Rh1CG056000

Subtilisin-like serine endopeptidase family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000257
Physical Location & Seq
Reverse (-)
10871838 .. 10872263
426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG056000.1

Sequence Viewer

Length: 426 bp
ATGAAGGAAGTAGTGTCTGTTTTTCCAAGCAGAACTTTCCAGCTTCGAAGAACAAGATCTTGGGACTTTATCGGGTTGTATGAGAAAATCCATCAAAATGCAACTGTTGAGAGTGATGTAATTATTGGAGTGTTTGACAGTGGAATTTGGCATGAATCTAATGAAGGTTTTGGTCCTTCCCCCAAGAAATGGAAAGGTGCTTGTGCAGGCAGTAAAAATTTCACTTGTCACAACAAGATCATTGGAGCTCGGTTTTACGAGCCAGCAGATTCTGCAAGAGATGCAAATGGTCATGGAACCCATGTTACCTCAACAGCAGCAGGGAACACCGTTAAGGATGTTAGCTATTACGGCTATTACGGAATAGCACAAGGCACTGCAACAGGAGGCGTTCCCTCTGCAAGAATTGCTGCATATAGTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 PA Peptidase_S8

Protein Analysis

141

Amino Acids

15.31

Weight (kDa)

8.91

Isoelectric Point (pI)

