RchiOBHm_Chr1g0323461

Subtilisin-like serine endopeptidase family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000257
Physical Location & Seq
Reverse (-)
10944163 .. 10945417
1255 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55337

Sequence Viewer

Length: 1188 bp
ATGAAAACAGAACGGTCCACATTGTGTACCTTGGTTCACTTCCTGATAAGTACACCAATGTCTCACCACCTTGGTTTACTCCAAAAAGTTGTCGAGAGCAACTCCGTGGCAAATTTCTTAGCAAGAAGTTACAAAAGGAGCTTCAGTGGATTTGCTGCAAAGCTCATTGACCGCGAAATAGAGAGGCTTGCTAACATGAAGGAAGTAGTCTCTGTCTTTCTGAGCAGAATTCTACATCCTCGAACAACAAGATCTTGGGACTTTATTGGTTTCAACGAGAATAAAATGGAATGGCACTTTAAAGATGAAAGTTTTGGTCCTCCTCCCAAGAAGTGGAAAGGTGGTTGTGCAGGTGGCACAAATTTCACCTGCAACAAGAAGCTCATCGGAGCTAGGTTTTACAATTTCTCATTTGTGAGGGATGAACAAGGACATGGAACCCATACTGCCTTAATGGTAGCGGGGATTACCGTACATGATGTGAGCTTTTATGGATTAGCACAAGGTACTGCAACGGGAGGCGTTCCCTCAGCAAGAATTGCAGCATATAAAGTCTGCAATGCCGAAGGGTGCTCTACAGAGGCTATCTTGGCTACTTTTGATGATGCTATTGCAGATGGAGTTGACATAATTACGATTTCAATTAATAGCCCTAGTGTAGTTGCTTTCGAGAAAGATCCTATATCAATTGGTGCTTTTCATGCAATGGAGAAGGGGATACTAACAACAAACTCAGTAGGCAATGGTGGTCCTTTTGATGGAAGTGTAGCAAGTGTAGCACCATGGATGCTAACAGTTGCAGCAAGTACAATAGATCGACGGATCATTGACAAGGTGATTCTTGGAAATGGAAAAACATTAGTCGTGGCGTTGGTAAACTCTTTCACATTAAATGGAACAAGTTTTCCATTGATTTATGGAAATGGCGCTTCAAGTCGATGCTCAAACTTCAGTACTAGGACTTGTATGGATGGCTTCTTAGATAGTGATTTAGTTAAGGGAAAGGTTTTGTTATGTGATGAGTCAGATGGAGCTAATGGGGCCTTTCTTTCTGGAGCAGTAGGTTCAATTATGAAAGTTGATTGGGATGACTATTCTCTAGTTCCCCCACTTCCTGCAACGAGTTTGAGCCTCAATAACCGTAATGTGATCAAGTCCTACATAACTCCACGAAAGATCCTCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 PA Peptidase_S8

Protein Analysis

395

Amino Acids

42.63

Weight (kDa)

8.35

Isoelectric Point (pI)

