pycom11g07710

cucumisin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000257
Physical Location & Seq
Reverse (-)
5902793 .. 5906235
3443 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g07710.6

Sequence Viewer

Length: 1011 bp
ATGAATAGTACCAACAATTCTACCGGTGAATTTGCTTATGGATCTGGACATATCAATCCTGTAGAAGCTGTAAACCCAGGGCCTGTGTATGAAGCTTCGGAAGAAGATTATATAAAGTTGTTGTGCAGAGTGTTTGACGAAGGGTATGCAAGGGATCTTAATTACCCTTCAATGGGAGCTAAAGTTGCAGAAATGGAGCCTTTTACAGTGAATTTTCATAGAAGAGTTAATAATGTTGGCCTCCCAAACTCTACTTACAAAGCCAGAATCTCCTCGAACTCCAAAGTTGATATCAAAGTGGTTCCCGAAGTTCTTTCGTTCGAGTCTTTGAACGAGGAGAGGACTTTTGATGTGATTGTCACTGGAAGCGGTTTGCCAGATCAATCTCAAGTGTCAGGATCGCTGGTTTGGACTGATGGTGTTCACAGCAGTCACAAGCGAGTTCTTATCCTTGCTATCTCTCTTTCTCTCAGTTTGGAGGAAACTTTATTGGTCAGAAGTTATAAAAGGAGTTTCAATGGATTTGCAGCCAACCTCACTGACCAAGAAAGGGAGAAAATTGCGAGCATGGAAGAAATAGTCTCTGTCTTTCCAAGCATAAGATTGGAACCCCAAACAACAAGATCTTGGGACTTCATGGGTTTCGATGAGAAAGTCAGTCGAAATGCCACAACTGAAAGTGATATCATTGTTGGTGTGATTGACACTGGAATTTGGCCTGAAGCTGAGGGCTTTAAAGATGAAGGTTTCGGTCCTTCTCCTAAGAAGTGGAAAGGTGTTTGTGAAGGCGGCAAAAATTTCACCTGCAACAAGAAGATTGTTGGTGCTCGATATTACTTAACAGACTCTGCAAGGGATTTCCGGGGTCATGGAACTCACTGTGCATCAATTGTAGCTGGAAGTCCTGTAAAGGAAGTAAGCTTTTACGGACTAGCAAATGGTACTGCAAGAGGAGGTGTACCTGCTGCGAGAATCGCAGCATATAAAGTCTGTGATCTTGATTTCGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 PA Peptidase_S8

Protein Analysis

337

Amino Acids

36.81

Weight (kDa)

5.52

Isoelectric Point (pI)

