Rorug01G0037700

Subtilisin-like serine endopeptidase family protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
6228788 .. 6229129
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0037700.1

Sequence Viewer

Length: 342 bp
ATGGTTCCGATGGGGGTTGGATCGAGCAGTGGTGCAGGTGCTTGTTCTGGAAGCAAGAAGAGCAACAAGCAGCGATTTGAGCTGAAGAAGTGGAACGCAGTAAGTCTGTGGGCATGGGATATTGTGGTGGATAACTGCGCCATCTGCAGGAACCATATAATGCACCTGTGCATAGAGTGCCAAGCCAACCAGAAAAGTGTGACCAGCGAAGAATGTACGGTGGCTTGGGGAACTTGCAACCATGCCTTCCACTTCCACTGCATTAGCCGATGGCTCAAGACTCGTCAGGTCTGTCCCTTGGATAACAGCGAGTGGGAGTTCCAGAAGTATGGTCATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

113

Amino Acids

12.81

Weight (kDa)

8.1

Isoelectric Point (pI)

52.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 44 - 102 6.6e-25 RING-H2 zinc finger domain
zf-ANAPC11 PF12861 44 - 108 1.2e-12 Anaphase-promoting complex subunit 11 RING-H2 finger
zf-RING_2 PF13639 57 - 100 1.5e-06 Ring finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000257)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46840 AT3G46850 AT5G58820 AT5G58830 AT5G58840 AT5G58840 AT5G58840 AT5G59090 AT5G59090 AT5G59090 AT5G59100 AT5G59120 AT5G59130 AT5G59130 AT5G59130 AT5G59130 AT5G59190
fragaria_vesca FvH4_3g37170 FvH4_7g02830 FvH4_7g02840
malus_domestica MD02G1288900.v1.1 MD02G1289100.v1.1 MD02G1289300.v1.1 MD02G1289400.v1.1 MD02G1289500.v1.1 MD03G1083800.v1.1 MD03G1084000.v1.1 MD07G1037500.v1.1 MD07G1037600.v1.1 MD07G1037700.v1.1 MD07G1039300.v1.1 MD11G1091900.v1.1 MD11G1092000.v1.1
prunus_persica Prupe.2G032800_v2.0.a1 Prupe.2G033000_v2.0.a1 Prupe.2G033100_v2.0.a1 Prupe.2G035100_v2.0.a1 Prupe.6G067600_v2.0.a1 Prupe.6G067600_v2.0.a1 Prupe.6G067700_v2.0.a1 Prupe.6G067800_v2.0.a1
pyrus_communis pycom02g24440 pycom02g24470 pycom02g24480 pycom02g24500 pycom02g24510 pycom03g06650 pycom07g02730 pycom11g07710 pycom11g07720
rosa_chinensis RchiOBHm_Chr1g0323281 RchiOBHm_Chr1g0323291 RchiOBHm_Chr1g0323311 RchiOBHm_Chr1g0323341 RchiOBHm_Chr1g0323351 RchiOBHm_Chr1g0323371 RchiOBHm_Chr1g0323431 RchiOBHm_Chr1g0323461 RchiOBHm_Chr1g0324031 RchiOBHm_Chr5g0066891 RchiOBHm_Chr5g0066901
rosa_laevigata RLG00000030004 RLG00000030235 RLG00000030328 RLG00000030329 RLG00000030334 RLG00000030336 RLG00000030337 RLG00000030338 RLG00000030339 RLG00000030340 RLG00000035885 RLG00000035886 RLG00000035888 RLG00000035890
