Rorug05G0379400

Subtilisin-like serine endopeptidase family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000257
Physical Location & Seq
Reverse (-)
51493434 .. 51499693
6260 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0379400.1

Sequence Viewer

Length: 777 bp
ATGAGTTGGAACCCTCATATGGGAGTTCATTACCCCTACAACAGCTGTCCCTACAGCACGGTGGGTAGCTTTATGGACTATGTTGAAGGCCTCACCTACGAACATGTGAACTTTATTTTTTCAGGGGATTCACATGCTCAGGAGAGCACTTACCCATCAATGAATACGAACTATTACAAGTTTGGGTTAACTGAACCTGGGAATACTTCATATTATGATCTTGGTTTTCGTCATGCCTATGAGTTCAATGATCCTGTCTCAAGAAGTGGTGAAGAAACAAGGCCTTTGCAGTACTCGTCAACTATTCCTAATGAACAGAATGTGGCAAGGGATCCAGCATGCGAAGGAAGTGCAAACACTTCCACATGTGACAACCCCAGAGAATTATCCTCTTATATTTCAGCCCCTCGAAGATATCAGAACTCCCATGATTATCAGGTTATTTTGGAAGACAACATTGATCCTGATAGCATGACTTATGAGGAGTTACTAGAATTAGGTGAGGCAGTTGGAACTGAAAGCCGAGGTCTTTCCCAAGATATGCTTTCTTTGCTTCCAATCTCGAAGTACAAGTGCAGCTTTTTCTCAAGAAAGAAATCACGGAGTGAGAGGTGTGTTATTTGCCAGATGGAATATAAACGAGGGGATCGGCAGATCACTCTACCGTGCAAACACCTCTATCATGCTGGATGTGGAACCAGATGGCTTAGCATGAACAAGGCTTGCCCAATATGCTACACCGAGGTATTTGGTAATGGATCGACGAGCAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 PA Peptidase_S8

Protein Analysis

258

Amino Acids

29.4

Weight (kDa)

5.63

Isoelectric Point (pI)