36.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000257)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46840 AT3G46850 AT5G58820 AT5G58830 AT5G58840 AT5G58840 AT5G58840 AT5G59090 AT5G59090 AT5G59090 AT5G59100 AT5G59120 AT5G59130 AT5G59130 AT5G59130 AT5G59130 AT5G59190
fragaria_vesca FvH4_3g37170 FvH4_7g02830 FvH4_7g02840
malus_domestica MD02G1288900.v1.1 MD02G1289100.v1.1 MD02G1289300.v1.1 MD02G1289400.v1.1 MD02G1289500.v1.1 MD03G1083800.v1.1 MD03G1084000.v1.1 MD07G1037500.v1.1 MD07G1037600.v1.1 MD07G1037700.v1.1 MD07G1039300.v1.1 MD11G1091900.v1.1 MD11G1092000.v1.1
prunus_persica Prupe.2G032800_v2.0.a1 Prupe.2G033000_v2.0.a1 Prupe.2G033100_v2.0.a1 Prupe.2G035100_v2.0.a1 Prupe.6G067600_v2.0.a1 Prupe.6G067600_v2.0.a1 Prupe.6G067700_v2.0.a1 Prupe.6G067800_v2.0.a1
pyrus_communis pycom02g24440 pycom02g24470 pycom02g24480 pycom02g24500 pycom02g24510 pycom03g06650 pycom07g02730 pycom11g07710 pycom11g07720
rosa_chinensis RchiOBHm_Chr1g0323281 RchiOBHm_Chr1g0323291 RchiOBHm_Chr1g0323311 RchiOBHm_Chr1g0323341 RchiOBHm_Chr1g0323351 RchiOBHm_Chr1g0323371 RchiOBHm_Chr1g0323431 RchiOBHm_Chr1g0323461 RchiOBHm_Chr1g0324031 RchiOBHm_Chr5g0066891 RchiOBHm_Chr5g0066901
rosa_laevigata RLG00000030004 RLG00000030235 RLG00000030328 RLG00000030329 RLG00000030334 RLG00000030336 RLG00000030337 RLG00000030338 RLG00000030339 RLG00000030340 RLG00000035885 RLG00000035886 RLG00000035888 RLG00000035890
rosa_multiflora Rmu_co8481685.1_g000001 Rmu_co8485349.1_g000001 Rmu_sc0000605.1_g000061 Rmu_sc0000804.1_g000004 Rmu_sc0000804.1_g000008 Rmu_sc0002263.1_g000074 Rmu_sc0002263.1_g000076 Rmu_sc0002263.1_g000077 Rmu_sc0003418.1_g000005 Rmu_sc0003418.1_g000007 Rmu_sc0003418.1_g000008 Rmu_sc0008378.1_g000013 Rmu_sc0010151.1_g000012
rosa_roxburghii Rroxscaffold_1G00014220 Rroxscaffold_1G00014230 Rroxscaffold_4G00325970 Rroxscaffold_4G00326160 Rroxscaffold_4G00326570 Rroxscaffold_4G00326580 Rroxscaffold_4G00326650 Rroxscaffold_4G00326670 Rroxscaffold_4G00326680 Rroxscaffold_4G00326700
rosa_rugosa Rorug01G0037300 Rorug01G0037400 Rorug01G0037600 Rorug01G0037700 Rorug01G0037800 Rorug01G0037800 Rorug01G0042100 Rorug01G0065000 Rorug05G0379300 Rorug05G0379400
rosa_samantha Rh1AG054700 Rh1AG054900 Rh1AG055000 Rh1AG055200 Rh1AG055300 Rh1BG047500 Rh1CG055800 Rh1CG056000 Rh1CG061400 Rh1DG059900 Rh1DG060200 Rh5AG439100 Rh5AG439200 Rh5BG455900 Rh5CG478000 Rh5CG478300
