RchiOBHm_Chr1g0323351

Subtilisin-like serine endopeptidase family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000257
Physical Location & Seq
Reverse (-)
10856144 .. 10856570
427 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55326

Sequence Viewer

Length: 354 bp
ATGATAGAAGTAGTCTCTGTATTTCCAAGCACAACTTTCCAACTTCAAACGACAAGATCTTGGGACTTTCTCTGTTTCAATGAGAAAATCCAACGAAATGACAGCGTTGAGAGTGATATCATTATTGGTGTCATTGACTCTGGAATTTGGCCTGATTCGGAGAGCTTCAAAGACAATGGTTTTGGTCCTCCTCCCAAGAAGTGGAAAGGTGCTTGTTCTGCAAGGGATGAAACTGGCCATGGAACACACACTGCCTCATCAGCAGCCGGGAATGCTGTAAAGGATGTCAGCTTTTATGGTATAGCCCAAGGCATTGCAAGAGGGGAAGTTCCCTCAGCGAGAGTTGCTGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 PA Peptidase_S8

Protein Analysis

117

Amino Acids

12.56

Weight (kDa)

5.25

Isoelectric Point (pI)

36.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S8 PF00082 38 - 104 3.4e-07 Subtilase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000257)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46840 AT3G46850 AT5G58820 AT5G58830 AT5G58840 AT5G58840 AT5G58840 AT5G59090 AT5G59090 AT5G59090 AT5G59100 AT5G59120 AT5G59130 AT5G59130 AT5G59130 AT5G59130 AT5G59190
fragaria_vesca FvH4_3g37170 FvH4_7g02830 FvH4_7g02840
malus_domestica MD02G1288900.v1.1 MD02G1289100.v1.1 MD02G1289300.v1.1 MD02G1289400.v1.1 MD02G1289500.v1.1 MD03G1083800.v1.1 MD03G1084000.v1.1 MD07G1037500.v1.1 MD07G1037600.v1.1 MD07G1037700.v1.1 MD07G1039300.v1.1 MD11G1091900.v1.1 MD11G1092000.v1.1
prunus_persica Prupe.2G032800_v2.0.a1 Prupe.2G033000_v2.0.a1 Prupe.2G033100_v2.0.a1 Prupe.2G035100_v2.0.a1 Prupe.6G067600_v2.0.a1 Prupe.6G067600_v2.0.a1 Prupe.6G067700_v2.0.a1 Prupe.6G067800_v2.0.a1
pyrus_communis pycom02g24440 pycom02g24470 pycom02g24480 pycom02g24500 pycom02g24510 pycom03g06650 pycom07g02730 pycom11g07710 pycom11g07720
rosa_chinensis RchiOBHm_Chr1g0323281 RchiOBHm_Chr1g0323291 RchiOBHm_Chr1g0323311 RchiOBHm_Chr1g0323341 RchiOBHm_Chr1g0323351 RchiOBHm_Chr1g0323371 RchiOBHm_Chr1g0323431 RchiOBHm_Chr1g0323461 RchiOBHm_Chr1g0324031 RchiOBHm_Chr5g0066891 RchiOBHm_Chr5g0066901
rosa_laevigata RLG00000030004 RLG00000030235 RLG00000030328 RLG00000030329 RLG00000030334 RLG00000030336 RLG00000030337 RLG00000030338 RLG00000030339 RLG00000030340 RLG00000035885 RLG00000035886 RLG00000035888 RLG00000035890
rosa_multiflora Rmu_co8481685.1_g000001 Rmu_co8485349.1_g000001 Rmu_sc0000605.1_g000061 Rmu_sc0000804.1_g000004 Rmu_sc0000804.1_g000008 Rmu_sc0002263.1_g000074 Rmu_sc0002263.1_g000076 Rmu_sc0002263.1_g000077 Rmu_sc0003418.1_g000005 Rmu_sc0003418.1_g000007 Rmu_sc0003418.1_g000008 Rmu_sc0008378.1_g000013 Rmu_sc0010151.1_g000012