51.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 200 - 245 1.4e-06 RING-H2 zinc finger domain
zf-C3HC4_3 PF13920 202 - 249 7.6e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 204 - 245 1e-12 Ring finger domain
zf-C3HC4_2 PF13923 204 - 245 1.5e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 205 - 231 1.3e-06 RING-like zinc finger
zf-C3HC4 PF00097 205 - 245 1.3e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000257)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46840 AT3G46850 AT5G58820 AT5G58830 AT5G58840 AT5G58840 AT5G58840 AT5G59090 AT5G59090 AT5G59090 AT5G59100 AT5G59120 AT5G59130 AT5G59130 AT5G59130 AT5G59130 AT5G59190
fragaria_vesca FvH4_3g37170 FvH4_7g02830 FvH4_7g02840
malus_domestica MD02G1288900.v1.1 MD02G1289100.v1.1 MD02G1289300.v1.1 MD02G1289400.v1.1 MD02G1289500.v1.1 MD03G1083800.v1.1 MD03G1084000.v1.1 MD07G1037500.v1.1 MD07G1037600.v1.1 MD07G1037700.v1.1 MD07G1039300.v1.1 MD11G1091900.v1.1 MD11G1092000.v1.1
prunus_persica Prupe.2G032800_v2.0.a1 Prupe.2G033000_v2.0.a1 Prupe.2G033100_v2.0.a1 Prupe.2G035100_v2.0.a1 Prupe.6G067600_v2.0.a1 Prupe.6G067600_v2.0.a1 Prupe.6G067700_v2.0.a1 Prupe.6G067800_v2.0.a1
pyrus_communis pycom02g24440 pycom02g24470 pycom02g24480 pycom02g24500 pycom02g24510 pycom03g06650 pycom07g02730 pycom11g07710 pycom11g07720
rosa_chinensis RchiOBHm_Chr1g0323281 RchiOBHm_Chr1g0323291 RchiOBHm_Chr1g0323311 RchiOBHm_Chr1g0323341 RchiOBHm_Chr1g0323351 RchiOBHm_Chr1g0323371 RchiOBHm_Chr1g0323431 RchiOBHm_Chr1g0323461 RchiOBHm_Chr1g0324031 RchiOBHm_Chr5g0066891 RchiOBHm_Chr5g0066901
rosa_laevigata RLG00000030004 RLG00000030235 RLG00000030328 RLG00000030329 RLG00000030334 RLG00000030336 RLG00000030337 RLG00000030338 RLG00000030339 RLG00000030340 RLG00000035885 RLG00000035886 RLG00000035888 RLG00000035890
rosa_multiflora Rmu_co8481685.1_g000001 Rmu_co8485349.1_g000001 Rmu_sc0000605.1_g000061 Rmu_sc0000804.1_g000004 Rmu_sc0000804.1_g000008 Rmu_sc0002263.1_g000074 Rmu_sc0002263.1_g000076 Rmu_sc0002263.1_g000077 Rmu_sc0003418.1_g000005 Rmu_sc0003418.1_g000007 Rmu_sc0003418.1_g000008 Rmu_sc0008378.1_g000013 Rmu_sc0010151.1_g000012
rosa_roxburghii Rroxscaffold_1G00014220 Rroxscaffold_1G00014230 Rroxscaffold_4G00325970 Rroxscaffold_4G00326160 Rroxscaffold_4G00326570 Rroxscaffold_4G00326580 Rroxscaffold_4G00326650 Rroxscaffold_4G00326670 Rroxscaffold_4G00326680 Rroxscaffold_4G00326700
rosa_rugosa Rorug01G0037300 Rorug01G0037400 Rorug01G0037600 Rorug01G0037700 Rorug01G0037800 Rorug01G0037800 Rorug01G0042100 Rorug01G0065000 Rorug05G0379300 Rorug05G0379400
rosa_samantha Rh1AG054700 Rh1AG054900 Rh1AG055000 Rh1AG055200 Rh1AG055300 Rh1BG047500 Rh1CG055800 Rh1CG056000 Rh1CG061400 Rh1DG059900 Rh1DG060200 Rh5AG439100 Rh5AG439200 Rh5BG455900 Rh5CG478000 Rh5CG478300
rosa_wichuraiana Rw1G004750 Rw1G004760 Rw1G004770 Rw1G004790 Rw1G005080 Rw1G006510 Rw5G041060 Rw5G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 6 cut(s) 245, 326, 339, 455, 654, 766
AdeI CACNNNGTG 1 cut(s) 605
AfaI GTAC 2 cut(s) 293, 569
AfiI CCNNNNNNNGG 2 cut(s) 19, 20
