RchiOBHm_Chr1g0323341

Subtilisin-like serine endopeptidase family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000257
Physical Location & Seq
Reverse (-)
10855359 .. 10856112
754 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55325

Sequence Viewer

Length: 711 bp
ATGGAAAAGGGGATACTTACATCAAACTCGGCAGGCAATAATGGTCCTAGAGCTAGTACCGTAACAAGTGTAGCACCATGGTTACTTACAGTTGCAGCAAGTACTACAGATCGTAGAATGATTGACAAGGTTGTTCTTGGAAATGGTACAACTGTAGTTGGGGCTTCAGTGAACTCTTTCCAAATGACTGGGACAAGTTTTCCATTAATATATGGAAAAGATGCTACAACTCAATGCCTAGAGTTTGATGCTCGGAAGTTGTGTTATGTGACGAGTCATATGGCCGGAATTGATGGGGTCTATCAATCTGGATCACTTGGTTCAATTTTGAGAGTTGGCTGGGATGACGATTTGCCCATTTTCGCCCTTCCTGCAACAACTTTGAGTGACAAAGAGTATAATATGATCAAGTCTTATTACATGAACTCCACGAAAGATCCACAAGTAAACATACTAAAAAGTGAAGCCGAAAGAGATGCTGCTGCAGACAGCACTATTGTTGCTTCCTTCTCATCACGTGGACCTAATCAAATTTTACCAGAAATTATCAAGCCAGATATAAGTGCCCCAGGGGTAGCTATATTGGCTGCTTATTCACCTATTGCTTCAATCACAGACAACCCTGAAGACAAGAGGCATGTAAATTACAGTATACTTTCCGGAACCTCCATGTCTTGCCCCCACGCCACTGGTGCCACAGCATATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 PA Peptidase_S8

Protein Analysis

236

Amino Acids

25.02

Weight (kDa)

5.33

Isoelectric Point (pI)