rosa_wichuraiana Rw1G004750 Rw1G004760 Rw1G004770 Rw1G004790 Rw1G005080 Rw1G006510 Rw5G041060 Rw5G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 504
AarI CACCTGC 1 cut(s) 812
Acc36I ACCTGC 2 cut(s) 812, 970
AciI CCGC 2 cut(s) 369, 789
AclWI GGATC 3 cut(s) 49, 162, 406
AcsI RAATTY 4 cut(s) 29, 211, 711, 796
AcuI CTGAAG 1 cut(s) 741
AfaI GTAC 3 cut(s) 10, 943, 960
AfiI CCNNNNNNNGG 3 cut(s) 172, 173, 550
AgeI ACCGGT 1 cut(s) 23
AgsI TTSAA 3 cut(s) 171, 331, 517
AjnI CCWGG 1 cut(s) 76
AluBI AGCT 6 cut(s) 68, 95, 179, 725, 896, 921
AluI AGCT 6 cut(s) 68, 95, 179, 725, 896, 921
Alw21I GWGCWC 1 cut(s) 829
Alw26I GTCTC 1 cut(s) 586
AlwI GGATC 3 cut(s) 49, 162, 406
AlwNI CAGNNNCTG 2 cut(s) 83, 848
AoxI GGCC 3 cut(s) 80, 238, 716
ApeKI GCWGC 3 cut(s) 527, 965, 977
ApoI RAATTY 4 cut(s) 29, 211, 711, 796
AsiGI ACCGGT 1 cut(s) 23
AspS9I GGNCC 2 cut(s) 80, 752
AsuC2I CCSGG 1 cut(s) 863
AsuHPI GGTGA 2 cut(s) 38, 793
AvaII GGWCC 1 cut(s) 752
Bbv12I GWGCWC 1 cut(s) 829
BbvCI CCTCAGC 1 cut(s) 726
BbvI GCAGC 3 cut(s) 539, 952, 989
BccI CCATC 1 cut(s) 410
BcgI CGANNNNNNTGC 2 cut(s) 128, 162
BciT130I CCWGG 1 cut(s) 78
BcnI CCSGG 1 cut(s) 863
BcoDI GTCTC 1 cut(s) 586
BfaI CTAG 1 cut(s) 932
BfmI CTRYAG 1 cut(s) 60
BfuAI ACCTGC 2 cut(s) 812, 970
BglII AGATCT 1 cut(s) 623
BisI GCNGC 4 cut(s) 528, 790, 966, 978
BlsI GCNGC 4 cut(s) 529, 791, 967, 979
Bme1390I CCNGG 2 cut(s) 78, 863
Bme18I GGWCC 1 cut(s) 752
BmgT120I GGNCC 2 cut(s) 80, 752
BmiI GGNNCC 3 cut(s) 198, 303, 609
BmrFI CCNGG 2 cut(s) 78, 863
BmsI GCATC 1 cut(s) 893
Bpu10I CCTNAGC 1 cut(s) 726
BpuEI CTTGAG 1 cut(s) 372
BpuMI CCSGG 1 cut(s) 863
BsaJI CCNNGG 3 cut(s) 76, 77, 862
BsaWI WCCGGW 1 cut(s) 23
BsaXI ACNNNNNCTCC 2 cut(s) 168, 198
Bsc4I CCNNNNNNNGG 3 cut(s) 172, 173, 550
Bse118I RCCGGY 1 cut(s) 23
Bse1I ACTGG 2 cut(s) 367, 712
BseBI CCWGG 1 cut(s) 78
BseDI CCNNGG 3 cut(s) 76, 77, 862
BseLI CCNNNNNNNGG 3 cut(s) 172, 173, 550
BseMII CTCAG 2 cut(s) 484, 717
BseNI ACTGG 2 cut(s) 367, 712
BseRI GAGGAG 3 cut(s) 262, 350, 966
BseXI GCAGC 3 cut(s) 539, 952, 989
BsgI GTGCAG 1 cut(s) 145
BshFI GGCC 3 cut(s) 82, 240, 718
BshTI ACCGGT 1 cut(s) 23
BsiHKAI GWGCWC 1 cut(s) 829
BsiSI CCGG 2 cut(s) 24, 862
BslFI GGGAC 1 cut(s) 644
BslI CCNNNNNNNGG 3 cut(s) 172, 173, 550
BsmAI GTCTC 1 cut(s) 586
BsmFI GGGAC 1 cut(s) 644
BsnI GGCC 3 cut(s) 82, 240, 718
Bsp1286I GDGCHC 1 cut(s) 829
Bsp143I GATC 6 cut(s) 41, 154, 379, 398, 623, 994
BspACI CCGC 2 cut(s) 369, 789
BspANI GGCC 3 cut(s) 82, 240, 718
BspCNI CTCAG 2 cut(s) 483, 718
BspLI GGNNCC 3 cut(s) 198, 303, 609
