Rmu_sc0000804.1_g000008

Subtilisin-like serine endopeptidase family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000804.1
OG0000257
Physical Location & Seq
Reverse (-)
26048 .. 26965
918 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000804.1_g000008.1.cds

Sequence Viewer

Length: 918 bp
atgatagaagtagtctctgtatttccaagcacaactttccaacttcaaacgacaagatcttgggactttctcggtttcaatgagaaaatccaacgaaatgacagcgttgagagtgatatcattattggtgtcattgactctggaatttggcctgattcggagagcttcaaagacgatggttttggtcctcctcccaagaagtggaaaggtgcttgtgtaggtggcaaaaattttacttgtaataataagctcattggtgctcggttttacaaatcatcctctcagtctgcaagggatgaaactggccatggaacacacactgcctcaacagtaaccgggaatgctgtaaaggatgtcagcttttatggtatagcccaaggcattgcaagagggggagttccctcagcgagagttgctgcgtatagagtctgcagtgaccaaggatgccctacagaggctatcttggctgcttttgacgatgctattgccgatggagttgatatcattacaatttcaataggaagcccggatgtaactgtactactgcagcatgatccaattgctgtcggatctttccatgcaatggcaaaggggatacttacatcaaactcagcaggcaataatggtcctagagctagtaccgtaacaagtgtagcaccatggttacttacagttgcagcaagtagtacagatcgtagaatgattgacaaggttgttcttggaaatggtacaactgtagttggggcttcagtgaactctttccaaatgactgggacaagttttccattaataaatggaaaagatgctacaactcaatgcctagagtttgatgctcggaagtgtatacaagactgcttagaccatggtttagttaagggaaaggttgtgttatgtgaagagtcatatggccggaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 PA Peptidase_S8

Protein Analysis

305

Amino Acids

32.25

Weight (kDa)

5.74

Isoelectric Point (pI)