33.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S8 PF00082 2 - 236 1.6e-15 Subtilase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000257)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46840 AT3G46850 AT5G58820 AT5G58830 AT5G58840 AT5G58840 AT5G58840 AT5G59090 AT5G59090 AT5G59090 AT5G59100 AT5G59120 AT5G59130 AT5G59130 AT5G59130 AT5G59130 AT5G59190
fragaria_vesca FvH4_3g37170 FvH4_7g02830 FvH4_7g02840
malus_domestica MD02G1288900.v1.1 MD02G1289100.v1.1 MD02G1289300.v1.1 MD02G1289400.v1.1 MD02G1289500.v1.1 MD03G1083800.v1.1 MD03G1084000.v1.1 MD07G1037500.v1.1 MD07G1037600.v1.1 MD07G1037700.v1.1 MD07G1039300.v1.1 MD11G1091900.v1.1 MD11G1092000.v1.1
prunus_persica Prupe.2G032800_v2.0.a1 Prupe.2G033000_v2.0.a1 Prupe.2G033100_v2.0.a1 Prupe.2G035100_v2.0.a1 Prupe.6G067600_v2.0.a1 Prupe.6G067600_v2.0.a1 Prupe.6G067700_v2.0.a1 Prupe.6G067800_v2.0.a1
pyrus_communis pycom02g24440 pycom02g24470 pycom02g24480 pycom02g24500 pycom02g24510 pycom03g06650 pycom07g02730 pycom11g07710 pycom11g07720
rosa_chinensis RchiOBHm_Chr1g0323281 RchiOBHm_Chr1g0323291 RchiOBHm_Chr1g0323311 RchiOBHm_Chr1g0323341 RchiOBHm_Chr1g0323351 RchiOBHm_Chr1g0323371 RchiOBHm_Chr1g0323431 RchiOBHm_Chr1g0323461 RchiOBHm_Chr1g0324031 RchiOBHm_Chr5g0066891 RchiOBHm_Chr5g0066901
rosa_laevigata RLG00000030004 RLG00000030235 RLG00000030328 RLG00000030329 RLG00000030334 RLG00000030336 RLG00000030337 RLG00000030338 RLG00000030339 RLG00000030340 RLG00000035885 RLG00000035886 RLG00000035888 RLG00000035890
rosa_multiflora Rmu_co8481685.1_g000001 Rmu_co8485349.1_g000001 Rmu_sc0000605.1_g000061 Rmu_sc0000804.1_g000004 Rmu_sc0000804.1_g000008 Rmu_sc0002263.1_g000074 Rmu_sc0002263.1_g000076 Rmu_sc0002263.1_g000077 Rmu_sc0003418.1_g000005 Rmu_sc0003418.1_g000007 Rmu_sc0003418.1_g000008 Rmu_sc0008378.1_g000013 Rmu_sc0010151.1_g000012
rosa_roxburghii Rroxscaffold_1G00014220 Rroxscaffold_1G00014230 Rroxscaffold_4G00325970 Rroxscaffold_4G00326160 Rroxscaffold_4G00326570 Rroxscaffold_4G00326580 Rroxscaffold_4G00326650 Rroxscaffold_4G00326670 Rroxscaffold_4G00326680 Rroxscaffold_4G00326700
rosa_rugosa Rorug01G0037300 Rorug01G0037400 Rorug01G0037600 Rorug01G0037700 Rorug01G0037800 Rorug01G0037800 Rorug01G0042100 Rorug01G0065000 Rorug05G0379300 Rorug05G0379400
rosa_samantha Rh1AG054700 Rh1AG054900 Rh1AG055000 Rh1AG055200 Rh1AG055300 Rh1BG047500 Rh1CG055800 Rh1CG056000 Rh1CG061400 Rh1DG059900 Rh1DG060200 Rh5AG439100 Rh5AG439200 Rh5BG455900 Rh5CG478000 Rh5CG478300