rosa_multiflora Rmu_co8481685.1_g000001 Rmu_co8485349.1_g000001 Rmu_sc0000605.1_g000061 Rmu_sc0000804.1_g000004 Rmu_sc0000804.1_g000008 Rmu_sc0002263.1_g000074 Rmu_sc0002263.1_g000076 Rmu_sc0002263.1_g000077 Rmu_sc0003418.1_g000005 Rmu_sc0003418.1_g000007 Rmu_sc0003418.1_g000008 Rmu_sc0008378.1_g000013 Rmu_sc0010151.1_g000012
rosa_roxburghii Rroxscaffold_1G00014220 Rroxscaffold_1G00014230 Rroxscaffold_4G00325970 Rroxscaffold_4G00326160 Rroxscaffold_4G00326570 Rroxscaffold_4G00326580 Rroxscaffold_4G00326650 Rroxscaffold_4G00326670 Rroxscaffold_4G00326680 Rroxscaffold_4G00326700
rosa_rugosa Rorug01G0037300 Rorug01G0037400 Rorug01G0037600 Rorug01G0037700 Rorug01G0037800 Rorug01G0037800 Rorug01G0042100 Rorug01G0065000 Rorug05G0379300 Rorug05G0379400
rosa_samantha Rh1AG054700 Rh1AG054900 Rh1AG055000 Rh1AG055200 Rh1AG055300 Rh1BG047500 Rh1CG055800 Rh1CG056000 Rh1CG061400 Rh1DG059900 Rh1DG060200 Rh5AG439100 Rh5AG439200 Rh5BG455900 Rh5CG478000 Rh5CG478300
rosa_wichuraiana Rw1G004750 Rw1G004760 Rw1G004770 Rw1G004790 Rw1G005080 Rw1G006510 Rw5G041060 Rw5G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 26
Acc36I ACCTGC 1 cut(s) 26
AclWI GGATC 1 cut(s) 28
AcuI CTGAAG 1 cut(s) 104
AfaI GTAC 1 cut(s) 217
AfiI CCNNNNNNNGG 1 cut(s) 147
AluBI AGCT 1 cut(s) 82
AluI AGCT 1 cut(s) 82
AlwI GGATC 1 cut(s) 28
ApeKI GCWGC 1 cut(s) 70
AspLEI GCGC 1 cut(s) 140
BbvI GCAGC 1 cut(s) 82
BccI CCATC 3 cut(s) 4, 149, 264
BfmI CTRYAG 1 cut(s) 145
BfuAI ACCTGC 1 cut(s) 26
BisI GCNGC 1 cut(s) 71
BlsI GCNGC 1 cut(s) 72
BmiI GGNNCC 2 cut(s) 6, 152
BpuEI CTTGAG 1 cut(s) 260
BsaJI CCNNGG 1 cut(s) 297
Bsc4I CCNNNNNNNGG 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 297
BseLI CCNNNNNNNGG 1 cut(s) 147
BseXI GCAGC 1 cut(s) 82
BsgI GTGCAG 1 cut(s) 54
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 1 cut(s) 147
BsmFI GGGAC 1 cut(s) 279
Bsp143I GATC 1 cut(s) 20
BspHI TCATGA 1 cut(s) 334
BspLI GGNNCC 2 cut(s) 6, 152
BspMAI CTGCAG 1 cut(s) 149
BspMI ACCTGC 1 cut(s) 26
BspPI GGATC 1 cut(s) 28
BspQI GCTCTTC 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 1 cut(s) 20
BssT1I CCWWGG 1 cut(s) 297
Bst4CI ACNGT 1 cut(s) 220
Bst6I CTCTTC 1 cut(s) 53
BstAPI GCANNNNNTGC 1 cut(s) 177
BstHHI GCGC 1 cut(s) 140
BstKTI GATC 1 cut(s) 23
BstMBI GATC 1 cut(s) 20
BstMWI GCNNNNNNNGC 4 cut(s) 60, 79, 144, 177
BstSFI CTRYAG 1 cut(s) 145
BstV1I GCAGC 1 cut(s) 82
BstXI CCANNNNNNTGG 1 cut(s) 329
BtsI GCAGTG 2 cut(s) 34, 256