28.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I9 PF05922 19 - 79 1.4e-09 Peptidase inhibitor I9
Peptidase_S8 PF00082 137 - 306 5.1e-14 Subtilase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000257)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46840 AT3G46850 AT5G58820 AT5G58830 AT5G58840 AT5G58840 AT5G58840 AT5G59090 AT5G59090 AT5G59090 AT5G59100 AT5G59120 AT5G59130 AT5G59130 AT5G59130 AT5G59130 AT5G59190
fragaria_vesca FvH4_3g37170 FvH4_7g02830 FvH4_7g02840
malus_domestica MD02G1288900.v1.1 MD02G1289100.v1.1 MD02G1289300.v1.1 MD02G1289400.v1.1 MD02G1289500.v1.1 MD03G1083800.v1.1 MD03G1084000.v1.1 MD07G1037500.v1.1 MD07G1037600.v1.1 MD07G1037700.v1.1 MD07G1039300.v1.1 MD11G1091900.v1.1 MD11G1092000.v1.1
prunus_persica Prupe.2G032800_v2.0.a1 Prupe.2G033000_v2.0.a1 Prupe.2G033100_v2.0.a1 Prupe.2G035100_v2.0.a1 Prupe.6G067600_v2.0.a1 Prupe.6G067600_v2.0.a1 Prupe.6G067700_v2.0.a1 Prupe.6G067800_v2.0.a1
pyrus_communis pycom02g24440 pycom02g24470 pycom02g24480 pycom02g24500 pycom02g24510 pycom03g06650 pycom07g02730 pycom11g07710 pycom11g07720
rosa_chinensis RchiOBHm_Chr1g0323281 RchiOBHm_Chr1g0323291 RchiOBHm_Chr1g0323311 RchiOBHm_Chr1g0323341 RchiOBHm_Chr1g0323351 RchiOBHm_Chr1g0323371 RchiOBHm_Chr1g0323431 RchiOBHm_Chr1g0323461 RchiOBHm_Chr1g0324031 RchiOBHm_Chr5g0066891 RchiOBHm_Chr5g0066901
rosa_laevigata RLG00000030004 RLG00000030235 RLG00000030328 RLG00000030329 RLG00000030334 RLG00000030336 RLG00000030337 RLG00000030338 RLG00000030339 RLG00000030340 RLG00000035885 RLG00000035886 RLG00000035888 RLG00000035890
rosa_multiflora Rmu_co8481685.1_g000001 Rmu_co8485349.1_g000001 Rmu_sc0000605.1_g000061 Rmu_sc0000804.1_g000004 Rmu_sc0000804.1_g000008 Rmu_sc0002263.1_g000074 Rmu_sc0002263.1_g000076 Rmu_sc0002263.1_g000077 Rmu_sc0003418.1_g000005 Rmu_sc0003418.1_g000007 Rmu_sc0003418.1_g000008 Rmu_sc0008378.1_g000013 Rmu_sc0010151.1_g000012
rosa_roxburghii Rroxscaffold_1G00014220 Rroxscaffold_1G00014230 Rroxscaffold_4G00325970 Rroxscaffold_4G00326160 Rroxscaffold_4G00326570 Rroxscaffold_4G00326580 Rroxscaffold_4G00326650 Rroxscaffold_4G00326670 Rroxscaffold_4G00326680 Rroxscaffold_4G00326700
rosa_rugosa Rorug01G0037300 Rorug01G0037400 Rorug01G0037600 Rorug01G0037700 Rorug01G0037800 Rorug01G0037800 Rorug01G0042100 Rorug01G0065000 Rorug05G0379300 Rorug05G0379400
rosa_samantha Rh1AG054700 Rh1AG054900 Rh1AG055000 Rh1AG055200 Rh1AG055300 Rh1BG047500 Rh1CG055800 Rh1CG056000 Rh1CG061400 Rh1DG059900 Rh1DG060200 Rh5AG439100 Rh5AG439200 Rh5BG455900 Rh5CG478000 Rh5CG478300
rosa_wichuraiana Rw1G004750 Rw1G004760 Rw1G004770 Rw1G004790 Rw1G005080 Rw1G006510 Rw5G041060 Rw5G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 341, 377
Acc36I ACCTGC 2 cut(s) 341, 377