28.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000257)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46840 AT3G46850 AT5G58820 AT5G58830 AT5G58840 AT5G58840 AT5G58840 AT5G59090 AT5G59090 AT5G59090 AT5G59100 AT5G59120 AT5G59130 AT5G59130 AT5G59130 AT5G59130 AT5G59190
fragaria_vesca FvH4_3g37170 FvH4_7g02830 FvH4_7g02840
malus_domestica MD02G1288900.v1.1 MD02G1289100.v1.1 MD02G1289300.v1.1 MD02G1289400.v1.1 MD02G1289500.v1.1 MD03G1083800.v1.1 MD03G1084000.v1.1 MD07G1037500.v1.1 MD07G1037600.v1.1 MD07G1037700.v1.1 MD07G1039300.v1.1 MD11G1091900.v1.1 MD11G1092000.v1.1
prunus_persica Prupe.2G032800_v2.0.a1 Prupe.2G033000_v2.0.a1 Prupe.2G033100_v2.0.a1 Prupe.2G035100_v2.0.a1 Prupe.6G067600_v2.0.a1 Prupe.6G067600_v2.0.a1 Prupe.6G067700_v2.0.a1 Prupe.6G067800_v2.0.a1
pyrus_communis pycom02g24440 pycom02g24470 pycom02g24480 pycom02g24500 pycom02g24510 pycom03g06650 pycom07g02730 pycom11g07710 pycom11g07720
rosa_chinensis RchiOBHm_Chr1g0323281 RchiOBHm_Chr1g0323291 RchiOBHm_Chr1g0323311 RchiOBHm_Chr1g0323341 RchiOBHm_Chr1g0323351 RchiOBHm_Chr1g0323371 RchiOBHm_Chr1g0323431 RchiOBHm_Chr1g0323461 RchiOBHm_Chr1g0324031 RchiOBHm_Chr5g0066891 RchiOBHm_Chr5g0066901
rosa_laevigata RLG00000030004 RLG00000030235 RLG00000030328 RLG00000030329 RLG00000030334 RLG00000030336 RLG00000030337 RLG00000030338 RLG00000030339 RLG00000030340 RLG00000035885 RLG00000035886 RLG00000035888 RLG00000035890
rosa_multiflora Rmu_co8481685.1_g000001 Rmu_co8485349.1_g000001 Rmu_sc0000605.1_g000061 Rmu_sc0000804.1_g000004 Rmu_sc0000804.1_g000008 Rmu_sc0002263.1_g000074 Rmu_sc0002263.1_g000076 Rmu_sc0002263.1_g000077 Rmu_sc0003418.1_g000005 Rmu_sc0003418.1_g000007 Rmu_sc0003418.1_g000008 Rmu_sc0008378.1_g000013 Rmu_sc0010151.1_g000012
rosa_roxburghii Rroxscaffold_1G00014220 Rroxscaffold_1G00014230 Rroxscaffold_4G00325970 Rroxscaffold_4G00326160 Rroxscaffold_4G00326570 Rroxscaffold_4G00326580 Rroxscaffold_4G00326650 Rroxscaffold_4G00326670 Rroxscaffold_4G00326680 Rroxscaffold_4G00326700
rosa_rugosa Rorug01G0037300 Rorug01G0037400 Rorug01G0037600 Rorug01G0037700 Rorug01G0037800 Rorug01G0037800 Rorug01G0042100 Rorug01G0065000 Rorug05G0379300 Rorug05G0379400
rosa_samantha Rh1AG054700 Rh1AG054900 Rh1AG055000 Rh1AG055200 Rh1AG055300 Rh1BG047500 Rh1CG055800 Rh1CG056000 Rh1CG061400 Rh1DG059900 Rh1DG060200 Rh5AG439100 Rh5AG439200 Rh5BG455900 Rh5CG478000 Rh5CG478300
rosa_wichuraiana Rw1G004750 Rw1G004760 Rw1G004770 Rw1G004790 Rw1G005080 Rw1G006510 Rw5G041060 Rw5G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 201, 583
AccI GTMKAC 1 cut(s) 844
AclWI GGATC 2 cut(s) 548, 577
