RchiOBHm_Chr1g0323311

Subtilisin-like serine endopeptidase family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000257
Physical Location & Seq
Reverse (-)
10853036 .. 10853865
830 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55322

Sequence Viewer

Length: 783 bp
ATGAAGGAAGTAGTGTCTGTTTTTCCAAGCAGAACTTTCCAGCTTCAAAGAACAAGATCTTGGGACTTTATCGGGTTGTATGAGAAAATCCATCAAAATGCAACTGTTGAGAGTGATGTAATTATTGGAGTGTTTGACAGTGGAACTTGGCATGAATCTAATGAAGGTTTTGGTCCTGCCCCCAAGAAATGGAAAGGTGCTTGTGCAGGCAGTAAAAATTTCACTTGTCACAACAAGATCATTGGAGCTCCGTTTTACGAGCCAGCAGATTCTGCAAGAGATGCAAATGGTCATGGAACCCATGTTGCCTCAACAGCAGCAGGGAACACCGTTAAGGATGTTAGCTATTACGGAATAGCACAAGGCACTGCAACAGGAGGCGGTGCTATATTGGCTGCTTTTGATGATGCTATTGCTAATGGAGTTGGCATTATCACAATATCAATAGGACCTGATAAGCTAATCTCATTCAATGACGATCCTCTAGGAATTGGTACTTTTCATACAATGGAGAAAGGGATACTAACCACAAACCATTCAGGAAATGATGGCCCACTTGGTAACACAAAAAGTCTAACACCATGGATGCTTACAGTTGCAGCAAGTAGCACAGACTGTCGGATCATTGACAACGTTGTTCTCGGAAATGGAAGCACGCTAGTTGGGATTTCATTGAACCCTTTCACATTAAATGGAACAAAGTTTCCATTGGTATATGGAAACAGTCACTGCTCTCAGTCCTCAGCTGGGAATTGTTCAGCTAGCTGCCTCGACAGTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Inhibitor_I9 PA Peptidase_S8

Protein Analysis

260

Amino Acids

27.24

Weight (kDa)

5.7

Isoelectric Point (pI)