rosa_wichuraiana Rw1G004750 Rw1G004760 Rw1G004770 Rw1G004790 Rw1G005080 Rw1G006510 Rw5G041060 Rw5G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 692
AccI GTMKAC 1 cut(s) 652
AccIII TCCGGA 1 cut(s) 659
AclWI GGATC 2 cut(s) 319, 431
AcoI YGGCCR 1 cut(s) 282
AcsI RAATTY 1 cut(s) 531
AcuI CTGAAG 2 cut(s) 150, 645
AcvI CACGTG 1 cut(s) 518
AfaI GTAC 3 cut(s) 58, 103, 148
AgsI TTSAA 2 cut(s) 324, 609
AjnI CCWGG 1 cut(s) 568
AluBI AGCT 2 cut(s) 53, 578
AluI AGCT 2 cut(s) 53, 578
AlwI GGATC 2 cut(s) 319, 431
Aor13HI TCCGGA 1 cut(s) 659
AoxI GGCC 1 cut(s) 282
ApeKI GCWGC 4 cut(s) 95, 479, 482, 587
ApoI RAATTY 1 cut(s) 531
AseI ATTAAT 1 cut(s) 206
Asp700I GAANNNNTTC 1 cut(s) 176
AspS9I GGNCC 2 cut(s) 44, 521
AsuHPI GGTGA 1 cut(s) 588
AvaII GGWCC 2 cut(s) 44, 521
BaeGI GKGCMC 1 cut(s) 568
BaeI ACNNNNGTAYC 2 cut(s) 138, 171
BanI GGYRCC 1 cut(s) 692
BbrPI CACGTG 1 cut(s) 518
BbsI GAAGAC 1 cut(s) 633
BbvI GCAGC 4 cut(s) 107, 466, 469, 574
BccI CCATC 1 cut(s) 287
BcgI CGANNNNNNTGC 2 cut(s) 458, 492
BciT130I CCWGG 1 cut(s) 570
BciVI GTATCC 1 cut(s) 6
BclI TGATCA 1 cut(s) 405
BfaI CTAG 3 cut(s) 48, 54, 239
BfmI CTRYAG 3 cut(s) 105, 153, 483
BfuI GTATCC 1 cut(s) 6
BisI GCNGC 4 cut(s) 96, 480, 483, 588
BlsI GCNGC 4 cut(s) 97, 481, 484, 589
BmcAI AGTACT 1 cut(s) 103
Bme1390I CCNGG 1 cut(s) 570
Bme18I GGWCC 2 cut(s) 44, 521
BmgT120I GGNCC 2 cut(s) 44, 521
BmiI GGNNCC 2 cut(s) 664, 694
BmrFI CCNGG 1 cut(s) 570
BmrI ACTGGG 1 cut(s) 198
BmsI GCATC 3 cut(s) 211, 238, 466
BmuI ACTGGG 1 cut(s) 198
BpiI GAAGAC 1 cut(s) 633
BsaAI YACGTR 1 cut(s) 518
BsaJI CCNNGG 3 cut(s) 77, 568, 569
BsaWI WCCGGW 1 cut(s) 659
BsaXI ACNNNNNCTCC 2 cut(s) 410, 440
Bse1I ACTGG 2 cut(s) 193, 694
BseAI TCCGGA 1 cut(s) 659
BseBI CCWGG 1 cut(s) 570
BseDI CCNNGG 3 cut(s) 77, 568, 569
BseGI GGATG 1 cut(s) 349
BseNI ACTGG 2 cut(s) 193, 694
BseSI GKGCMC 1 cut(s) 568
BseXI GCAGC 4 cut(s) 107, 466, 469, 574
BseYI CCCAGC 1 cut(s) 339
BshFI GGCC 1 cut(s) 284
BshNI GGYRCC 1 cut(s) 692
BsiSI CCGG 2 cut(s) 285, 660
BslFI GGGAC 1 cut(s) 205
BsmFI GGGAC 1 cut(s) 205
BsnI GGCC 1 cut(s) 284
Bsp1286I GDGCHC 1 cut(s) 568
Bsp13I TCCGGA 1 cut(s) 659
Bsp143I GATC 4 cut(s) 109, 311, 405, 436
Bsp19I CCATGG 1 cut(s) 77
BspANI GGCC 1 cut(s) 284
BspEI TCCGGA 1 cut(s) 659
BspLI GGNNCC 2 cut(s) 664, 694
BspMAI CTGCAG 1 cut(s) 487
BspPI GGATC 2 cut(s) 319, 431
BspT107I GGYRCC 1 cut(s) 692
BsrI ACTGG 2 cut(s) 193, 694
BssECI CCNNGG 3 cut(s) 77, 568, 569
BssMI GATC 4 cut(s) 109, 311, 405, 436
BssNAI GTATAC 1 cut(s) 653