AccB7I CCANNNNNTGG 1 cut(s) 333
AccII CGCG 1 cut(s) 174
AciI CCGC 2 cut(s) 172, 461
AclWI GGATC 3 cut(s) 671, 830, 1171
AcsI RAATTY 3 cut(s) 112, 228, 361
AcuI CTGAAG 2 cut(s) 127, 934
AdeI CACNNNGTG 1 cut(s) 24
AfaI GTAC 6 cut(s) 28, 52, 474, 508, 808, 955
AfiI CCNNNNNNNGG 2 cut(s) 333, 758
AgsI TTSAA 4 cut(s) 274, 642, 933, 1068
AloI GAACNNNNNNTCC 2 cut(s) 889, 921
AluBI AGCT 6 cut(s) 141, 163, 382, 392, 486, 1034
AluI AGCT 6 cut(s) 141, 163, 382, 392, 486, 1034
Alw21I GWGCWC 1 cut(s) 575
Alw26I GTCTC 2 cut(s) 66, 214
AlwI GGATC 3 cut(s) 671, 830, 1171
Ama87I CYCGRG 1 cut(s) 1181
AoxI GGCC 1 cut(s) 1041
ApeKI GCWGC 3 cut(s) 155, 542, 800
ApoI RAATTY 3 cut(s) 112, 228, 361
AseI ATTAAT 1 cut(s) 645
AspLEI GCGC 1 cut(s) 929
AspS9I GGNCC 4 cut(s) 15, 317, 749, 1041
AsuHPI GGTGA 3 cut(s) 56, 358, 847
AvaI CYCGRG 1 cut(s) 1181
AvaII GGWCC 3 cut(s) 15, 317, 749
Bbv12I GWGCWC 1 cut(s) 575
BbvCI CCTCAGC 1 cut(s) 529
BbvI GCAGC 3 cut(s) 142, 554, 812
BccI CCATC 4 cut(s) 611, 752, 965, 1022
BciVI GTATCC 1 cut(s) 711
BclI TGATCA 1 cut(s) 1149
BcoDI GTCTC 2 cut(s) 66, 214
BfaI CTAG 4 cut(s) 393, 654, 957, 1100
BfmI CTRYAG 1 cut(s) 576
BfoI RGCGCY 1 cut(s) 930
BfuAI ACCTGC 2 cut(s) 341, 377
BfuI GTATCC 1 cut(s) 711
BglII AGATCT 1 cut(s) 251
BisI GCNGC 3 cut(s) 156, 543, 801
BlsI GCNGC 3 cut(s) 157, 544, 802
BmcAI AGTACT 1 cut(s) 955
Bme18I GGWCC 3 cut(s) 15, 317, 749
BmeT110I CYCGRG 1 cut(s) 1181
BmgT120I GGNCC 4 cut(s) 15, 317, 749, 1041
BmiI GGNNCC 2 cut(s) 439, 1042
BmsI GCATC 3 cut(s) 595, 777, 929
BplI GAGNNNNNCTC 2 cut(s) 86, 118
BpmI CTGGAG 1 cut(s) 1074
Bpu10I CCTNAGC 1 cut(s) 529
BsaJI CCNNGG 4 cut(s) 30, 70, 105, 782
BsaXI ACNNNNNCTCC 2 cut(s) 130, 160
Bsc4I CCNNNNNNNGG 2 cut(s) 333, 758
Bse3DI GCAATG 3 cut(s) 565, 711, 748
BseDI CCNNGG 4 cut(s) 30, 70, 105, 782
BseGI GGATG 5 cut(s) 235, 427, 792, 976, 1093
BseLI CCNNNNNNNGG 2 cut(s) 333, 758
BseMI GCAATG 3 cut(s) 565, 711, 748
BseMII CTCAG 3 cut(s) 212, 543, 747
BseRI GAGGAG 1 cut(s) 312
BseXI GCAGC 3 cut(s) 142, 554, 812
BsgI GTGCAG 1 cut(s) 369
Bsh1236I CGCG 1 cut(s) 174
BshFI GGCC 1 cut(s) 1043
BsiHKAI GWGCWC 1 cut(s) 575
BsiHKCI CYCGRG 1 cut(s) 1181
BslFI GGGAC 1 cut(s) 272
BslI CCNNNNNNNGG 2 cut(s) 333, 758
BsmAI GTCTC 2 cut(s) 66, 214
BsmFI GGGAC 1 cut(s) 272
BsnI GGCC 1 cut(s) 1043
BsoBI CYCGRG 1 cut(s) 1181
Bsp1286I GDGCHC 1 cut(s) 575
Bsp143I GATC 6 cut(s) 251, 676, 814, 822, 1149, 1176
Bsp19I CCATGG 1 cut(s) 782
BspACI CCGC 2 cut(s) 172, 461
BspANI GGCC 1 cut(s) 1043
BspCNI CTCAG 3 cut(s) 213, 542, 746
BspFNI CGCG 1 cut(s) 174
BspLI GGNNCC 2 cut(s) 439, 1042
BspMI ACCTGC 2 cut(s) 341, 377
BspPI GGATC 3 cut(s) 671, 830, 1171
BsrDI GCAATG 3 cut(s) 565, 711, 748
BssECI CCNNGG 4 cut(s) 30, 70, 105, 782
BssMI GATC 6 cut(s) 251, 676, 814, 822, 1149, 1176