26.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S8 PF00082 39 - 204 1.3e-08 Subtilase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000257)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46840 AT3G46850 AT5G58820 AT5G58830 AT5G58840 AT5G58840 AT5G58840 AT5G59090 AT5G59090 AT5G59090 AT5G59100 AT5G59120 AT5G59130 AT5G59130 AT5G59130 AT5G59130 AT5G59190
fragaria_vesca FvH4_3g37170 FvH4_7g02830 FvH4_7g02840
malus_domestica MD02G1288900.v1.1 MD02G1289100.v1.1 MD02G1289300.v1.1 MD02G1289400.v1.1 MD02G1289500.v1.1 MD03G1083800.v1.1 MD03G1084000.v1.1 MD07G1037500.v1.1 MD07G1037600.v1.1 MD07G1037700.v1.1 MD07G1039300.v1.1 MD11G1091900.v1.1 MD11G1092000.v1.1
prunus_persica Prupe.2G032800_v2.0.a1 Prupe.2G033000_v2.0.a1 Prupe.2G033100_v2.0.a1 Prupe.2G035100_v2.0.a1 Prupe.6G067600_v2.0.a1 Prupe.6G067600_v2.0.a1 Prupe.6G067700_v2.0.a1 Prupe.6G067800_v2.0.a1
pyrus_communis pycom02g24440 pycom02g24470 pycom02g24480 pycom02g24500 pycom02g24510 pycom03g06650 pycom07g02730 pycom11g07710 pycom11g07720
rosa_chinensis RchiOBHm_Chr1g0323281 RchiOBHm_Chr1g0323291 RchiOBHm_Chr1g0323311 RchiOBHm_Chr1g0323341 RchiOBHm_Chr1g0323351 RchiOBHm_Chr1g0323371 RchiOBHm_Chr1g0323431 RchiOBHm_Chr1g0323461 RchiOBHm_Chr1g0324031 RchiOBHm_Chr5g0066891 RchiOBHm_Chr5g0066901
rosa_laevigata RLG00000030004 RLG00000030235 RLG00000030328 RLG00000030329 RLG00000030334 RLG00000030336 RLG00000030337 RLG00000030338 RLG00000030339 RLG00000030340 RLG00000035885 RLG00000035886 RLG00000035888 RLG00000035890
rosa_multiflora Rmu_co8481685.1_g000001 Rmu_co8485349.1_g000001 Rmu_sc0000605.1_g000061 Rmu_sc0000804.1_g000004 Rmu_sc0000804.1_g000008 Rmu_sc0002263.1_g000074 Rmu_sc0002263.1_g000076 Rmu_sc0002263.1_g000077 Rmu_sc0003418.1_g000005 Rmu_sc0003418.1_g000007 Rmu_sc0003418.1_g000008 Rmu_sc0008378.1_g000013 Rmu_sc0010151.1_g000012
rosa_roxburghii Rroxscaffold_1G00014220 Rroxscaffold_1G00014230 Rroxscaffold_4G00325970 Rroxscaffold_4G00326160 Rroxscaffold_4G00326570 Rroxscaffold_4G00326580 Rroxscaffold_4G00326650 Rroxscaffold_4G00326670 Rroxscaffold_4G00326680 Rroxscaffold_4G00326700
rosa_rugosa Rorug01G0037300 Rorug01G0037400 Rorug01G0037600 Rorug01G0037700 Rorug01G0037800 Rorug01G0037800 Rorug01G0042100 Rorug01G0065000 Rorug05G0379300 Rorug05G0379400
rosa_samantha Rh1AG054700 Rh1AG054900 Rh1AG055000 Rh1AG055200 Rh1AG055300 Rh1BG047500 Rh1CG055800 Rh1CG056000 Rh1CG061400 Rh1DG059900 Rh1DG060200 Rh5AG439100 Rh5AG439200 Rh5BG455900 Rh5CG478000 Rh5CG478300
rosa_wichuraiana Rw1G004750 Rw1G004760 Rw1G004770 Rw1G004790 Rw1G005080 Rw1G006510 Rw5G041060 Rw5G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 189
AciI CCGC 1 cut(s) 381
AclI AACGTT 1 cut(s) 633
AclWI GGATC 2 cut(s) 473, 629
AcsI RAATTY 1 cut(s) 217
AfaI GTAC 1 cut(s) 496
AfiI CCNNNNNNNGG 2 cut(s) 189, 747
AgsI TTSAA 3 cut(s) 47, 472, 676
AjuI GAANNNNNNNTTGG 2 cut(s) 43, 75
AloI GAACNNNNNNTCC 2 cut(s) 688, 720
AluBI AGCT 7 cut(s) 43, 248, 345, 460, 746, 761, 765
AluI AGCT 7 cut(s) 43, 248, 345, 460, 746, 761, 765
Alw21I GWGCWC 1 cut(s) 250
AlwI GGATC 2 cut(s) 473, 629
AlwNI CAGNNNCTG 2 cut(s) 272, 729