BssT1I CCWWGG 1 cut(s) 77
Bst1107I GTATAC 1 cut(s) 653
Bst2UI CCWGG 1 cut(s) 570
Bst4CI ACNGT 4 cut(s) 61, 91, 154, 650
BstBAI YACGTR 1 cut(s) 518
BstC8I GCNNGC 1 cut(s) 34
BstDSI CCRYGG 1 cut(s) 77
BstF5I GGATG 1 cut(s) 349
BstKTI GATC 4 cut(s) 112, 314, 408, 439
BstMBI GATC 4 cut(s) 109, 311, 405, 436
BstMWI GCNNNNNNNGC 3 cut(s) 371, 584, 692
BstNI CCWGG 1 cut(s) 570
BstNSI RCATGY 1 cut(s) 641
BstSCI CCNGG 1 cut(s) 568
BstSFI CTRYAG 3 cut(s) 105, 153, 483
BstSLI GKGCMC 1 cut(s) 568
BstV1I GCAGC 4 cut(s) 107, 466, 469, 574
BstV2I GAAGAC 1 cut(s) 633
BstX2I RGATCY 1 cut(s) 436
BstXI CCANNNNNNTGG 2 cut(s) 188, 689
BstYI RGATCY 1 cut(s) 436
BstZ17I GTATAC 1 cut(s) 653
BsuI GTATCC 1 cut(s) 6
BsuRI GGCC 1 cut(s) 284
BtgI CCRYGG 1 cut(s) 77
BtsCI GGATG 1 cut(s) 349
BtsIMutI CAGTG 2 cut(s) 174, 687
Cac8I GCNNGC 1 cut(s) 34
Cfr13I GGNCC 2 cut(s) 44, 521
Csp6I GTAC 3 cut(s) 57, 102, 147
CviAII CATG 4 cut(s) 78, 421, 638, 670
CviJI RGCY 8 cut(s) 53, 164, 284, 339, 467, 553, 578, 587
CviKI_1 RGCY 8 cut(s) 53, 164, 284, 339, 467, 553, 578, 587
CviQI GTAC 3 cut(s) 57, 102, 147
DpnI GATC 4 cut(s) 111, 313, 407, 438
DpnII GATC 4 cut(s) 109, 311, 405, 436
EaeI YGGCCR 1 cut(s) 282
Eco130I CCWWGG 1 cut(s) 77
Eco47I GGWCC 2 cut(s) 44, 521
Eco57I CTGAAG 2 cut(s) 150, 645
Eco72I CACGTG 1 cut(s) 518
EcoRII CCWGG 1 cut(s) 568
EcoT14I CCWWGG 1 cut(s) 77
ErhI CCWWGG 1 cut(s) 77
FaeI CATG 4 cut(s) 81, 424, 641, 673
FaqI GGGAC 1 cut(s) 205
FatI CATG 4 cut(s) 77, 420, 637, 669
FauNDI CATATG 2 cut(s) 279, 703
FbaI TGATCA 1 cut(s) 405
FblI GTMKAC 1 cut(s) 652
Fnu4HI GCNGC 4 cut(s) 96, 480, 483, 588
FokI GGATG 1 cut(s) 356
Fsp4HI GCNGC 4 cut(s) 96, 480, 483, 588
FspBI CTAG 3 cut(s) 48, 54, 239
GluI GCNGC 4 cut(s) 96, 480, 483, 588
GsaI CCCAGC 1 cut(s) 343
HaeIII GGCC 1 cut(s) 284
HapII CCGG 2 cut(s) 285, 660
Hin1II CATG 4 cut(s) 81, 424, 641, 673
HinfI GANTC 1 cut(s) 274
HpaII CCGG 2 cut(s) 285, 660
HphI GGTGA 1 cut(s) 588
Hpy166II GTNNAC 4 cut(s) 172, 448, 521, 653
Hpy188I TCNGA 1 cut(s) 255
Hpy188III TCNNGA 2 cut(s) 309, 660
Hpy8I GTNNAC 4 cut(s) 172, 448, 521, 653
HpyAV CCTTC 2 cut(s) 377, 517
HpyCH4III ACNGT 4 cut(s) 61, 91, 154, 650
HpyCH4IV ACGT 1 cut(s) 517
HpyCH4V TGCA 3 cut(s) 95, 374, 485
HpyF10VI GCNNNNNNNGC 3 cut(s) 371, 584, 692
HpySE526I ACGT 1 cut(s) 517
Hsp92II CATG 4 cut(s) 81, 424, 641, 673
Kpn2I TCCGGA 1 cut(s) 659
Ksp22I TGATCA 1 cut(s) 405
Kzo9I GATC 4 cut(s) 109, 311, 405, 436
Lsp1109I GCAGC 4 cut(s) 107, 466, 469, 574