BssT1I CCWWGG 3 cut(s) 30, 70, 782
Bst4CI ACNGT 4 cut(s) 15, 472, 796, 1142
BstAPI GCANNNNNTGC 1 cut(s) 539
BstC8I GCNNGC 1 cut(s) 189
BstDEI CTNAG 5 cut(s) 118, 221, 529, 733, 979
BstDSI CCRYGG 2 cut(s) 105, 782
BstF5I GGATG 5 cut(s) 235, 427, 792, 976, 1093
BstFNI CGCG 1 cut(s) 174
BstH2I RGCGCY 1 cut(s) 930
BstHHI GCGC 1 cut(s) 929
BstKTI GATC 6 cut(s) 254, 679, 817, 825, 1152, 1179
BstMAI GTCTC 2 cut(s) 66, 214
BstMBI GATC 6 cut(s) 251, 676, 814, 822, 1149, 1176
BstMWI GCNNNNNNNGC 5 cut(s) 539, 590, 701, 776, 1040
BstSFI CTRYAG 1 cut(s) 576
BstUI CGCG 1 cut(s) 174
BstV1I GCAGC 3 cut(s) 142, 554, 812
BstX2I RGATCY 3 cut(s) 251, 676, 1176
BstYI RGATCY 3 cut(s) 251, 676, 1176
BsuI GTATCC 1 cut(s) 711
BsuRI GGCC 1 cut(s) 1043
BtgI CCRYGG 2 cut(s) 105, 782
BtsCI GGATG 5 cut(s) 235, 427, 792, 976, 1093
BtsIMutI CAGTG 1 cut(s) 151
BveI ACCTGC 2 cut(s) 341, 377
Cac8I GCNNGC 1 cut(s) 189
CfoI GCGC 1 cut(s) 929
Cfr13I GGNCC 4 cut(s) 15, 317, 749, 1041
Csp6I GTAC 6 cut(s) 27, 51, 473, 507, 807, 954
CviAII CATG 5 cut(s) 196, 434, 476, 701, 783
CviQI GTAC 6 cut(s) 27, 51, 473, 507, 807, 954
DdeI CTNAG 5 cut(s) 118, 221, 529, 733, 979
DpnI GATC 6 cut(s) 253, 678, 816, 824, 1151, 1178
DpnII GATC 6 cut(s) 251, 676, 814, 822, 1149, 1176
DraI TTTAAA 1 cut(s) 301
DraIII CACNNNGTG 1 cut(s) 24
Eco130I CCWWGG 3 cut(s) 30, 70, 782
Eco47I GGWCC 3 cut(s) 15, 317, 749
Eco57I CTGAAG 2 cut(s) 127, 934
Eco88I CYCGRG 1 cut(s) 1181
EcoO109I RGGNCCY 1 cut(s) 1041
EcoRI GAATTC 1 cut(s) 228
EcoT14I CCWWGG 3 cut(s) 30, 70, 782
ErhI CCWWGG 3 cut(s) 30, 70, 782
FaeI CATG 5 cut(s) 199, 437, 479, 704, 786
FaqI GGGAC 1 cut(s) 272
FatI CATG 5 cut(s) 195, 433, 475, 700, 782
FauI CCCGC 1 cut(s) 454
FbaI TGATCA 1 cut(s) 1149
Fnu4HI GCNGC 3 cut(s) 156, 543, 801
FokI GGATG 5 cut(s) 222, 434, 799, 983, 1100
Fsp4HI GCNGC 3 cut(s) 156, 543, 801
FspBI CTAG 4 cut(s) 393, 654, 957, 1100
GlaI GCGC 1 cut(s) 928
GluI GCNGC 3 cut(s) 156, 543, 801
GsuI CTGGAG 1 cut(s) 1074
HaeII RGCGCY 1 cut(s) 930
HaeIII GGCC 1 cut(s) 1043
HhaI GCGC 1 cut(s) 929
Hin1II CATG 5 cut(s) 199, 437, 479, 704, 786
Hin6I GCGC 1 cut(s) 927
HinP1I GCGC 1 cut(s) 927
HincII GTYRAC 1 cut(s) 625
HindII GTYRAC 1 cut(s) 625
HinfI GANTC 2 cut(s) 838, 1022
HphI GGTGA 3 cut(s) 56, 358, 847
Hpy166II GTNNAC 7 cut(s) 18, 27, 37, 53, 77, 625, 877
Hpy188I TCNGA 3 cut(s) 222, 389, 1027
Hpy188III TCNNGA 4 cut(s) 43, 94, 670, 1053
Hpy8I GTNNAC 7 cut(s) 18, 27, 37, 53, 77, 625, 877
Hpy99I CGWCG 1 cut(s) 822
HpyAV CCTTC 3 cut(s) 193, 560, 706
HpyCH4III ACNGT 4 cut(s) 15, 472, 796, 1142
HpyF10VI GCNNNNNNNGC 5 cut(s) 539, 590, 701, 776, 1040
HpyF3I CTNAG 5 cut(s) 118, 221, 529, 733, 979
Hsp92II CATG 5 cut(s) 199, 437, 479, 704, 786
HspAI GCGC 1 cut(s) 927