AoxI GGCC 1 cut(s) 550
ApeKI GCWGC 4 cut(s) 317, 395, 599, 765
ApoI RAATTY 1 cut(s) 217
Asp700I GAANNNNTTC 1 cut(s) 680
AspS9I GGNCC 3 cut(s) 173, 449, 551
AsuNHI GCTAGC 1 cut(s) 761
AvaII GGWCC 2 cut(s) 173, 449
BanII GRGCYC 1 cut(s) 250
Bbv12I GWGCWC 1 cut(s) 250
BbvCI CCTCAGC 1 cut(s) 742
BbvI GCAGC 4 cut(s) 329, 382, 611, 752
BccI CCATC 2 cut(s) 99, 542
BciVI GTATCC 1 cut(s) 513
BfaI CTAG 3 cut(s) 485, 659, 762
BfuI GTATCC 1 cut(s) 513
BglII AGATCT 1 cut(s) 56
BisI GCNGC 4 cut(s) 318, 396, 600, 766
BlsI GCNGC 4 cut(s) 319, 397, 601, 767
Bme18I GGWCC 2 cut(s) 173, 449
BmgT120I GGNCC 3 cut(s) 173, 449, 551
BmiI GGNNCC 1 cut(s) 298
BmsI GCATC 3 cut(s) 271, 397, 576
BmtI GCTAGC 1 cut(s) 765
Bpu10I CCTNAGC 1 cut(s) 742
BsaJI CCNNGG 1 cut(s) 581
Bsc4I CCNNNNNNNGG 2 cut(s) 189, 747
BseDI CCNNGG 1 cut(s) 581
BseGI GGATG 2 cut(s) 343, 591
BseLI CCNNNNNNNGG 2 cut(s) 189, 747
BseMII CTCAG 2 cut(s) 749, 756
BseXI GCAGC 4 cut(s) 329, 382, 611, 752
BseYI CCCAGC 1 cut(s) 746
BsgI GTGCAG 1 cut(s) 225
BshFI GGCC 1 cut(s) 552
BsiHKAI GWGCWC 1 cut(s) 250
BslFI GGGAC 1 cut(s) 77
BslI CCNNNNNNNGG 2 cut(s) 189, 747
BsmFI GGGAC 1 cut(s) 77
BsnI GGCC 1 cut(s) 552
Bsp1286I GDGCHC 1 cut(s) 250
Bsp143I GATC 4 cut(s) 56, 237, 478, 621
Bsp19I CCATGG 1 cut(s) 581
BspACI CCGC 1 cut(s) 381
BspANI GGCC 1 cut(s) 552
BspCNI CTCAG 2 cut(s) 748, 755
BspLI GGNNCC 1 cut(s) 298
BspOI GCTAGC 1 cut(s) 765
BspPI GGATC 2 cut(s) 473, 629
BssECI CCNNGG 1 cut(s) 581
BssMI GATC 4 cut(s) 56, 237, 478, 621
BssT1I CCWWGG 1 cut(s) 581
Bst4CI ACNGT 7 cut(s) 106, 140, 331, 595, 617, 725, 776
BstAPI GCANNNNNTGC 2 cut(s) 272, 281
BstC8I GCNNGC 4 cut(s) 208, 264, 656, 763
BstDEI CTNAG 2 cut(s) 735, 742
BstDSI CCRYGG 1 cut(s) 581
BstF5I GGATG 2 cut(s) 343, 591
BstKTI GATC 4 cut(s) 59, 240, 481, 624
BstMBI GATC 4 cut(s) 56, 237, 478, 621
BstMWI GCNNNNNNNGC 4 cut(s) 272, 281, 314, 392
BstV1I GCAGC 4 cut(s) 329, 382, 611, 752
BstX2I RGATCY 1 cut(s) 56
BstYI RGATCY 1 cut(s) 56
BsuI GTATCC 1 cut(s) 513
BsuRI GGCC 1 cut(s) 552
BtgI CCRYGG 1 cut(s) 581
BtsCI GGATG 2 cut(s) 343, 591
BtsI GCAGTG 2 cut(s) 366, 727
BtsIMutI CAGTG 4 cut(s) 145, 366, 727, 781
Cac8I GCNNGC 4 cut(s) 208, 264, 656, 763
CaiI CAGNNNCTG 2 cut(s) 272, 729
Cfr13I GGNCC 3 cut(s) 173, 449, 551
Csp6I GTAC 1 cut(s) 495
CviAII CATG 4 cut(s) 152, 293, 302, 582
CviQI GTAC 1 cut(s) 495
DdeI CTNAG 2 cut(s) 735, 742
DpnI GATC 4 cut(s) 58, 239, 480, 623
DpnII GATC 4 cut(s) 56, 237, 478, 621
Ecl136II GAGCTC 1 cut(s) 248
Eco130I CCWWGG 1 cut(s) 581
Eco24I GRGCYC 1 cut(s) 250
Eco47I GGWCC 2 cut(s) 173, 449
Eco53kI GAGCTC 1 cut(s) 248
EcoICRI GAGCTC 1 cut(s) 248
EcoO109I RGGNCCY 1 cut(s) 449
EcoT14I CCWWGG 1 cut(s) 581
EcoT38I GRGCYC 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 581
FaeI CATG 4 cut(s) 155, 296, 305, 585
FaiI YATR 9 cut(s) 81, 153, 294, 303, 389, 504, 583, 715, 717
FalI AAGNNNNNCTT 2 cut(s) 19, 51
FaqI GGGAC 1 cut(s) 77
FatI CATG 4 cut(s) 151, 292, 301, 581
Fnu4HI GCNGC 4 cut(s) 318, 396, 600, 766
FokI GGATG 2 cut(s) 350, 598
FriOI GRGCYC 1 cut(s) 250
Fsp4HI GCNGC 4 cut(s) 318, 396, 600, 766