LweI GCATC 3 cut(s) 211, 238, 466
MaeI CTAG 3 cut(s) 48, 54, 239
MaeII ACGT 1 cut(s) 517
MaeIII GTNAC 4 cut(s) 61, 81, 268, 386
MalI GATC 4 cut(s) 111, 313, 407, 438
MboI GATC 4 cut(s) 109, 311, 405, 436
MboII GAAGA 1 cut(s) 638
MflI RGATCY 1 cut(s) 436
MhlI GDGCHC 1 cut(s) 568
MluCI AATT 5 cut(s) 288, 324, 531, 543, 643
MlyI GAGTC 1 cut(s) 283
MnlI CCTC 2 cut(s) 627, 676
MroI TCCGGA 1 cut(s) 659
MroXI GAANNNNTTC 1 cut(s) 176
MseI TTAA 2 cut(s) 206, 709
MspI CCGG 2 cut(s) 285, 660
MspR9I CCNGG 1 cut(s) 570
MvaI CCWGG 1 cut(s) 570
MwoI GCNNNNNNNGC 3 cut(s) 371, 584, 692
NcoI CCATGG 1 cut(s) 77
NdeI CATATG 2 cut(s) 279, 703
NdeII GATC 4 cut(s) 109, 311, 405, 436
NlaIII CATG 4 cut(s) 81, 424, 641, 673
NlaIV GGNNCC 2 cut(s) 664, 694
NmeAIII GCCGAG 1 cut(s) 8
NmuCI GTSAC 2 cut(s) 268, 386
NspI RCATGY 1 cut(s) 641
PasI CCCWGGG 1 cut(s) 569
PdmI GAANNNNTTC 1 cut(s) 176
PkrI GCNGC 4 cut(s) 97, 481, 484, 589
PleI GAGTC 1 cut(s) 282
PmaCI CACGTG 1 cut(s) 518
PmlI CACGTG 1 cut(s) 518
PpsI GAGTC 1 cut(s) 282
Ppu21I YACGTR 1 cut(s) 518
PshBI ATTAAT 1 cut(s) 206
Psp6I CCWGG 1 cut(s) 568
PspCI CACGTG 1 cut(s) 518
PspFI CCCAGC 1 cut(s) 339
PspGI CCWGG 1 cut(s) 568
PspN4I GGNNCC 2 cut(s) 664, 694
PspPI GGNCC 2 cut(s) 44, 521
PstI CTGCAG 1 cut(s) 487
PsuI RGATCY 1 cut(s) 436
RsaI GTAC 3 cut(s) 58, 103, 148
RsaNI GTAC 3 cut(s) 57, 102, 147
SaqAI TTAA 2 cut(s) 206, 709
SatI GCNGC 4 cut(s) 96, 480, 483, 588
Sau3AI GATC 4 cut(s) 109, 311, 405, 436
Sau96I GGNCC 2 cut(s) 44, 521
ScaI AGTACT 1 cut(s) 103
SchI GAGTC 1 cut(s) 283
ScrFI CCNGG 1 cut(s) 570
SduI GDGCHC 1 cut(s) 568
SetI ASST 7 cut(s) 55, 132, 520, 526, 580, 601, 668
SfaNI GCATC 3 cut(s) 211, 238, 466
SfcI CTRYAG 3 cut(s) 105, 153, 483
SinI GGWCC 2 cut(s) 44, 521
Sse9I AATT 5 cut(s) 288, 324, 531, 543, 643
SspMI CTAG 3 cut(s) 48, 54, 239
StyD4I CCNGG 1 cut(s) 568
StyI CCWWGG 1 cut(s) 77
TaaI ACNGT 4 cut(s) 61, 91, 154, 650
TaiI ACGT 1 cut(s) 520
TasI AATT 5 cut(s) 288, 324, 531, 543, 643
TatI WGTACW 1 cut(s) 101
Tru1I TTAA 2 cut(s) 206, 709
Tru9I TTAA 2 cut(s) 206, 709
TscAI CASTG 2 cut(s) 174, 694
TseFI GTSAC 2 cut(s) 268, 386
TseI GCWGC 4 cut(s) 95, 479, 482, 587
Tsp45I GTSAC 2 cut(s) 268, 386
TspDTI ATGAA 1 cut(s) 437
TspRI CASTG 2 cut(s) 174, 694
VpaK11BI GGWCC 2 cut(s) 44, 521
VspI ATTAAT 1 cut(s) 206
XapI RAATTY 1 cut(s) 531
XceI RCATGY 1 cut(s) 641
XmiI GTMKAC 1 cut(s) 652
XmnI GAANNNNTTC 1 cut(s) 176
XspI CTAG 3 cut(s) 48, 54, 239
ZrmI AGTACT 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.