Rh1AG054900

Subtilisin-like serine endopeptidase family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000257
Physical Location & Seq
Reverse (-)
9027445 .. 9027810
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG054900.1

Sequence Viewer

Length: 366 bp
ATGGAGTTTGACATTATCACAATATCAATAGGACCTGATAAGCTAATCTCATTCAATGACGATCCTCTAGGAATTGGTACTTTTCATACAATGGAGAAAGGGATACTAACCACAAACCATTCAGGAAATGATGGCCCACTTGGTAACACAAAAAGTCTAACACCATGGATGCTTACAGTTGCAGCAAGTAGCACAGACTGTCGGATCATTGACAACGTTGTCCTTGGAAATGGAAGCACGCTAGTTGGGATTTCATTGAACCCTTTCACATTAAATGGAACAAAGTTTCCATTGGTATATGGAAACAGTCACTGCTCTCAGTCCTCAGCTGGGAATTGTTCAGCTAGCTGCCTAGACAGTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 PA Peptidase_S8

Protein Analysis

121

Amino Acids

12.67

Weight (kDa)

4.63

Isoelectric Point (pI)

15.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000257)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46840 AT3G46850 AT5G58820 AT5G58830 AT5G58840 AT5G58840 AT5G58840 AT5G59090 AT5G59090 AT5G59090 AT5G59100 AT5G59120 AT5G59130 AT5G59130 AT5G59130 AT5G59130 AT5G59190
fragaria_vesca FvH4_3g37170 FvH4_7g02830 FvH4_7g02840
malus_domestica MD02G1288900.v1.1 MD02G1289100.v1.1 MD02G1289300.v1.1 MD02G1289400.v1.1 MD02G1289500.v1.1 MD03G1083800.v1.1 MD03G1084000.v1.1 MD07G1037500.v1.1 MD07G1037600.v1.1 MD07G1037700.v1.1 MD07G1039300.v1.1 MD11G1091900.v1.1 MD11G1092000.v1.1
prunus_persica Prupe.2G032800_v2.0.a1 Prupe.2G033000_v2.0.a1 Prupe.2G033100_v2.0.a1 Prupe.2G035100_v2.0.a1 Prupe.6G067600_v2.0.a1 Prupe.6G067600_v2.0.a1 Prupe.6G067700_v2.0.a1 Prupe.6G067800_v2.0.a1
pyrus_communis pycom02g24440 pycom02g24470 pycom02g24480 pycom02g24500 pycom02g24510 pycom03g06650 pycom07g02730 pycom11g07710 pycom11g07720
rosa_chinensis RchiOBHm_Chr1g0323281 RchiOBHm_Chr1g0323291 RchiOBHm_Chr1g0323311 RchiOBHm_Chr1g0323341 RchiOBHm_Chr1g0323351 RchiOBHm_Chr1g0323371 RchiOBHm_Chr1g0323431 RchiOBHm_Chr1g0323461 RchiOBHm_Chr1g0324031 RchiOBHm_Chr5g0066891 RchiOBHm_Chr5g0066901
rosa_laevigata RLG00000030004 RLG00000030235 RLG00000030328 RLG00000030329 RLG00000030334 RLG00000030336 RLG00000030337 RLG00000030338 RLG00000030339 RLG00000030340 RLG00000035885 RLG00000035886 RLG00000035888 RLG00000035890
rosa_multiflora Rmu_co8481685.1_g000001 Rmu_co8485349.1_g000001 Rmu_sc0000605.1_g000061 Rmu_sc0000804.1_g000004 Rmu_sc0000804.1_g000008 Rmu_sc0002263.1_g000074 Rmu_sc0002263.1_g000076 Rmu_sc0002263.1_g000077 Rmu_sc0003418.1_g000005 Rmu_sc0003418.1_g000007 Rmu_sc0003418.1_g000008 Rmu_sc0008378.1_g000013 Rmu_sc0010151.1_g000012