FspBI CTAG 3 cut(s) 485, 659, 762
GluI GCNGC 4 cut(s) 318, 396, 600, 766
GsaI CCCAGC 1 cut(s) 750
HaeIII GGCC 1 cut(s) 552
Hin1II CATG 4 cut(s) 155, 296, 305, 585
HinfI GANTC 2 cut(s) 155, 269
Hpy188I TCNGA 2 cut(s) 621, 644
Hpy188III TCNNGA 1 cut(s) 540
HpyAV CCTTC 1 cut(s) 158
HpyCH4III ACNGT 7 cut(s) 106, 140, 331, 595, 617, 725, 776
HpyCH4IV ACGT 1 cut(s) 633
HpyCH4V TGCA 6 cut(s) 101, 206, 275, 284, 371, 599
HpyF10VI GCNNNNNNNGC 4 cut(s) 272, 281, 314, 392
HpyF3I CTNAG 2 cut(s) 735, 742
HpySE526I ACGT 1 cut(s) 633
Hsp92II CATG 4 cut(s) 155, 296, 305, 585
Kzo9I GATC 4 cut(s) 56, 237, 478, 621
LmnI GCTCC 2 cut(s) 245, 253
LpnPI CCDG 9 cut(s) 53, 189, 192, 276, 306, 360, 465, 525, 732
Lsp1109I GCAGC 4 cut(s) 329, 382, 611, 752
LweI GCATC 3 cut(s) 271, 397, 576
MaeI CTAG 3 cut(s) 485, 659, 762
MaeII ACGT 1 cut(s) 633
MaeIII GTNAC 3 cut(s) 227, 560, 725
MalI GATC 4 cut(s) 58, 239, 480, 623
MboI GATC 4 cut(s) 56, 237, 478, 621
MflI RGATCY 1 cut(s) 56
MhlI GDGCHC 1 cut(s) 250
MluCI AATT 4 cut(s) 120, 217, 489, 751
MmeI TCCRAC 1 cut(s) 599
MnlI CCTC 5 cut(s) 319, 371, 492, 751, 779
MroXI GAANNNNTTC 1 cut(s) 680
MseI TTAA 3 cut(s) 333, 689, 781
MslI CAYNNNNRTG 1 cut(s) 96
MspA1I CMGCKG 1 cut(s) 746
MwoI GCNNNNNNNGC 4 cut(s) 272, 281, 314, 392
NcoI CCATGG 1 cut(s) 581
NdeII GATC 4 cut(s) 56, 237, 478, 621
NheI GCTAGC 1 cut(s) 761
NlaIII CATG 4 cut(s) 155, 296, 305, 585
NlaIV GGNNCC 1 cut(s) 298
NmuCI GTSAC 2 cut(s) 227, 725
PdmI GAANNNNTTC 1 cut(s) 680
PfeI GAWTC 2 cut(s) 155, 269
PflMI CCANNNNNTGG 1 cut(s) 189
PkrI GCNGC 4 cut(s) 319, 397, 601, 767
PpuMI RGGWCCY 1 cut(s) 449
Psp124BI GAGCTC 1 cut(s) 250
Psp1406I AACGTT 1 cut(s) 633
Psp5II RGGWCCY 1 cut(s) 449
PspFI CCCAGC 1 cut(s) 746
PspN4I GGNNCC 1 cut(s) 298
PspPI GGNCC 3 cut(s) 173, 449, 551
PspPPI RGGWCCY 1 cut(s) 449
PstNI CAGNNNCTG 2 cut(s) 272, 729
PsuI RGATCY 1 cut(s) 56
PvuII CAGCTG 1 cut(s) 746
RsaI GTAC 1 cut(s) 496
RsaNI GTAC 1 cut(s) 495
RseI CAYNNNNRTG 1 cut(s) 96
SacI GAGCTC 1 cut(s) 250
SaqAI TTAA 3 cut(s) 333, 689, 781
SatI GCNGC 4 cut(s) 318, 396, 600, 766
Sau3AI GATC 4 cut(s) 56, 237, 478, 621
Sau96I GGNCC 3 cut(s) 173, 449, 551
SduI GDGCHC 1 cut(s) 250
SfaNI GCATC 3 cut(s) 271, 397, 576
SinI GGWCC 2 cut(s) 173, 449
SmiMI CAYNNNNRTG 1 cut(s) 96
Sse9I AATT 4 cut(s) 120, 217, 489, 751
SsiI CCGC 1 cut(s) 381
SspMI CTAG 3 cut(s) 485, 659, 762
SstI GAGCTC 1 cut(s) 250
StyI CCWWGG 1 cut(s) 581
TaaI ACNGT 7 cut(s) 106, 140, 331, 595, 617, 725, 776
TaiI ACGT 1 cut(s) 636
TaqI TCGA 1 cut(s) 771
TasI AATT 4 cut(s) 120, 217, 489, 751
TfiI GAWTC 2 cut(s) 155, 269
Tru1I TTAA 3 cut(s) 333, 689, 781
Tru9I TTAA 3 cut(s) 333, 689, 781
TscAI CASTG 4 cut(s) 145, 373, 734, 781
TseFI GTSAC 2 cut(s) 227, 725
TseI GCWGC 4 cut(s) 317, 395, 599, 765
Tsp45I GTSAC 2 cut(s) 227, 725
TspDTI ATGAA 5 cut(s) 17, 168, 177, 491, 660
TspGWI ACGGA 2 cut(s) 240, 366
TspRI CASTG 4 cut(s) 145, 373, 734, 781
Van91I CCANNNNNTGG 1 cut(s) 189
VpaK11BI GGWCC 2 cut(s) 173, 449
XapI RAATTY 1 cut(s) 217
XmnI GAANNNNTTC 1 cut(s) 680
XspI CTAG 3 cut(s) 485, 659, 762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.