AflIII ACRYGT 2 cut(s) 103, 365
AgsI TTSAA 2 cut(s) 86, 247
AjnI CCWGG 1 cut(s) 196
AluBI AGCT 3 cut(s) 45, 69, 579
AluI AGCT 3 cut(s) 45, 69, 579
Alw21I GWGCWC 1 cut(s) 149
Alw26I GTCTC 1 cut(s) 262
AlwI GGATC 6 cut(s) 245, 326, 339, 455, 654, 766
AoxI GGCC 2 cut(s) 88, 281
ApeKI GCWGC 1 cut(s) 576
AsuHPI GGTGA 3 cut(s) 85, 281, 512
BamHI GGATCC 1 cut(s) 331
BbsI GAAGAC 1 cut(s) 456
Bbv12I GWGCWC 1 cut(s) 149
BbvI GCAGC 1 cut(s) 588
BccI CCATC 3 cut(s) 163, 622, 696
BcgI CGANNNNNNTGC 2 cut(s) 332, 366
BciT130I CCWGG 1 cut(s) 198
BcoDI GTCTC 1 cut(s) 262
BfaI CTAG 1 cut(s) 491
BfmI CTRYAG 1 cut(s) 52
BisI GCNGC 1 cut(s) 577
BlpI GCTNAGC 1 cut(s) 707
BlsI GCNGC 1 cut(s) 578
BmcAI AGTACT 1 cut(s) 293
Bme1390I CCNGG 1 cut(s) 198
BmiI GGNNCC 3 cut(s) 11, 333, 697
BmrFI CCNGG 1 cut(s) 198
BpiI GAAGAC 1 cut(s) 456
Bpu10I CCTNAGC 1 cut(s) 138
Bpu1102I GCTNAGC 1 cut(s) 707
BpuEI CTTGAG 2 cut(s) 244, 571
BsaJI CCNNGG 3 cut(s) 197, 523, 741
Bsc4I CCNNNNNNNGG 2 cut(s) 19, 20
BseBI CCWGG 1 cut(s) 198
BseDI CCNNGG 3 cut(s) 197, 523, 741
BseGI GGATG 1 cut(s) 695
BseLI CCNNNNNNNGG 2 cut(s) 19, 20
BseMII CTCAG 1 cut(s) 152
BseRI GAGGAG 1 cut(s) 497
BseXI GCAGC 1 cut(s) 588
BsgI GTGCAG 1 cut(s) 595
BshFI GGCC 2 cut(s) 90, 283
BsiHKAI GWGCWC 1 cut(s) 149
BslFI GGGAC 1 cut(s) 33
BslI CCNNNNNNNGG 2 cut(s) 19, 20
BsmAI GTCTC 1 cut(s) 262
BsmFI GGGAC 1 cut(s) 33
BsnI GGCC 2 cut(s) 90, 283
Bsp1286I GDGCHC 1 cut(s) 149
Bsp143I GATC 7 cut(s) 217, 250, 331, 460, 646, 654, 758
Bsp1720I GCTNAGC 1 cut(s) 707
BspANI GGCC 2 cut(s) 90, 283
BspCNI CTCAG 1 cut(s) 151
BspLI GGNNCC 3 cut(s) 11, 333, 697
BspPI GGATC 6 cut(s) 245, 326, 339, 455, 654, 766
BssECI CCNNGG 3 cut(s) 197, 523, 741
BssMI GATC 7 cut(s) 217, 250, 331, 460, 646, 654, 758
Bst2UI CCWGG 1 cut(s) 198
Bst4CI ACNGT 2 cut(s) 61, 666
BstC8I GCNNGC 2 cut(s) 340, 724
BstDEI CTNAG 2 cut(s) 138, 707
BstF5I GGATG 1 cut(s) 695
BstKTI GATC 7 cut(s) 220, 253, 334, 463, 649, 657, 761
BstMAI GTCTC 1 cut(s) 262
BstMBI GATC 7 cut(s) 217, 250, 331, 460, 646, 654, 758
BstMWI GCNNNNNNNGC 2 cut(s) 550, 732
BstNI CCWGG 1 cut(s) 198
BstNSI RCATGY 4 cut(s) 107, 137, 342, 369
BstSCI CCNGG 1 cut(s) 196
BstSFI CTRYAG 1 cut(s) 52
BstV1I GCAGC 1 cut(s) 588
BstV2I GAAGAC 1 cut(s) 456
BstX2I RGATCY 1 cut(s) 331
BstYI RGATCY 1 cut(s) 331
BsuRI GGCC 2 cut(s) 90, 283
BtsCI GGATG 1 cut(s) 695
Cac8I GCNNGC 2 cut(s) 340, 724
Csp6I GTAC 2 cut(s) 292, 568
CviAII CATG 9 cut(s) 104, 134, 233, 339, 366, 428, 472, 683, 712
CviJI RGCY 9 cut(s) 45, 69, 90, 283, 404, 522, 579, 706, 722
CviKI_1 RGCY 9 cut(s) 45, 69, 90, 283, 404, 522, 579, 706, 722
CviQI GTAC 2 cut(s) 292, 568
DdeI CTNAG 2 cut(s) 138, 707
DpnI GATC 7 cut(s) 219, 252, 333, 462, 648, 656, 760
DpnII GATC 7 cut(s) 217, 250, 331, 460, 646, 654, 758
DraIII CACNNNGTG 1 cut(s) 605
Eco147I AGGCCT 2 cut(s) 90, 283
Eco32I GATATC 1 cut(s) 416
EcoRII CCWGG 1 cut(s) 196
EcoRV GATATC 1 cut(s) 416
FaeI CATG 9 cut(s) 107, 137, 236, 342, 369, 431, 475, 686, 715
FalI AAGNNNNNCTT 4 cut(s) 528, 560, 563, 595
FaqI GGGAC 1 cut(s) 33