Ksp22I TGATCA 1 cut(s) 1149
Kzo9I GATC 6 cut(s) 251, 676, 814, 822, 1149, 1176
LmnI GCTCC 4 cut(s) 138, 389, 1031, 1055
LpnPI CCDG 5 cut(s) 56, 336, 382, 1038, 1128
Lsp1109I GCAGC 3 cut(s) 142, 554, 812
LweI GCATC 3 cut(s) 595, 777, 929
MaeI CTAG 4 cut(s) 393, 654, 957, 1100
MaeIII GTNAC 1 cut(s) 128
MalI GATC 6 cut(s) 253, 678, 816, 824, 1151, 1178
MboI GATC 6 cut(s) 251, 676, 814, 822, 1149, 1176
MfeI CAATTG 1 cut(s) 687
MflI RGATCY 3 cut(s) 251, 676, 1176
MhlI GDGCHC 1 cut(s) 575
MluCI AATT 9 cut(s) 112, 228, 361, 403, 537, 630, 642, 687, 1068
MlyI GAGTC 1 cut(s) 1031
MnlI CCTC 9 cut(s) 177, 249, 330, 333, 411, 512, 538, 574, 1142
MseI TTAA 5 cut(s) 300, 452, 645, 890, 996
MunI CAATTG 1 cut(s) 687
MvnI CGCG 1 cut(s) 174
MwoI GCNNNNNNNGC 5 cut(s) 539, 590, 701, 776, 1040
NcoI CCATGG 1 cut(s) 782
NdeII GATC 6 cut(s) 251, 676, 814, 822, 1149, 1176
NlaIII CATG 5 cut(s) 199, 437, 479, 704, 786
NlaIV GGNNCC 2 cut(s) 439, 1042
PaeR7I CTCGAG 1 cut(s) 1181
PaqCI CACCTGC 2 cut(s) 341, 377
PfeI GAWTC 1 cut(s) 838
PflMI CCANNNNNTGG 1 cut(s) 333
PkrI GCNGC 3 cut(s) 157, 544, 802
PleI GAGTC 1 cut(s) 1030
PpsI GAGTC 1 cut(s) 1030
PshBI ATTAAT 1 cut(s) 645
PspN4I GGNNCC 2 cut(s) 439, 1042
PspPI GGNCC 4 cut(s) 15, 317, 749, 1041
PspXI VCTCGAGB 1 cut(s) 1181
PsuI RGATCY 3 cut(s) 251, 676, 1176
RsaI GTAC 6 cut(s) 28, 52, 474, 508, 808, 955
RsaNI GTAC 6 cut(s) 27, 51, 473, 507, 807, 954
SaqAI TTAA 5 cut(s) 300, 452, 645, 890, 996
SatI GCNGC 3 cut(s) 156, 543, 801
Sau3AI GATC 6 cut(s) 251, 676, 814, 822, 1149, 1176
Sau96I GGNCC 4 cut(s) 15, 317, 749, 1041
ScaI AGTACT 1 cut(s) 955
SchI GAGTC 1 cut(s) 1031
SduI GDGCHC 1 cut(s) 575
SfaNI GCATC 3 cut(s) 595, 777, 929
SfcI CTRYAG 1 cut(s) 576
Sfr274I CTCGAG 1 cut(s) 1181
SinI GGWCC 3 cut(s) 15, 317, 749
SlaI CTCGAG 1 cut(s) 1181
SmlI CTYRAG 1 cut(s) 1181
SmoI CTYRAG 1 cut(s) 1181
Sse9I AATT 9 cut(s) 112, 228, 361, 403, 537, 630, 642, 687, 1068
SsiI CCGC 2 cut(s) 172, 461
SspMI CTAG 4 cut(s) 393, 654, 957, 1100
StyI CCWWGG 3 cut(s) 30, 70, 782
TaaI ACNGT 4 cut(s) 15, 472, 796, 1142
TaqI TCGA 6 cut(s) 93, 241, 669, 817, 937, 1182
TasI AATT 9 cut(s) 112, 228, 361, 403, 537, 630, 642, 687, 1068
TatI WGTACW 3 cut(s) 50, 806, 953
TfiI GAWTC 1 cut(s) 838
Tru1I TTAA 5 cut(s) 300, 452, 645, 890, 996
Tru9I TTAA 5 cut(s) 300, 452, 645, 890, 996
TscAI CASTG 1 cut(s) 151
TseI GCWGC 3 cut(s) 155, 542, 800
TspDTI ATGAA 6 cut(s) 17, 212, 321, 438, 689, 1088
TspGWI ACGGA 2 cut(s) 94, 835
TspRI CASTG 1 cut(s) 151
Van91I CCANNNNNTGG 1 cut(s) 333
VpaK11BI GGWCC 3 cut(s) 15, 317, 749
VspI ATTAAT 1 cut(s) 645
XapI RAATTY 3 cut(s) 112, 228, 361
XhoI CTCGAG 1 cut(s) 1181
XspI CTAG 4 cut(s) 393, 654, 957, 1100
ZrmI AGTACT 1 cut(s) 955
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.