BspMI ACCTGC 2 cut(s) 812, 970
BspPI GGATC 3 cut(s) 49, 162, 406
BsrFI RCCGGY 1 cut(s) 23
BsrI ACTGG 2 cut(s) 367, 712
BssAI RCCGGY 1 cut(s) 23
BssECI CCNNGG 3 cut(s) 76, 77, 862
BssMI GATC 6 cut(s) 41, 154, 379, 398, 623, 994
Bst2UI CCWGG 1 cut(s) 78
Bst4CI ACNGT 2 cut(s) 208, 881
Bst6I CTCTTC 1 cut(s) 217
BstC8I GCNNGC 1 cut(s) 565
BstDEI CTNAG 3 cut(s) 470, 726, 762
BstKTI GATC 6 cut(s) 44, 157, 382, 401, 626, 997
BstMAI GTCTC 1 cut(s) 586
BstMBI GATC 6 cut(s) 41, 154, 379, 398, 623, 994
BstMWI GCNNNNNNNGC 2 cut(s) 185, 974
BstNI CCWGG 1 cut(s) 78
BstSCI CCNGG 2 cut(s) 76, 861
BstSFI CTRYAG 1 cut(s) 60
BstV1I GCAGC 3 cut(s) 539, 952, 989
BstX2I RGATCY 3 cut(s) 41, 154, 623
BstYI RGATCY 3 cut(s) 41, 154, 623
BsuRI GGCC 3 cut(s) 82, 240, 718
BtsIMutI CAGTG 5 cut(s) 213, 360, 537, 705, 877
BveI ACCTGC 2 cut(s) 812, 970
Cac8I GCNNGC 1 cut(s) 565
CaiI CAGNNNCTG 2 cut(s) 83, 848
Cfr10I RCCGGY 1 cut(s) 23
Cfr13I GGNCC 2 cut(s) 80, 752
Csp6I GTAC 3 cut(s) 9, 942, 959
CspAI ACCGGT 1 cut(s) 23
CviAII CATG 3 cut(s) 568, 637, 869
CviQI GTAC 3 cut(s) 9, 942, 959
DdeI CTNAG 3 cut(s) 470, 726, 762
DpnI GATC 6 cut(s) 43, 156, 381, 400, 625, 996
DpnII GATC 6 cut(s) 41, 154, 379, 398, 623, 994
DraI TTTAAA 1 cut(s) 736
Eam1104I CTCTTC 1 cut(s) 217
EarI CTCTTC 1 cut(s) 217
Eco32I GATATC 2 cut(s) 292, 685
Eco47I GGWCC 1 cut(s) 752
Eco57I CTGAAG 1 cut(s) 741
EcoO109I RGGNCCY 1 cut(s) 80
EcoRII CCWGG 1 cut(s) 76
EcoRV GATATC 2 cut(s) 292, 685
FaeI CATG 3 cut(s) 571, 640, 872
FaqI GGGAC 1 cut(s) 644
FatI CATG 3 cut(s) 567, 636, 868
Fnu4HI GCNGC 4 cut(s) 528, 790, 966, 978
Fsp4HI GCNGC 4 cut(s) 528, 790, 966, 978
FspBI CTAG 1 cut(s) 932
GluI GCNGC 4 cut(s) 528, 790, 966, 978
HaeIII GGCC 3 cut(s) 82, 240, 718
HapII CCGG 2 cut(s) 24, 862
Hin1II CATG 3 cut(s) 571, 640, 872
HindIII AAGCTT 2 cut(s) 93, 919
HinfI GANTC 4 cut(s) 267, 323, 845, 972
HpaII CCGG 2 cut(s) 24, 862
HphI GGTGA 2 cut(s) 38, 793
Hpy166II GTNNAC 3 cut(s) 73, 424, 959
Hpy188I TCNGA 2 cut(s) 100, 497
Hpy188III TCNNGA 4 cut(s) 45, 305, 396, 998
Hpy8I GTNNAC 3 cut(s) 73, 424, 959
HpyAV CCTTC 5 cut(s) 134, 177, 737, 765, 779
HpyCH4III ACNGT 2 cut(s) 208, 881
HpyCH4V TGCA 8 cut(s) 126, 149, 188, 527, 807, 851, 884, 947
HpyF10VI GCNNNNNNNGC 2 cut(s) 185, 974
HpyF3I CTNAG 3 cut(s) 470, 726, 762
Hsp92II CATG 3 cut(s) 571, 640, 872
Kzo9I GATC 6 cut(s) 41, 154, 379, 398, 623, 994
LmnI GCTCC 2 cut(s) 176, 196
Lsp1109I GCAGC 3 cut(s) 539, 952, 989
LweI GCATC 1 cut(s) 893