rosa_roxburghii Rroxscaffold_1G00014220 Rroxscaffold_1G00014230 Rroxscaffold_4G00325970 Rroxscaffold_4G00326160 Rroxscaffold_4G00326570 Rroxscaffold_4G00326580 Rroxscaffold_4G00326650 Rroxscaffold_4G00326670 Rroxscaffold_4G00326680 Rroxscaffold_4G00326700
rosa_rugosa Rorug01G0037300 Rorug01G0037400 Rorug01G0037600 Rorug01G0037700 Rorug01G0037800 Rorug01G0037800 Rorug01G0042100 Rorug01G0065000 Rorug05G0379300 Rorug05G0379400
rosa_samantha Rh1AG054700 Rh1AG054900 Rh1AG055000 Rh1AG055200 Rh1AG055300 Rh1BG047500 Rh1CG055800 Rh1CG056000 Rh1CG061400 Rh1DG059900 Rh1DG060200 Rh5AG439100 Rh5AG439200 Rh5BG455900 Rh5CG478000 Rh5CG478300
rosa_wichuraiana Rw1G004750 Rw1G004760 Rw1G004770 Rw1G004790 Rw1G005080 Rw1G006510 Rw5G041060 Rw5G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 201
AcoI YGGCCR 1 cut(s) 235
AcsI RAATTY 1 cut(s) 144
AfiI CCNNNNNNNGG 1 cut(s) 201
AgsI TTSAA 3 cut(s) 47, 79, 169
AluBI AGCT 2 cut(s) 165, 291
AluI AGCT 2 cut(s) 165, 291
Alw26I GTCTC 1 cut(s) 19
AoxI GGCC 2 cut(s) 149, 235
ApeKI GCWGC 2 cut(s) 263, 347
ApoI RAATTY 1 cut(s) 144
ArsI GACNNNNNNTTYG 2 cut(s) 164, 196
AspS9I GGNCC 1 cut(s) 185
AsuC2I CCSGG 1 cut(s) 268
AvaII GGWCC 1 cut(s) 185
BalI TGGCCA 1 cut(s) 237
BbvCI CCTCAGC 1 cut(s) 334
BbvI GCAGC 2 cut(s) 275, 334
BcnI CCSGG 1 cut(s) 268
BcoDI GTCTC 1 cut(s) 19
BglII AGATCT 1 cut(s) 56
BisI GCNGC 2 cut(s) 264, 348
BlsI GCNGC 2 cut(s) 265, 349
Bme1390I CCNGG 1 cut(s) 268
Bme18I GGWCC 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 185
BmrFI CCNGG 1 cut(s) 268
Bpu10I CCTNAGC 1 cut(s) 334
BpuMI CCSGG 1 cut(s) 268
BsaJI CCNNGG 2 cut(s) 238, 307
Bsc4I CCNNNNNNNGG 1 cut(s) 201
Bse1I ACTGG 1 cut(s) 238
Bse3DI GCAATG 1 cut(s) 312
BseDI CCNNGG 2 cut(s) 238, 307
BseGI GGATG 2 cut(s) 232, 289
BseLI CCNNNNNNNGG 1 cut(s) 201
BseMI GCAATG 1 cut(s) 312
BseMII CTCAG 1 cut(s) 348
BseNI ACTGG 1 cut(s) 238
BseRI GAGGAG 1 cut(s) 180
BseXI GCAGC 2 cut(s) 275, 334
BshFI GGCC 2 cut(s) 151, 237
BsiSI CCGG 1 cut(s) 267
BslFI GGGAC 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 201
BsmAI GTCTC 1 cut(s) 19
BsmFI GGGAC 1 cut(s) 77
BsmI GAATGC 1 cut(s) 277
BsnI GGCC 2 cut(s) 151, 237
Bsp143I GATC 1 cut(s) 56
Bsp19I CCATGG 1 cut(s) 238
BspANI GGCC 2 cut(s) 151, 237
BspCNI CTCAG 1 cut(s) 347
BsrDI GCAATG 1 cut(s) 312
BsrI ACTGG 1 cut(s) 238
BssECI CCNNGG 2 cut(s) 238, 307
BssMI GATC 1 cut(s) 56
BssT1I CCWWGG 2 cut(s) 238, 307
BstDEI CTNAG 1 cut(s) 334
BstDSI CCRYGG 1 cut(s) 238
BstF5I GGATG 2 cut(s) 232, 289
BstKTI GATC 1 cut(s) 59
BstMAI GTCTC 1 cut(s) 19
BstMBI GATC 1 cut(s) 56
BstMWI GCNNNNNNNGC 4 cut(s) 218, 260, 272, 344
BstSCI CCNGG 1 cut(s) 266