rosa_roxburghii Rroxscaffold_1G00014220 Rroxscaffold_1G00014230 Rroxscaffold_4G00325970 Rroxscaffold_4G00326160 Rroxscaffold_4G00326570 Rroxscaffold_4G00326580 Rroxscaffold_4G00326650 Rroxscaffold_4G00326670 Rroxscaffold_4G00326680 Rroxscaffold_4G00326700
rosa_rugosa Rorug01G0037300 Rorug01G0037400 Rorug01G0037600 Rorug01G0037700 Rorug01G0037800 Rorug01G0037800 Rorug01G0042100 Rorug01G0065000 Rorug05G0379300 Rorug05G0379400
rosa_samantha Rh1AG054700 Rh1AG054900 Rh1AG055000 Rh1AG055200 Rh1AG055300 Rh1BG047500 Rh1CG055800 Rh1CG056000 Rh1CG061400 Rh1DG059900 Rh1DG060200 Rh5AG439100 Rh5AG439200 Rh5BG455900 Rh5CG478000 Rh5CG478300
rosa_wichuraiana Rw1G004750 Rw1G004760 Rw1G004770 Rw1G004790 Rw1G005080 Rw1G006510 Rw5G041060 Rw5G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 218
AclI AACGTT 1 cut(s) 216
AclWI GGATC 2 cut(s) 56, 212
AfaI GTAC 1 cut(s) 79
AfiI CCNNNNNNNGG 1 cut(s) 330
AgsI TTSAA 2 cut(s) 55, 259
AloI GAACNNNNNNTCC 2 cut(s) 271, 303
AluBI AGCT 4 cut(s) 43, 329, 344, 348
AluI AGCT 4 cut(s) 43, 329, 344, 348
AlwI GGATC 2 cut(s) 56, 212
AlwNI CAGNNNCTG 1 cut(s) 312
AoxI GGCC 1 cut(s) 133
ApeKI GCWGC 2 cut(s) 182, 348
Asp700I GAANNNNTTC 1 cut(s) 263
AspS9I GGNCC 2 cut(s) 32, 134
AsuNHI GCTAGC 1 cut(s) 344
AvaII GGWCC 1 cut(s) 32
BbvCI CCTCAGC 1 cut(s) 325
BbvI GCAGC 2 cut(s) 194, 335
BccI CCATC 1 cut(s) 125
BciVI GTATCC 1 cut(s) 96
BfaI CTAG 4 cut(s) 68, 242, 345, 353
BfuI GTATCC 1 cut(s) 96
BisI GCNGC 2 cut(s) 183, 349
BlsI GCNGC 2 cut(s) 184, 350
Bme18I GGWCC 1 cut(s) 32
BmgT120I GGNCC 2 cut(s) 32, 134
BmsI GCATC 1 cut(s) 159
BmtI GCTAGC 1 cut(s) 348
Bpu10I CCTNAGC 1 cut(s) 325
BsaJI CCNNGG 2 cut(s) 164, 223
Bsc4I CCNNNNNNNGG 1 cut(s) 330
BseDI CCNNGG 2 cut(s) 164, 223
BseGI GGATG 1 cut(s) 174
BseLI CCNNNNNNNGG 1 cut(s) 330
BseMII CTCAG 2 cut(s) 332, 339
BseXI GCAGC 2 cut(s) 194, 335
BseYI CCCAGC 1 cut(s) 329
BshFI GGCC 1 cut(s) 135
BslI CCNNNNNNNGG 1 cut(s) 330
BsnI GGCC 1 cut(s) 135
Bsp143I GATC 2 cut(s) 61, 204
Bsp19I CCATGG 1 cut(s) 164
BspANI GGCC 1 cut(s) 135
BspCNI CTCAG 2 cut(s) 331, 338
BspOI GCTAGC 1 cut(s) 348
BspPI GGATC 2 cut(s) 56, 212
BssECI CCNNGG 2 cut(s) 164, 223
BssMI GATC 2 cut(s) 61, 204
BssT1I CCWWGG 2 cut(s) 164, 223
Bst4CI ACNGT 4 cut(s) 178, 200, 308, 359
BstC8I GCNNGC 2 cut(s) 239, 346
BstDEI CTNAG 2 cut(s) 318, 325
BstDSI CCRYGG 1 cut(s) 164
BstF5I GGATG 1 cut(s) 174
BstKTI GATC 2 cut(s) 64, 207
BstMBI GATC 2 cut(s) 61, 204
BstV1I GCAGC 2 cut(s) 194, 335
BsuI GTATCC 1 cut(s) 96
BsuRI GGCC 1 cut(s) 135
BtgI CCRYGG 1 cut(s) 164
BtsCI GGATG 1 cut(s) 174
BtsI GCAGTG 1 cut(s) 310
BtsIMutI CAGTG 2 cut(s) 310, 364
Cac8I GCNNGC 2 cut(s) 239, 346
CaiI CAGNNNCTG 1 cut(s) 312
Cfr13I GGNCC 2 cut(s) 32, 134
Csp6I GTAC 1 cut(s) 78
CviAII CATG 1 cut(s) 165