MaeI CTAG 1 cut(s) 932
MaeIII GTNAC 2 cut(s) 358, 431
MalI GATC 6 cut(s) 43, 156, 381, 400, 625, 996
MboI GATC 6 cut(s) 41, 154, 379, 398, 623, 994
MboII GAAGA 5 cut(s) 113, 116, 234, 584, 826
MfeI CAATTG 1 cut(s) 888
MflI RGATCY 3 cut(s) 41, 154, 623
MhlI GDGCHC 1 cut(s) 829
MluCI AATT 8 cut(s) 16, 29, 160, 211, 558, 711, 796, 888
MlyI GAGTC 2 cut(s) 332, 839
MnlI CCTC 9 cut(s) 251, 283, 328, 333, 472, 545, 721, 944, 947
MseI TTAA 4 cut(s) 159, 228, 735, 839
MspI CCGG 2 cut(s) 24, 862
MspR9I CCNGG 2 cut(s) 78, 863
MunI CAATTG 1 cut(s) 888
MvaI CCWGG 1 cut(s) 78
MwoI GCNNNNNNNGC 2 cut(s) 185, 974
NciI CCSGG 1 cut(s) 863
NdeII GATC 6 cut(s) 41, 154, 379, 398, 623, 994
NlaIII CATG 3 cut(s) 571, 640, 872
NlaIV GGNNCC 3 cut(s) 198, 303, 609
NmuCI GTSAC 2 cut(s) 358, 431
PaqCI CACCTGC 1 cut(s) 812
PasI CCCWGGG 1 cut(s) 77
PfeI GAWTC 2 cut(s) 267, 972
PinAI ACCGGT 1 cut(s) 23
PkrI GCNGC 4 cut(s) 529, 791, 967, 979
PleI GAGTC 2 cut(s) 331, 839
PpsI GAGTC 2 cut(s) 331, 839
PsiI TTATAA 1 cut(s) 504
Psp6I CCWGG 1 cut(s) 76
PspGI CCWGG 1 cut(s) 76
PspN4I GGNNCC 3 cut(s) 198, 303, 609
PspPI GGNCC 2 cut(s) 80, 752
PstNI CAGNNNCTG 2 cut(s) 83, 848
PsuI RGATCY 3 cut(s) 41, 154, 623
RsaI GTAC 3 cut(s) 10, 943, 960
RsaNI GTAC 3 cut(s) 9, 942, 959
SaqAI TTAA 4 cut(s) 159, 228, 735, 839
SatI GCNGC 4 cut(s) 528, 790, 966, 978
Sau3AI GATC 6 cut(s) 41, 154, 379, 398, 623, 994
Sau96I GGNCC 2 cut(s) 80, 752
SchI GAGTC 2 cut(s) 332, 839
ScrFI CCNGG 2 cut(s) 78, 863
SduI GDGCHC 1 cut(s) 829
SfaNI GCATC 1 cut(s) 893
SfcI CTRYAG 1 cut(s) 60
SinI GGWCC 1 cut(s) 752
SmlI CTYRAG 1 cut(s) 387
SmoI CTYRAG 1 cut(s) 387
Sse9I AATT 8 cut(s) 16, 29, 160, 211, 558, 711, 796, 888
SsiI CCGC 2 cut(s) 369, 789
SspMI CTAG 1 cut(s) 932
StyD4I CCNGG 2 cut(s) 76, 861
TaaI ACNGT 2 cut(s) 208, 881
TaqI TCGA 5 cut(s) 275, 321, 645, 661, 829
TaqII GACCGA 1 cut(s) 740
TasI AATT 8 cut(s) 16, 29, 160, 211, 558, 711, 796, 888
TauI GCSGC 1 cut(s) 792
TfiI GAWTC 2 cut(s) 267, 972
Tru1I TTAA 4 cut(s) 159, 228, 735, 839
Tru9I TTAA 4 cut(s) 159, 228, 735, 839
TscAI CASTG 5 cut(s) 213, 367, 544, 712, 884
TseFI GTSAC 2 cut(s) 358, 431
TseI GCWGC 3 cut(s) 527, 965, 977
Tsp45I GTSAC 2 cut(s) 358, 431
TspDTI ATGAA 5 cut(s) 17, 105, 206, 625, 756
TspGWI ACGGA 1 cut(s) 942
TspRI CASTG 5 cut(s) 213, 367, 544, 712, 884
VpaK11BI GGWCC 1 cut(s) 752
XapI RAATTY 4 cut(s) 29, 211, 711, 796
XspI CTAG 1 cut(s) 932
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.