Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004089

Physical Location & Seq

Genomic Coordinates Reverse (-)

58846175 .. 58852479

Gene Structure 6305 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00326710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGAAGATGGCTGCCCATCAAGAAAATTCTGGCAATGTTTCCGGTCCACAAGAAAGGCTGGAGTTTTTGCTGCATCAATCTGCCAACAAGTCCTGTGCTGATTGTGGATCTCCAGATCCAAAATGGGTTGTTTCAGTGAAGCTAGATGAATGGACAGATGAACAAGTTGATGGCCTGGCAAGTATGGGTGGAAATATTACTGTAAACAAGAAGTATGAAGCTTGCATGCCACAAAATGTTCGAAAACCAAAACCAGATTCTTCTATAGAGGAGCGTTTTTATTTTATTAGGAGAAAATATGAGCTGCAAGACTTTTTAAACACAGCTGATCAGATTCAGATGTCCTGCCCTTTCCCGCCTTCTCATAAGAGACATTCTTCTACCAATTCTTCAAGCATTACTTATAGCCAAGACAAGAAACAATGTGAGAAGCAAAATACCAAAAATCGTATCGGGCAGGCATTTCGTAACAGCTGGGGAAGAAAAGACTCTGAACACAAGTCCGCAAAGAAGGGCAGCTCAATGTCCATGTCAGTGAAGACACGTGTAATAAAGAACAACCTGAATCCAGTGTGGAATGAAAGTCTGATGCTGTCGATTCCTGAACAGATTCCTCCTCTAAAAGTAAAAACAAATCCAGTGGAATTGTGTCATGATTCATGTACAGTGAATATCTTGATCCGTCCTTTCATTGAGCACTGCTTGATGTCAAAAGGAAGTTTAAGTTTCAAGAATCATAGTTTCTTTTCTGGGACTGTTGTAAAATTGAATTGCCACACTGCTGGGAATTTCTTCCCCTTTCATAGGGAAGAAATTCTGGTGTATGACAAGGATACTTTCACAACTGATGATTATATGGGTGAGGCTGAGATTGACATTCAGCCTCTGGTCACCGCTGCTGTAGCCTTTGAGAAGTCTTCGCTCAATGAGTCAATGCAGCTGGGAAAGTGGGTAGCCAGCAAAGATAACACCCTAGTAAAAGATGGTGTCATCAACCTAATAGATGGGAAAGTAAGACAGCACATCGCTCTTAGGCTGCAGAATGTTGAGAGAGGTGTATTAGAGATTGAGTTGGAATGTGTTCCTCTTACTCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ArfGap C2

Protein Analysis

365

Amino Acids

41.29

Weight (kDa)

7.98

Isoelectric Point (pI)