41.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S8 PF00082 38 - 140 1.2e-07 Subtilase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000257)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46840 AT3G46850 AT5G58820 AT5G58830 AT5G58840 AT5G58840 AT5G58840 AT5G59090 AT5G59090 AT5G59090 AT5G59100 AT5G59120 AT5G59130 AT5G59130 AT5G59130 AT5G59130 AT5G59190
fragaria_vesca FvH4_3g37170 FvH4_7g02830 FvH4_7g02840
malus_domestica MD02G1288900.v1.1 MD02G1289100.v1.1 MD02G1289300.v1.1 MD02G1289400.v1.1 MD02G1289500.v1.1 MD03G1083800.v1.1 MD03G1084000.v1.1 MD07G1037500.v1.1 MD07G1037600.v1.1 MD07G1037700.v1.1 MD07G1039300.v1.1 MD11G1091900.v1.1 MD11G1092000.v1.1
prunus_persica Prupe.2G032800_v2.0.a1 Prupe.2G033000_v2.0.a1 Prupe.2G033100_v2.0.a1 Prupe.2G035100_v2.0.a1 Prupe.6G067600_v2.0.a1 Prupe.6G067600_v2.0.a1 Prupe.6G067700_v2.0.a1 Prupe.6G067800_v2.0.a1
pyrus_communis pycom02g24440 pycom02g24470 pycom02g24480 pycom02g24500 pycom02g24510 pycom03g06650 pycom07g02730 pycom11g07710 pycom11g07720
rosa_chinensis RchiOBHm_Chr1g0323281 RchiOBHm_Chr1g0323291 RchiOBHm_Chr1g0323311 RchiOBHm_Chr1g0323341 RchiOBHm_Chr1g0323351 RchiOBHm_Chr1g0323371 RchiOBHm_Chr1g0323431 RchiOBHm_Chr1g0323461 RchiOBHm_Chr1g0324031 RchiOBHm_Chr5g0066891 RchiOBHm_Chr5g0066901
rosa_laevigata RLG00000030004 RLG00000030235 RLG00000030328 RLG00000030329 RLG00000030334 RLG00000030336 RLG00000030337 RLG00000030338 RLG00000030339 RLG00000030340 RLG00000035885 RLG00000035886 RLG00000035888 RLG00000035890
rosa_multiflora Rmu_co8481685.1_g000001 Rmu_co8485349.1_g000001 Rmu_sc0000605.1_g000061 Rmu_sc0000804.1_g000004 Rmu_sc0000804.1_g000008 Rmu_sc0002263.1_g000074 Rmu_sc0002263.1_g000076 Rmu_sc0002263.1_g000077 Rmu_sc0003418.1_g000005 Rmu_sc0003418.1_g000007 Rmu_sc0003418.1_g000008 Rmu_sc0008378.1_g000013 Rmu_sc0010151.1_g000012
rosa_roxburghii Rroxscaffold_1G00014220 Rroxscaffold_1G00014230 Rroxscaffold_4G00325970 Rroxscaffold_4G00326160 Rroxscaffold_4G00326570 Rroxscaffold_4G00326580 Rroxscaffold_4G00326650 Rroxscaffold_4G00326670 Rroxscaffold_4G00326680 Rroxscaffold_4G00326700
rosa_rugosa Rorug01G0037300 Rorug01G0037400 Rorug01G0037600 Rorug01G0037700 Rorug01G0037800 Rorug01G0037800 Rorug01G0042100 Rorug01G0065000 Rorug05G0379300 Rorug05G0379400
rosa_samantha Rh1AG054700 Rh1AG054900 Rh1AG055000 Rh1AG055200 Rh1AG055300 Rh1BG047500 Rh1CG055800 Rh1CG056000 Rh1CG061400 Rh1DG059900 Rh1DG060200 Rh5AG439100 Rh5AG439200 Rh5BG455900 Rh5CG478000 Rh5CG478300
rosa_wichuraiana Rw1G004750 Rw1G004760 Rw1G004770 Rw1G004790 Rw1G005080 Rw1G006510 Rw5G041060 Rw5G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 189
AcsI RAATTY 2 cut(s) 144, 217
AfiI CCNNNNNNNGG 1 cut(s) 189
AjuI GAANNNNNNNTTGG 2 cut(s) 43, 75
AluBI AGCT 3 cut(s) 43, 248, 345
AluI AGCT 3 cut(s) 43, 248, 345
Alw21I GWGCWC 1 cut(s) 250
AlwNI CAGNNNCTG 1 cut(s) 272
ApeKI GCWGC 2 cut(s) 317, 410
ApoI RAATTY 2 cut(s) 144, 217
AspS9I GGNCC 1 cut(s) 173
AsuII TTCGAA 1 cut(s) 46
AvaII GGWCC 1 cut(s) 173
BanII GRGCYC 1 cut(s) 250
Bbv12I GWGCWC 1 cut(s) 250
BbvI GCAGC 2 cut(s) 329, 397
BccI CCATC 1 cut(s) 99
BceAI ACGGC 1 cut(s) 367
BfmI CTRYAG 1 cut(s) 422
BglII AGATCT 1 cut(s) 56
BisI GCNGC 2 cut(s) 318, 411
BlsI GCNGC 2 cut(s) 319, 412
Bme18I GGWCC 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 1 cut(s) 298
BmsI GCATC 1 cut(s) 271
Bpu14I TTCGAA 1 cut(s) 46
Bsc4I CCNNNNNNNGG 1 cut(s) 189
BseGI GGATG 1 cut(s) 343
BseLI CCNNNNNNNGG 1 cut(s) 189
BseXI GCAGC 2 cut(s) 329, 397
BsgI GTGCAG 1 cut(s) 225
BsiHKAI GWGCWC 1 cut(s) 250
BslFI GGGAC 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 189