AcoI YGGCCR 2 cut(s) 304, 907
AcsI RAATTY 2 cut(s) 144, 229
AcuI CTGAAG 1 cut(s) 732
AfaI GTAC 4 cut(s) 540, 640, 688, 730
AfiI CCNNNNNNNGG 3 cut(s) 201, 454, 583
AgsI TTSAA 4 cut(s) 47, 79, 169, 516
AluBI AGCT 4 cut(s) 165, 250, 360, 635
AluI AGCT 4 cut(s) 165, 250, 360, 635
Alw21I GWGCWC 1 cut(s) 262
Alw26I GTCTC 1 cut(s) 19
AlwI GGATC 2 cut(s) 548, 577
AoxI GGCC 3 cut(s) 149, 304, 907
ApeKI GCWGC 4 cut(s) 416, 467, 547, 677
ApoI RAATTY 2 cut(s) 144, 229
ArsI GACNNNNNNTTYG 2 cut(s) 164, 196
AseI ATTAAT 1 cut(s) 788
Asp700I GAANNNNTTC 1 cut(s) 758
AspS9I GGNCC 2 cut(s) 185, 626
AsuC2I CCSGG 2 cut(s) 337, 527
AvaII GGWCC 2 cut(s) 185, 626
BaeI ACNNNNGTAYC 2 cut(s) 720, 753
BalI TGGCCA 1 cut(s) 306
Bbv12I GWGCWC 1 cut(s) 262
BbvCI CCTCAGC 1 cut(s) 403
BbvI GCAGC 4 cut(s) 403, 454, 559, 689
BccI CCATC 2 cut(s) 170, 485
BcgI CGANNNNNNTGC 2 cut(s) 467, 501
BciVI GTATCC 1 cut(s) 588
BcnI CCSGG 2 cut(s) 337, 527
BcoDI GTCTC 1 cut(s) 19
BfaI CTAG 3 cut(s) 630, 636, 821
BfmI CTRYAG 4 cut(s) 430, 450, 545, 735
BfuI GTATCC 1 cut(s) 588
BglII AGATCT 1 cut(s) 56
BisI GCNGC 4 cut(s) 417, 468, 548, 678
BlsI GCNGC 4 cut(s) 418, 469, 549, 679
Bme1390I CCNGG 2 cut(s) 337, 527
Bme18I GGWCC 2 cut(s) 185, 626
BmgT120I GGNCC 2 cut(s) 185, 626
BmrFI CCNGG 2 cut(s) 337, 527
BmrI ACTGGG 1 cut(s) 780
BmsI GCATC 4 cut(s) 434, 469, 793, 820
BmuI ACTGGG 1 cut(s) 780
Bpu10I CCTNAGC 1 cut(s) 403
BpuMI CCSGG 2 cut(s) 337, 527
BsaJI CCNNGG 5 cut(s) 307, 376, 439, 659, 862
Bsc4I CCNNNNNNNGG 3 cut(s) 201, 454, 583
Bse1I ACTGG 2 cut(s) 307, 775
Bse3DI GCAATG 2 cut(s) 381, 588
BseDI CCNNGG 5 cut(s) 307, 376, 439, 659, 862
BseGI GGATG 5 cut(s) 275, 301, 358, 449, 535
BseLI CCNNNNNNNGG 3 cut(s) 201, 454, 583
BseMI GCAATG 2 cut(s) 381, 588
BseMII CTCAG 3 cut(s) 296, 417, 624
BseNI ACTGG 2 cut(s) 307, 775
BseRI GAGGAG 1 cut(s) 180
BseXI GCAGC 4 cut(s) 403, 454, 559, 689
BshFI GGCC 3 cut(s) 151, 306, 909
BsiHKAI GWGCWC 1 cut(s) 262
BsiSI CCGG 3 cut(s) 336, 527, 910
BslFI GGGAC 2 cut(s) 77, 787
BslI CCNNNNNNNGG 3 cut(s) 201, 454, 583
BsmAI GTCTC 1 cut(s) 19
BsmFI GGGAC 2 cut(s) 77, 787
BsmI GAATGC 1 cut(s) 346
BsnI GGCC 3 cut(s) 151, 306, 909
Bsp1286I GDGCHC 1 cut(s) 262
Bsp143I GATC 4 cut(s) 56, 553, 569, 691
Bsp19I CCATGG 3 cut(s) 307, 659, 862
BspANI GGCC 3 cut(s) 151, 306, 909
BspCNI CTCAG 3 cut(s) 295, 416, 623
BspMAI CTGCAG 2 cut(s) 434, 549
BspPI GGATC 2 cut(s) 548, 577
BsrDI GCAATG 2 cut(s) 381, 588
BsrI ACTGG 2 cut(s) 307, 775
BssECI CCNNGG 5 cut(s) 307, 376, 439, 659, 862
BssMI GATC 4 cut(s) 56, 553, 569, 691
BssNAI GTATAC 1 cut(s) 845
BssT1I CCWWGG 5 cut(s) 307, 376, 439, 659, 862