FatI CATG 9 cut(s) 103, 133, 232, 338, 365, 427, 471, 682, 711
FauNDI CATATG 1 cut(s) 18
Fnu4HI GCNGC 1 cut(s) 577
FokI GGATG 1 cut(s) 702
Fsp4HI GCNGC 1 cut(s) 577
FspBI CTAG 1 cut(s) 491
GluI GCNGC 1 cut(s) 577
HaeIII GGCC 2 cut(s) 90, 283
Hin1II CATG 9 cut(s) 107, 137, 236, 342, 369, 431, 475, 686, 715
HincII GTYRAC 2 cut(s) 189, 300
HindII GTYRAC 2 cut(s) 189, 300
HinfI GANTC 1 cut(s) 128
HpaI GTTAAC 1 cut(s) 189
HphI GGTGA 3 cut(s) 85, 281, 512
Hpy166II GTNNAC 3 cut(s) 109, 189, 300
Hpy188I TCNGA 1 cut(s) 420
Hpy188III TCNNGA 5 cut(s) 140, 261, 464, 562, 588
Hpy8I GTNNAC 3 cut(s) 109, 189, 300
Hpy99I CGWCG 1 cut(s) 766
HpyAV CCTTC 2 cut(s) 80, 338
HpyCH4III ACNGT 2 cut(s) 61, 666
HpyCH4V TGCA 4 cut(s) 289, 353, 576, 669
HpyF10VI GCNNNNNNNGC 2 cut(s) 550, 732
HpyF3I CTNAG 2 cut(s) 138, 707
Hsp92II CATG 9 cut(s) 107, 137, 236, 342, 369, 431, 475, 686, 715
KspAI GTTAAC 1 cut(s) 189
Kzo9I GATC 7 cut(s) 217, 250, 331, 460, 646, 654, 758
Lsp1109I GCAGC 1 cut(s) 588
MaeI CTAG 1 cut(s) 491
MaeIII GTNAC 2 cut(s) 368, 486
MalI GATC 7 cut(s) 219, 252, 333, 462, 648, 656, 760
MboI GATC 7 cut(s) 217, 250, 331, 460, 646, 654, 758
MboII GAAGA 3 cut(s) 284, 423, 461
MflI RGATCY 1 cut(s) 331
MhlI GDGCHC 1 cut(s) 149
MluCI AATT 2 cut(s) 383, 494
MmeI TCCRAC 1 cut(s) 490
MseI TTAA 1 cut(s) 188
MslI CAYNNNNRTG 1 cut(s) 237
MspA1I CMGCKG 1 cut(s) 45
MspR9I CCNGG 1 cut(s) 198
MvaI CCWGG 1 cut(s) 198
MwoI GCNNNNNNNGC 2 cut(s) 550, 732
NdeI CATATG 1 cut(s) 18
NdeII GATC 7 cut(s) 217, 250, 331, 460, 646, 654, 758
NlaIII CATG 9 cut(s) 107, 137, 236, 342, 369, 431, 475, 686, 715
NlaIV GGNNCC 3 cut(s) 11, 333, 697
NmeAIII GCCGAG 1 cut(s) 548
NmuCI GTSAC 1 cut(s) 368
NspI RCATGY 4 cut(s) 107, 137, 342, 369
PaeI GCATGC 1 cut(s) 342
PceI AGGCCT 2 cut(s) 90, 283
PciI ACATGT 2 cut(s) 103, 365
PfeI GAWTC 1 cut(s) 128
PkrI GCNGC 1 cut(s) 578
PscI ACATGT 2 cut(s) 103, 365
Psp6I CCWGG 1 cut(s) 196
PspGI CCWGG 1 cut(s) 196
PspN4I GGNNCC 3 cut(s) 11, 333, 697
PsuI RGATCY 1 cut(s) 331
PvuII CAGCTG 1 cut(s) 45
RsaI GTAC 2 cut(s) 293, 569
RsaNI GTAC 2 cut(s) 292, 568
RseI CAYNNNNRTG 1 cut(s) 237
SaqAI TTAA 1 cut(s) 188
SatI GCNGC 1 cut(s) 577
Sau3AI GATC 7 cut(s) 217, 250, 331, 460, 646, 654, 758
ScaI AGTACT 1 cut(s) 293
ScrFI CCNGG 1 cut(s) 198
SduI GDGCHC 1 cut(s) 149
SfcI CTRYAG 1 cut(s) 52
SmiMI CAYNNNNRTG 1 cut(s) 237
SmlI CTYRAG 2 cut(s) 259, 586
SmoI CTYRAG 2 cut(s) 259, 586
SphI GCATGC 1 cut(s) 342
Sse9I AATT 2 cut(s) 383, 494
SseBI AGGCCT 2 cut(s) 90, 283
SspMI CTAG 1 cut(s) 491
StuI AGGCCT 2 cut(s) 90, 283
StyD4I CCNGG 1 cut(s) 196
TaaI ACNGT 2 cut(s) 61, 666
TaqI TCGA 3 cut(s) 409, 563, 761
TasI AATT 2 cut(s) 383, 494
TatI WGTACW 2 cut(s) 291, 567
TfiI GAWTC 1 cut(s) 128
Tru1I TTAA 1 cut(s) 188
Tru9I TTAA 1 cut(s) 188
TseFI GTSAC 1 cut(s) 368
TseI GCWGC 1 cut(s) 576
Tsp45I GTSAC 1 cut(s) 368
TspDTI ATGAA 5 cut(s) 17, 176, 198, 327, 728
TspGWI ACGGA 1 cut(s) 616
XceI RCATGY 4 cut(s) 107, 137, 342, 369
XspI CTAG 1 cut(s) 491
ZrmI AGTACT 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.