BsmFI GGGAC 1 cut(s) 77
Bsp119I TTCGAA 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 250
Bsp143I GATC 2 cut(s) 56, 237
BspLI GGNNCC 1 cut(s) 298
BspT104I TTCGAA 1 cut(s) 46
BssMI GATC 2 cut(s) 56, 237
Bst4CI ACNGT 3 cut(s) 106, 140, 331
BstAPI GCANNNNNTGC 3 cut(s) 272, 281, 407
BstBI TTCGAA 1 cut(s) 46
BstC8I GCNNGC 2 cut(s) 208, 264
BstF5I GGATG 1 cut(s) 343
BstKTI GATC 2 cut(s) 59, 240
BstMBI GATC 2 cut(s) 56, 237
BstMWI GCNNNNNNNGC 4 cut(s) 272, 281, 351, 407
BstSFI CTRYAG 1 cut(s) 422
BstV1I GCAGC 2 cut(s) 329, 397
BstX2I RGATCY 1 cut(s) 56
BstYI RGATCY 1 cut(s) 56
BtsCI GGATG 1 cut(s) 343
BtsI GCAGTG 1 cut(s) 375
BtsIMutI CAGTG 2 cut(s) 145, 375
Cac8I GCNNGC 2 cut(s) 208, 264
CaiI CAGNNNCTG 1 cut(s) 272
Cfr13I GGNCC 1 cut(s) 173
CviAII CATG 3 cut(s) 152, 293, 302
CviJI RGCY 5 cut(s) 43, 248, 262, 345, 354
CviKI_1 RGCY 5 cut(s) 43, 248, 262, 345, 354
DpnI GATC 2 cut(s) 58, 239
DpnII GATC 2 cut(s) 56, 237
Ecl136II GAGCTC 1 cut(s) 248
Eco24I GRGCYC 1 cut(s) 250
Eco47I GGWCC 1 cut(s) 173
Eco53kI GAGCTC 1 cut(s) 248
EcoICRI GAGCTC 1 cut(s) 248
EcoT38I GRGCYC 1 cut(s) 250
FaeI CATG 3 cut(s) 155, 296, 305
FaiI YATR 6 cut(s) 81, 153, 294, 303, 415, 417
FalI AAGNNNNNCTT 2 cut(s) 19, 51
FaqI GGGAC 1 cut(s) 77
FatI CATG 3 cut(s) 151, 292, 301
Fnu4HI GCNGC 2 cut(s) 318, 411
FokI GGATG 1 cut(s) 350
FriOI GRGCYC 1 cut(s) 250
Fsp4HI GCNGC 2 cut(s) 318, 411
GluI GCNGC 2 cut(s) 318, 411
Hin1II CATG 3 cut(s) 155, 296, 305
HinfI GANTC 2 cut(s) 155, 269
HpyAV CCTTC 2 cut(s) 158, 186
HpyCH4III ACNGT 3 cut(s) 106, 140, 331
HpyCH4V TGCA 7 cut(s) 101, 206, 275, 284, 380, 401, 413
HpyF10VI GCNNNNNNNGC 4 cut(s) 272, 281, 351, 407
Hsp92II CATG 3 cut(s) 155, 296, 305
Kzo9I GATC 2 cut(s) 56, 237
LmnI GCTCC 1 cut(s) 245
LpnPI CCDG 5 cut(s) 53, 192, 276, 306, 369
Lsp1109I GCAGC 2 cut(s) 329, 397
LweI GCATC 1 cut(s) 271
MaeIII GTNAC 2 cut(s) 227, 304
MalI GATC 2 cut(s) 58, 239
MboI GATC 2 cut(s) 56, 237
MboII GAAGA 1 cut(s) 60
MflI RGATCY 1 cut(s) 56
MhlI GDGCHC 1 cut(s) 250
MluCI AATT 4 cut(s) 120, 144, 217, 405
MnlI CCTC 3 cut(s) 319, 380, 406
MseI TTAA 1 cut(s) 333
MslI CAYNNNNRTG 1 cut(s) 96
MwoI GCNNNNNNNGC 4 cut(s) 272, 281, 351, 407
NdeII GATC 2 cut(s) 56, 237
NlaIII CATG 3 cut(s) 155, 296, 305
NlaIV GGNNCC 1 cut(s) 298
NmuCI GTSAC 1 cut(s) 227
NspV TTCGAA 1 cut(s) 46
PfeI GAWTC 2 cut(s) 155, 269
PflMI CCANNNNNTGG 1 cut(s) 189
PkrI GCNGC 2 cut(s) 319, 412
Psp124BI GAGCTC 1 cut(s) 250
PspN4I GGNNCC 1 cut(s) 298
PspPI GGNCC 1 cut(s) 173
PsrI GAACNNNNNNTAC 2 cut(s) 289, 321
PstNI CAGNNNCTG 1 cut(s) 272
PsuI RGATCY 1 cut(s) 56
RseI CAYNNNNRTG 1 cut(s) 96
SacI GAGCTC 1 cut(s) 250
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 2 cut(s) 318, 411
Sau3AI GATC 2 cut(s) 56, 237
Sau96I GGNCC 1 cut(s) 173
SduI GDGCHC 1 cut(s) 250
SetI ASST 6 cut(s) 45, 169, 199, 250, 311, 347
SfaNI GCATC 1 cut(s) 271
SfcI CTRYAG 1 cut(s) 422
SfuI TTCGAA 1 cut(s) 46
SinI GGWCC 1 cut(s) 173
SmiMI CAYNNNNRTG 1 cut(s) 96
Sse9I AATT 4 cut(s) 120, 144, 217, 405
SstI GAGCTC 1 cut(s) 250
TaaI ACNGT 3 cut(s) 106, 140, 331
TaqI TCGA 1 cut(s) 46
TasI AATT 4 cut(s) 120, 144, 217, 405
TfiI GAWTC 2 cut(s) 155, 269
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TscAI CASTG 2 cut(s) 145, 382
TseFI GTSAC 1 cut(s) 227
TseI GCWGC 2 cut(s) 317, 410
Tsp45I GTSAC 1 cut(s) 227
TspDTI ATGAA 3 cut(s) 17, 168, 177
TspGWI ACGGA 1 cut(s) 375
TspRI CASTG 2 cut(s) 145, 382
Van91I CCANNNNNTGG 1 cut(s) 189
VpaK11BI GGWCC 1 cut(s) 173
XapI RAATTY 2 cut(s) 144, 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.