Bst1107I GTATAC 1 cut(s) 845
Bst4CI ACNGT 5 cut(s) 331, 538, 643, 673, 736
Bst6I CTCTTC 1 cut(s) 891
BstC8I GCNNGC 1 cut(s) 616
BstDEI CTNAG 4 cut(s) 282, 403, 610, 856
BstDSI CCRYGG 3 cut(s) 307, 659, 862
BstF5I GGATG 5 cut(s) 275, 301, 358, 449, 535
BstKTI GATC 4 cut(s) 59, 556, 572, 694
BstMAI GTCTC 1 cut(s) 19
BstMBI GATC 4 cut(s) 56, 553, 569, 691
BstMWI GCNNNNNNNGC 2 cut(s) 413, 464
BstSCI CCNGG 2 cut(s) 335, 525
BstSFI CTRYAG 4 cut(s) 430, 450, 545, 735
BstV1I GCAGC 4 cut(s) 403, 454, 559, 689
BstX2I RGATCY 2 cut(s) 56, 569
BstXI CCANNNNNNTGG 1 cut(s) 770
BstYI RGATCY 2 cut(s) 56, 569
BstZ17I GTATAC 1 cut(s) 845
BsuI GTATCC 1 cut(s) 588
BsuRI GGCC 3 cut(s) 151, 306, 909
BtgI CCRYGG 3 cut(s) 307, 659, 862
BtsCI GGATG 5 cut(s) 275, 301, 358, 449, 535
BtsI GCAGTG 2 cut(s) 318, 439
BtsIMutI CAGTG 3 cut(s) 318, 439, 756
Cac8I GCNNGC 1 cut(s) 616
Cfr13I GGNCC 2 cut(s) 185, 626
Csp6I GTAC 4 cut(s) 539, 639, 687, 729
CviAII CATG 5 cut(s) 308, 551, 578, 660, 863
CviQI GTAC 4 cut(s) 539, 639, 687, 729
DdeI CTNAG 4 cut(s) 282, 403, 610, 856
DpnI GATC 4 cut(s) 58, 555, 571, 693
DpnII GATC 4 cut(s) 56, 553, 569, 691
EaeI YGGCCR 2 cut(s) 304, 907
Eam1104I CTCTTC 1 cut(s) 891
EarI CTCTTC 1 cut(s) 891
Eco130I CCWWGG 5 cut(s) 307, 376, 439, 659, 862
Eco32I GATATC 2 cut(s) 118, 502
Eco47I GGWCC 2 cut(s) 185, 626
Eco57I CTGAAG 1 cut(s) 732
EcoRV GATATC 2 cut(s) 118, 502
EcoT14I CCWWGG 5 cut(s) 307, 376, 439, 659, 862
ErhI CCWWGG 5 cut(s) 307, 376, 439, 659, 862
FaeI CATG 5 cut(s) 311, 554, 581, 663, 866
FalI AAGNNNNNCTT 2 cut(s) 19, 51
FaqI GGGAC 2 cut(s) 77, 787
FatI CATG 5 cut(s) 307, 550, 577, 659, 862
FauNDI CATATG 1 cut(s) 904
FblI GTMKAC 1 cut(s) 844
Fnu4HI GCNGC 4 cut(s) 417, 468, 548, 678
FokI GGATG 5 cut(s) 262, 308, 365, 456, 542
Fsp4HI GCNGC 4 cut(s) 417, 468, 548, 678
FspBI CTAG 3 cut(s) 630, 636, 821
GluI GCNGC 4 cut(s) 417, 468, 548, 678
HaeIII GGCC 3 cut(s) 151, 306, 909
HapII CCGG 3 cut(s) 336, 527, 910
Hin1II CATG 5 cut(s) 311, 554, 581, 663, 866
HinfI GANTC 4 cut(s) 137, 155, 426, 899
HpaII CCGG 3 cut(s) 336, 527, 910
Hpy166II GTNNAC 2 cut(s) 754, 845
Hpy188I TCNGA 3 cut(s) 160, 569, 837
Hpy188III TCNNGA 1 cut(s) 141
Hpy8I GTNNAC 2 cut(s) 754, 845
HpyCH4III ACNGT 5 cut(s) 331, 538, 643, 673, 736
HpyCH4V TGCA 6 cut(s) 290, 386, 432, 547, 581, 677
HpyF10VI GCNNNNNNNGC 2 cut(s) 413, 464
HpyF3I CTNAG 4 cut(s) 282, 403, 610, 856
Hsp92II CATG 5 cut(s) 311, 554, 581, 663, 866
Kzo9I GATC 4 cut(s) 56, 553, 569, 691
LpnPI CCDG 7 cut(s) 126, 165, 288, 349, 540, 600, 756
Lsp1109I GCAGC 4 cut(s) 403, 454, 559, 689
LweI GCATC 4 cut(s) 434, 469, 793, 820