BtsIMutI CAGTG 2 cut(s) 34, 256
BveI ACCTGC 1 cut(s) 26
CciI TCATGA 1 cut(s) 334
CfoI GCGC 1 cut(s) 140
Csp6I GTAC 1 cut(s) 216
CviAII CATG 3 cut(s) 114, 242, 335
CviJI RGCY 5 cut(s) 82, 185, 224, 267, 274
CviKI_1 RGCY 5 cut(s) 82, 185, 224, 267, 274
CviQI GTAC 1 cut(s) 216
DpnI GATC 1 cut(s) 22
DpnII GATC 1 cut(s) 20
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 297
Eco57I CTGAAG 1 cut(s) 104
EcoT14I CCWWGG 1 cut(s) 297
ErhI CCWWGG 1 cut(s) 297
FaeI CATG 3 cut(s) 117, 245, 338
FaiI YATR 7 cut(s) 115, 156, 158, 173, 243, 330, 336
FaqI GGGAC 1 cut(s) 279
FatI CATG 3 cut(s) 113, 241, 334
Fnu4HI GCNGC 1 cut(s) 71
Fsp4HI GCNGC 1 cut(s) 71
GlaI GCGC 1 cut(s) 139
GluI GCNGC 1 cut(s) 71
HhaI GCGC 1 cut(s) 140
Hin1II CATG 3 cut(s) 117, 245, 338
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HinfI GANTC 1 cut(s) 280
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 4 cut(s) 48, 277, 322, 335
HpyAV CCTTC 1 cut(s) 256
HpyCH4III ACNGT 1 cut(s) 220
HpyCH4V TGCA 6 cut(s) 35, 147, 163, 171, 237, 261
HpyF10VI GCNNNNNNNGC 4 cut(s) 60, 79, 144, 177
Hsp92II CATG 3 cut(s) 117, 245, 338
HspAI GCGC 1 cut(s) 138
Kzo9I GATC 1 cut(s) 20
LguI GCTCTTC 1 cut(s) 53
LpnPI CCDG 8 cut(s) 21, 33, 133, 179, 203, 217, 272, 335
Lsp1109I GCAGC 1 cut(s) 82
MaeIII GTNAC 1 cut(s) 199
MalI GATC 1 cut(s) 22
MboI GATC 1 cut(s) 20
MboII GAAGA 3 cut(s) 70, 97, 221
MlyI GAGTC 1 cut(s) 274
MseI TTAA 1 cut(s) 340
MwoI GCNNNNNNNGC 4 cut(s) 60, 79, 144, 177
NdeII GATC 1 cut(s) 20
NlaIII CATG 3 cut(s) 117, 245, 338
NlaIV GGNNCC 2 cut(s) 6, 152
NmuCI GTSAC 1 cut(s) 199
PagI TCATGA 1 cut(s) 334
PaqCI CACCTGC 1 cut(s) 26
PciSI GCTCTTC 1 cut(s) 53
PkrI GCNGC 1 cut(s) 72
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
PspN4I GGNNCC 2 cut(s) 6, 152
PstI CTGCAG 1 cut(s) 149
RsaI GTAC 1 cut(s) 217
RsaNI GTAC 1 cut(s) 216
SapI GCTCTTC 1 cut(s) 53
SaqAI TTAA 1 cut(s) 340
SatI GCNGC 1 cut(s) 71
Sau3AI GATC 1 cut(s) 20
SchI GAGTC 1 cut(s) 274
SetI ASST 4 cut(s) 40, 84, 168, 291
SfcI CTRYAG 1 cut(s) 145
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
StyI CCWWGG 1 cut(s) 297
TaaI ACNGT 1 cut(s) 220
TaqI TCGA 1 cut(s) 23
Tru1I TTAA 1 cut(s) 340
Tru9I TTAA 1 cut(s) 340
TscAI CASTG 2 cut(s) 34, 263
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 1 cut(s) 70
Tsp45I GTSAC 1 cut(s) 199
TspRI CASTG 2 cut(s) 34, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.