CviJI RGCY 5 cut(s) 43, 135, 329, 344, 348
CviKI_1 RGCY 5 cut(s) 43, 135, 329, 344, 348
CviQI GTAC 1 cut(s) 78
DdeI CTNAG 2 cut(s) 318, 325
DpnI GATC 2 cut(s) 63, 206
DpnII GATC 2 cut(s) 61, 204
DrdI GACNNNNNNGTC 1 cut(s) 218
DseDI GACNNNNNNGTC 1 cut(s) 218
Eco130I CCWWGG 2 cut(s) 164, 223
Eco47I GGWCC 1 cut(s) 32
EcoO109I RGGNCCY 1 cut(s) 32
EcoT14I CCWWGG 2 cut(s) 164, 223
ErhI CCWWGG 2 cut(s) 164, 223
FaeI CATG 1 cut(s) 168
FaiI YATR 4 cut(s) 87, 166, 298, 300
FatI CATG 1 cut(s) 164
Fnu4HI GCNGC 2 cut(s) 183, 349
FokI GGATG 1 cut(s) 181
Fsp4HI GCNGC 2 cut(s) 183, 349
FspBI CTAG 4 cut(s) 68, 242, 345, 353
GluI GCNGC 2 cut(s) 183, 349
GsaI CCCAGC 1 cut(s) 333
HaeIII GGCC 1 cut(s) 135
Hin1II CATG 1 cut(s) 168
Hpy188I TCNGA 1 cut(s) 204
Hpy188III TCNNGA 1 cut(s) 123
HpyCH4III ACNGT 4 cut(s) 178, 200, 308, 359
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 1 cut(s) 182
HpyF3I CTNAG 2 cut(s) 318, 325
HpySE526I ACGT 1 cut(s) 216
Hsp92II CATG 1 cut(s) 168
Kzo9I GATC 2 cut(s) 61, 204
LpnPI CCDG 3 cut(s) 48, 108, 315
Lsp1109I GCAGC 2 cut(s) 194, 335
LweI GCATC 1 cut(s) 159
MaeI CTAG 4 cut(s) 68, 242, 345, 353
MaeII ACGT 1 cut(s) 216
MaeIII GTNAC 2 cut(s) 143, 308
MalI GATC 2 cut(s) 63, 206
MboI GATC 2 cut(s) 61, 204
MluCI AATT 2 cut(s) 72, 334
MmeI TCCRAC 1 cut(s) 182
MnlI CCTC 2 cut(s) 75, 334
MroXI GAANNNNTTC 1 cut(s) 263
MseI TTAA 2 cut(s) 272, 364
MspA1I CMGCKG 1 cut(s) 329
NcoI CCATGG 1 cut(s) 164
NdeII GATC 2 cut(s) 61, 204
NheI GCTAGC 1 cut(s) 344
NlaIII CATG 1 cut(s) 168
NmuCI GTSAC 1 cut(s) 308
PdmI GAANNNNTTC 1 cut(s) 263
PkrI GCNGC 2 cut(s) 184, 350
PpuMI RGGWCCY 1 cut(s) 32
Psp1406I AACGTT 1 cut(s) 216
Psp5II RGGWCCY 1 cut(s) 32
PspFI CCCAGC 1 cut(s) 329
PspPI GGNCC 2 cut(s) 32, 134
PspPPI RGGWCCY 1 cut(s) 32
PstNI CAGNNNCTG 1 cut(s) 312
PvuII CAGCTG 1 cut(s) 329
RsaI GTAC 1 cut(s) 79
RsaNI GTAC 1 cut(s) 78
SaqAI TTAA 2 cut(s) 272, 364
SatI GCNGC 2 cut(s) 183, 349
Sau3AI GATC 2 cut(s) 61, 204
Sau96I GGNCC 2 cut(s) 32, 134
SetI ASST 6 cut(s) 37, 45, 219, 331, 346, 350
SfaNI GCATC 1 cut(s) 159
SinI GGWCC 1 cut(s) 32
Sse9I AATT 2 cut(s) 72, 334
SspMI CTAG 4 cut(s) 68, 242, 345, 353
StyI CCWWGG 2 cut(s) 164, 223
TaaI ACNGT 4 cut(s) 178, 200, 308, 359
TaiI ACGT 1 cut(s) 219
TasI AATT 2 cut(s) 72, 334
Tru1I TTAA 2 cut(s) 272, 364
Tru9I TTAA 2 cut(s) 272, 364
TscAI CASTG 2 cut(s) 317, 364
TseFI GTSAC 1 cut(s) 308
TseI GCWGC 2 cut(s) 182, 348
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 2 cut(s) 74, 243
TspRI CASTG 2 cut(s) 317, 364
VpaK11BI GGWCC 1 cut(s) 32
XmnI GAANNNNTTC 1 cut(s) 263
XspI CTAG 4 cut(s) 68, 242, 345, 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.