MaeI CTAG 3 cut(s) 630, 636, 821
MaeIII GTNAC 5 cut(s) 331, 434, 532, 643, 663
MalI GATC 4 cut(s) 58, 555, 571, 693
MboI GATC 4 cut(s) 56, 553, 569, 691
MboII GAAGA 1 cut(s) 908
MfeI CAATTG 1 cut(s) 558
MflI RGATCY 2 cut(s) 56, 569
MhlI GDGCHC 1 cut(s) 262
MlsI TGGCCA 1 cut(s) 306
MluCI AATT 5 cut(s) 144, 229, 510, 558, 913
MluNI TGGCCA 1 cut(s) 306
MlyI GAGTC 3 cut(s) 131, 435, 908
MmeI TCCRAC 3 cut(s) 64, 115, 547
MnlI CCTC 7 cut(s) 198, 201, 289, 334, 383, 412, 448
Mox20I TGGCCA 1 cut(s) 306
MroXI GAANNNNTTC 1 cut(s) 758
MscI TGGCCA 1 cut(s) 306
MseI TTAA 2 cut(s) 788, 873
Msp20I TGGCCA 1 cut(s) 306
MspI CCGG 3 cut(s) 336, 527, 910
MspR9I CCNGG 2 cut(s) 337, 527
MunI CAATTG 1 cut(s) 558
Mva1269I GAATGC 1 cut(s) 346
MwoI GCNNNNNNNGC 2 cut(s) 413, 464
NciI CCSGG 2 cut(s) 337, 527
NcoI CCATGG 3 cut(s) 307, 659, 862
NdeI CATATG 1 cut(s) 904
NdeII GATC 4 cut(s) 56, 553, 569, 691
NlaIII CATG 5 cut(s) 311, 554, 581, 663, 866
NmuCI GTSAC 1 cut(s) 434
PctI GAATGC 1 cut(s) 346
PdmI GAANNNNTTC 1 cut(s) 758
PfeI GAWTC 1 cut(s) 155
PflMI CCANNNNNTGG 2 cut(s) 201, 583
PkrI GCNGC 4 cut(s) 418, 469, 549, 679
PleI GAGTC 3 cut(s) 131, 434, 907
PpsI GAGTC 3 cut(s) 131, 434, 907
PshBI ATTAAT 1 cut(s) 788
PspPI GGNCC 2 cut(s) 185, 626
PstI CTGCAG 2 cut(s) 434, 549
PsuI RGATCY 2 cut(s) 56, 569
RsaI GTAC 4 cut(s) 540, 640, 688, 730
RsaNI GTAC 4 cut(s) 539, 639, 687, 729
SaqAI TTAA 2 cut(s) 788, 873
SatI GCNGC 4 cut(s) 417, 468, 548, 678
Sau3AI GATC 4 cut(s) 56, 553, 569, 691
Sau96I GGNCC 2 cut(s) 185, 626
SchI GAGTC 3 cut(s) 131, 435, 908
ScrFI CCNGG 2 cut(s) 337, 527
SduI GDGCHC 1 cut(s) 262
SetI ASST 8 cut(s) 167, 211, 223, 252, 362, 637, 714, 885
SfaNI GCATC 4 cut(s) 434, 469, 793, 820
SfcI CTRYAG 4 cut(s) 430, 450, 545, 735
SinI GGWCC 2 cut(s) 185, 626
Sse9I AATT 5 cut(s) 144, 229, 510, 558, 913
SspMI CTAG 3 cut(s) 630, 636, 821
StyD4I CCNGG 2 cut(s) 335, 525
StyI CCWWGG 5 cut(s) 307, 376, 439, 659, 862
TaaI ACNGT 5 cut(s) 331, 538, 643, 673, 736
TasI AATT 5 cut(s) 144, 229, 510, 558, 913
TatI WGTACW 2 cut(s) 538, 686
TfiI GAWTC 1 cut(s) 155
Tru1I TTAA 2 cut(s) 788, 873
Tru9I TTAA 2 cut(s) 788, 873
TscAI CASTG 3 cut(s) 325, 439, 756
TseFI GTSAC 1 cut(s) 434
TseI GCWGC 4 cut(s) 416, 467, 547, 677
Tsp45I GTSAC 1 cut(s) 434
TspDTI ATGAA 1 cut(s) 312
TspRI CASTG 3 cut(s) 325, 439, 756
Van91I CCANNNNNTGG 2 cut(s) 201, 583
VpaK11BI GGWCC 2 cut(s) 185, 626
VspI ATTAAT 1 cut(s) 788
XapI RAATTY 2 cut(s) 144, 229
XmiI GTMKAC 1 cut(s) 844
XmnI GAANNNNTTC 1 cut(s) 758
XspI CTAG 3 cut(s) 630, 636, 821
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.