59.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArfGap	PF01412	43 - 107	4.3e-07	Putative GTPase activating protein for Arf
C2	PF00168	178 - 208	9.2e-06	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07940 AT3G07940
fragaria_vesca	FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820
malus_domestica	MD02G1289600.v1.1 MD07G1037300.v1.1
prunus_persica	Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1
pyrus_communis	pycom02g24520 pycom07g02610
rosa_chinensis	RchiOBHm_Chr1g0323271
rosa_laevigata	RLG00000030341
rosa_multiflora	Rmu_sc0002263.1_g000073 Rmu_sc0003418.1_g000004
rosa_roxburghii	Rroxscaffold_4G00326710
rosa_rugosa	Rorug01G0037200 Rorug01G0037300
rosa_samantha	Rh1AG054500 Rh1BG047400 Rh1CG055700 Rh1DG059600
rosa_wichuraiana	Rw1G004740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	356, 504, 894
AclWI	GGATC	3 cut(s)	110, 115, 673
AcsI	RAATTY	3 cut(s)	25, 787, 813
AcvI	CACGTG	1 cut(s)	545
AfaI	GTAC	1 cut(s)	664
AfiI	CCNNNNNNNGG	1 cut(s)	804
AflIII	ACRYGT	2 cut(s)	542, 544
AgsI	TTSAA	3 cut(s)	393, 730, 769
AjnI	CCWGG	1 cut(s)	174
AjuI	GAANNNNNNNTTGG	2 cut(s)	241, 273
AluBI	AGCT	7 cut(s)	142, 221, 304, 326, 474, 519, 940
AluI	AGCT	7 cut(s)	142, 221, 304, 326, 474, 519, 940
Alw21I	GWGCWC	1 cut(s)	699
Alw26I	GTCTC	1 cut(s)	364
AlwI	GGATC	3 cut(s)	110, 115, 673
AlwNI	CAGNNNCTG	1 cut(s)	886
AoxI	GGCC	1 cut(s)	172
ApeKI	GCWGC	7 cut(s)	11, 70, 304, 516, 896, 937, 1036
ApoI	RAATTY	3 cut(s)	25, 787, 813
Asp700I	GAANNNNTTC	4 cut(s)	609, 791, 813, 1080
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	2 cut(s)	872, 883
AsuII	TTCGAA	1 cut(s)	241
AvaII	GGWCC	1 cut(s)	44
BbrPI	CACGTG	1 cut(s)	545
BbsI	GAAGAC	2 cut(s)	545, 909
Bbv12I	GWGCWC	1 cut(s)	699
BbvI	GCAGC	6 cut(s)	57, 291, 528, 883, 949, 1023
BccI	CCATC	4 cut(s)	24, 164, 977, 998
BcgI	CGANNNNNNTGC	2 cut(s)	446, 480
BciT130I	CCWGG	1 cut(s)	176
BciVI	GTATCC	1 cut(s)	826
BclI	TGATCA	1 cut(s)	328
BcoDI	GTCTC	1 cut(s)	364
BfaI	CTAG	2 cut(s)	143, 974
BfmI	CTRYAG	3 cut(s)	264, 900, 1037
BfuI	GTATCC	1 cut(s)	826
BisI	GCNGC	7 cut(s)	12, 71, 305, 517, 897, 938, 1037
BlsI	GCNGC	7 cut(s)	13, 72, 306, 518, 898, 939, 1038
Bme1390I	CCNGG	1 cut(s)	176
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	44
BmrFI	CCNGG	1 cut(s)	176
BmsI	GCATC	2 cut(s)	82, 579
BpiI	GAAGAC	2 cut(s)	545, 909
BpmI	CTGGAG	2 cut(s)	80, 96
Bpu14I	TTCGAA	1 cut(s)	241
BsaAI	YACGTR	1 cut(s)	545
BsaWI	WCCGGW	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	1 cut(s)	804
Bse1I	ACTGG	2 cut(s)	569, 638
Bse3DI	GCAATG	1 cut(s)	40
BseBI	CCWGG	1 cut(s)	176
BseLI	CCNNNNNNNGG	1 cut(s)	804
BseMI	GCAATG	1 cut(s)	40
BseMII	CTCAG	1 cut(s)	858
BseNI	ACTGG	2 cut(s)	569, 638
BseRI	GAGGAG	2 cut(s)	284, 606
BseXI	GCAGC	6 cut(s)	57, 291, 528, 883, 949, 1023
BseYI	CCCAGC	3 cut(s)	474, 782, 940
BshFI	GGCC	1 cut(s)	174
BsiHKAI	GWGCWC	1 cut(s)	699
BsiSI	CCGG	1 cut(s)	42
BslFI	GGGAC	1 cut(s)	766
BslI	CCNNNNNNNGG	1 cut(s)	804
BsmAI	GTCTC	1 cut(s)	364
