPI CCDG 9 cut(s) 73, 200, 227, 510, 570, 645, 828, 843, 872
Lsp1109I GCAGC 3 cut(s) 154, 205, 670
LweI GCATC 2 cut(s) 284, 402
MaeI CTAG 4 cut(s) 14, 123, 159, 429
MaeII ACGT 1 cut(s) 778
MalI GATC 5 cut(s) 57, 70, 303, 441, 449
MboI GATC 5 cut(s) 55, 68, 301, 439, 447
MboII GAAGA 4 cut(s) 19, 270, 608, 898
MhlI GDGCHC 1 cut(s) 829
MluCI AATT 6 cut(s) 285, 493, 653, 732, 791, 804
MmeI TCCRAC 1 cut(s) 469
MnlI CCTC 4 cut(s) 135, 138, 163, 535
MseI TTAA 4 cut(s) 656, 669, 695, 722
MspCI CTTAAG 1 cut(s) 668
MspI CCGG 1 cut(s) 830
MspR9I CCNGG 3 cut(s) 215, 830, 831
MvaI CCWGG 1 cut(s) 215
MwoI GCNNNNNNNGC 5 cut(s) 84, 164, 281, 680, 689
NciI CCSGG 2 cut(s) 830, 831
NcoI CCATGG 1 cut(s) 407
NdeII GATC 5 cut(s) 55, 68, 301, 439, 447
NlaIII CATG 2 cut(s) 329, 411
NlaIV GGNNCC 1 cut(s) 134
PkrI GCNGC 6 cut(s) 65, 169, 220, 427, 685, 896
PmaCI CACGTG 1 cut(s) 779
PmlI CACGTG 1 cut(s) 779
Ppu21I YACGTR 1 cut(s) 779
PsiI TTATAA 2 cut(s) 737, 809
Psp6I CCWGG 1 cut(s) 213
PspCI CACGTG 1 cut(s) 779
PspFI CCCAGC 1 cut(s) 584
PspGI CCWGG 1 cut(s) 213
PspN4I GGNNCC 1 cut(s) 134
PspPI GGNCC 3 cut(s) 374, 673, 782
PstI CTGCAG 1 cut(s) 688
RsaI GTAC 2 cut(s) 134, 388
RsaNI GTAC 2 cut(s) 133, 387
SaqAI TTAA 4 cut(s) 656, 669, 695, 722
SatI GCNGC 6 cut(s) 64, 168, 219, 426, 684, 895
Sau3AI GATC 5 cut(s) 55, 68, 301, 439, 447
Sau96I GGNCC 3 cut(s) 374, 673, 782
ScaI AGTACT 1 cut(s) 388
ScrFI CCNGG 3 cut(s) 215, 830, 831
SduI GDGCHC 1 cut(s) 829
SetI ASST 9 cut(s) 134, 462, 529, 586, 685, 694, 757, 781, 861
SfaNI GCATC 2 cut(s) 284, 402
SfcI CTRYAG 2 cut(s) 306, 684
SinI GGWCC 1 cut(s) 374
SmaI CCCGGG 1 cut(s) 831
SmlI CTYRAG 2 cut(s) 394, 668
SmoI CTYRAG 2 cut(s) 394, 668
Sse9I AATT 6 cut(s) 285, 493, 653, 732, 791, 804
SsiI CCGC 6 cut(s) 61, 64, 136, 362, 425, 894
SspMI CTAG 4 cut(s) 14, 123, 159, 429
StyD4I CCNGG 3 cut(s) 213, 828, 829
StyI CCWWGG 1 cut(s) 407
TaaI ACNGT 3 cut(s) 262, 391, 421
TaiI ACGT 1 cut(s) 781
TasI AATT 6 cut(s) 285, 493, 653, 732, 791, 804
TatI WGTACW 1 cut(s) 386
TauI GCSGC 3 cut(s) 66, 428, 897
Tru1I TTAA 4 cut(s) 656, 669, 695, 722
Tru9I TTAA 4 cut(s) 656, 669, 695, 722
TscAI CASTG 3 cut(s) 51, 190, 577
TseI GCWGC 3 cut(s) 167, 218, 683
TspDTI ATGAA 3 cut(s) 534, 666, 717
TspMI CCCGGG 1 cut(s) 829
TspRI CASTG 3 cut(s) 51, 190, 577
Vha464I CTTAAG 1 cut(s) 668
VpaK11BI GGWCC 1 cut(s) 374
XapI RAATTY 2 cut(s) 493, 791
XmaI CCCGGG 1 cut(s) 829
XspI CTAG 4 cut(s) 14, 123, 159, 429
ZrmI AGTACT 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.