BstV1I GCAGC 2 cut(s) 275, 334
BstX2I RGATCY 1 cut(s) 56
BstYI RGATCY 1 cut(s) 56
BsuRI GGCC 2 cut(s) 151, 237
BtgI CCRYGG 1 cut(s) 238
BtsCI GGATG 2 cut(s) 232, 289
BtsI GCAGTG 1 cut(s) 249
BtsIMutI CAGTG 1 cut(s) 249
Cfr13I GGNCC 1 cut(s) 185
CviAII CATG 1 cut(s) 239
CviJI RGCY 6 cut(s) 151, 165, 237, 266, 291, 305
CviKI_1 RGCY 6 cut(s) 151, 165, 237, 266, 291, 305
DdeI CTNAG 1 cut(s) 334
DpnI GATC 1 cut(s) 58
DpnII GATC 1 cut(s) 56
EaeI YGGCCR 1 cut(s) 235
Eco130I CCWWGG 2 cut(s) 238, 307
Eco32I GATATC 1 cut(s) 118
Eco47I GGWCC 1 cut(s) 185
EcoRV GATATC 1 cut(s) 118
EcoT14I CCWWGG 2 cut(s) 238, 307
ErhI CCWWGG 2 cut(s) 238, 307
FaeI CATG 1 cut(s) 242
FaiI YATR 3 cut(s) 240, 297, 302
FalI AAGNNNNNCTT 2 cut(s) 19, 51
FaqI GGGAC 1 cut(s) 77
FatI CATG 1 cut(s) 238
Fnu4HI GCNGC 2 cut(s) 264, 348
FokI GGATG 2 cut(s) 239, 296
Fsp4HI GCNGC 2 cut(s) 264, 348
GluI GCNGC 2 cut(s) 264, 348
HaeIII GGCC 2 cut(s) 151, 237
HapII CCGG 1 cut(s) 267
Hin1II CATG 1 cut(s) 242
HinfI GANTC 2 cut(s) 137, 155
HpaII CCGG 1 cut(s) 267
Hpy188I TCNGA 1 cut(s) 160
Hpy188III TCNNGA 1 cut(s) 141
HpyCH4V TGCA 2 cut(s) 221, 317
HpyF10VI GCNNNNNNNGC 4 cut(s) 218, 260, 272, 344
HpyF3I CTNAG 1 cut(s) 334
Hsp92II CATG 1 cut(s) 242
Kzo9I GATC 1 cut(s) 56
LpnPI CCDG 4 cut(s) 126, 165, 219, 280
Lsp1109I GCAGC 2 cut(s) 275, 334
MalI GATC 1 cut(s) 58
MboI GATC 1 cut(s) 56
MflI RGATCY 1 cut(s) 56
MlsI TGGCCA 1 cut(s) 237
MluCI AATT 1 cut(s) 144
MluNI TGGCCA 1 cut(s) 237
MlyI GAGTC 1 cut(s) 131
MmeI TCCRAC 2 cut(s) 64, 115
MnlI CCTC 5 cut(s) 198, 201, 265, 314, 343
Mox20I TGGCCA 1 cut(s) 237
MscI TGGCCA 1 cut(s) 237
Msp20I TGGCCA 1 cut(s) 237
MspI CCGG 1 cut(s) 267
MspR9I CCNGG 1 cut(s) 268
Mva1269I GAATGC 1 cut(s) 277
MwoI GCNNNNNNNGC 4 cut(s) 218, 260, 272, 344
NciI CCSGG 1 cut(s) 268
NcoI CCATGG 1 cut(s) 238
NdeII GATC 1 cut(s) 56
NlaIII CATG 1 cut(s) 242
PctI GAATGC 1 cut(s) 277
PfeI GAWTC 1 cut(s) 155
PflMI CCANNNNNTGG 1 cut(s) 201
PkrI GCNGC 2 cut(s) 265, 349
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
PspPI GGNCC 1 cut(s) 185
PsuI RGATCY 1 cut(s) 56
SatI GCNGC 2 cut(s) 264, 348
Sau3AI GATC 1 cut(s) 56
Sau96I GGNCC 1 cut(s) 185
SchI GAGTC 1 cut(s) 131
ScrFI CCNGG 1 cut(s) 268
SetI ASST 3 cut(s) 167, 211, 293
SinI GGWCC 1 cut(s) 185
Sse9I AATT 1 cut(s) 144
StyD4I CCNGG 1 cut(s) 266
StyI CCWWGG 2 cut(s) 238, 307
TasI AATT 1 cut(s) 144
TfiI GAWTC 1 cut(s) 155
TscAI CASTG 1 cut(s) 256
TseI GCWGC 2 cut(s) 263, 347
TspDTI ATGAA 1 cut(s) 243
TspRI CASTG 1 cut(s) 256
Van91I CCANNNNNTGG 1 cut(s) 201
VpaK11BI GGWCC 1 cut(s) 185
XapI RAATTY 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.