BsmFI	GGGAC	1 cut(s)	766
BsnI	GGCC	1 cut(s)	174
Bsp119I	TTCGAA	1 cut(s)	241
Bsp1286I	GDGCHC	1 cut(s)	699
Bsp1407I	TGTACA	1 cut(s)	662
Bsp143I	GATC	4 cut(s)	107, 115, 328, 678
BspACI	CCGC	3 cut(s)	356, 504, 894
BspANI	GGCC	1 cut(s)	174
BspCNI	CTCAG	1 cut(s)	859
BspHI	TCATGA	1 cut(s)	652
BspMAI	CTGCAG	1 cut(s)	1041
BspPI	GGATC	3 cut(s)	110, 115, 673
BspT104I	TTCGAA	1 cut(s)	241
BsrDI	GCAATG	1 cut(s)	40
BsrGI	TGTACA	1 cut(s)	662
BsrI	ACTGG	2 cut(s)	569, 638
BssMI	GATC	4 cut(s)	107, 115, 328, 678
Bst2UI	CCWGG	1 cut(s)	176
Bst4CI	ACNGT	3 cut(s)	202, 667, 757
BstAUI	TGTACA	1 cut(s)	662
BstBAI	YACGTR	1 cut(s)	545
BstBI	TTCGAA	1 cut(s)	241
BstC8I	GCNNGC	4 cut(s)	223, 227, 459, 958
BstDEI	CTNAG	2 cut(s)	867, 1031
BstEII	GGTNACC	1 cut(s)	889
BstENI	CCTNNNNNAGG	1 cut(s)	802
BstKTI	GATC	4 cut(s)	110, 118, 331, 681
BstMAI	GTCTC	1 cut(s)	364
BstMBI	GATC	4 cut(s)	107, 115, 328, 678
BstMWI	GCNNNNNNNGC	1 cut(s)	902
BstNI	CCWGG	1 cut(s)	176
BstNSI	RCATGY	1 cut(s)	229
BstPI	GGTNACC	1 cut(s)	889
BstSCI	CCNGG	1 cut(s)	174
BstSFI	CTRYAG	3 cut(s)	264, 900, 1037
BstV1I	GCAGC	6 cut(s)	57, 291, 528, 883, 949, 1023
BstV2I	GAAGAC	2 cut(s)	545, 909
BstX2I	RGATCY	2 cut(s)	107, 115
BstXI	CCANNNNNNTGG	1 cut(s)	782
BstYI	RGATCY	2 cut(s)	107, 115
BsuI	GTATCC	1 cut(s)	826
BsuRI	GGCC	1 cut(s)	174
BtgZI	GCGATG	1 cut(s)	1009
BtsI	GCAGTG	2 cut(s)	697, 777
BtsIMutI	CAGTG	7 cut(s)	141, 540, 576, 645, 672, 697, 777
Cac8I	GCNNGC	4 cut(s)	223, 227, 459, 958
CaiI	CAGNNNCTG	1 cut(s)	886
CciI	TCATGA	1 cut(s)	652
Cfr13I	GGNCC	1 cut(s)	44
Csp6I	GTAC	1 cut(s)	663
CspCI	CAANNNNNGTGG	2 cut(s)	621, 656
CviAII	CATG	4 cut(s)	226, 529, 653, 660
CviQI	GTAC	1 cut(s)	663
DdeI	CTNAG	2 cut(s)	867, 1031
DpnI	GATC	4 cut(s)	109, 117, 330, 680
DpnII	GATC	4 cut(s)	107, 115, 328, 678
DraI	TTTAAA	1 cut(s)	318
Eco47I	GGWCC	1 cut(s)	44
Eco72I	CACGTG	1 cut(s)	545
Eco91I	GGTNACC	1 cut(s)	889
EcoNI	CCTNNNNNAGG	1 cut(s)	802
EcoO65I	GGTNACC	1 cut(s)	889
EcoRII	CCWGG	1 cut(s)	174
FaeI	CATG	4 cut(s)	229, 532, 656, 663
FalI	AAGNNNNNCTT	2 cut(s)	385, 417
FaqI	GGGAC	1 cut(s)	766
FatI	CATG	4 cut(s)	225, 528, 652, 659
FauI	CCCGC	1 cut(s)	363
FbaI	TGATCA	1 cut(s)	328
Fnu4HI	GCNGC	7 cut(s)	12, 71, 305, 517, 897, 938, 1037
Fsp4HI	GCNGC	7 cut(s)	12, 71, 305, 517, 897, 938, 1037
FspBI	CTAG	2 cut(s)	143, 974
GluI	GCNGC	7 cut(s)	12, 71, 305, 517, 897, 938, 1037
GsaI	CCCAGC	3 cut(s)	478, 786, 944
GsuI	CTGGAG	2 cut(s)	80, 96
HaeIII	GGCC	1 cut(s)	174
HapII	CCGG	1 cut(s)	42
Hin1II	CATG	4 cut(s)	229, 532, 656, 663
HindIII	AAGCTT	1 cut(s)	219
HinfI	GANTC	9 cut(s)	257, 334, 488, 565, 598, 610, 656, 733, 929
HpaII	CCGG	1 cut(s)	42
HphI	GGTGA	2 cut(s)	872, 883
Hpy166II	GTNNAC	2 cut(s)	47, 205
Hpy188I	TCNGA	4 cut(s)	333, 339, 493, 588
Hpy188III	TCNNGA	6 cut(s)	20, 113, 602, 653, 676, 730
Hpy8I	GTNNAC	2 cut(s)	47, 205
HpyAV	CCTTC	2 cut(s)	369, 505
HpyCH4III	ACNGT	3 cut(s)	202, 667, 757
HpyCH4IV	ACGT	1 cut(s)	544
HpyCH4V	TGCA	5 cut(s)	73, 225, 307, 937, 1039
HpyF10VI	GCNNNNNNNGC	1 cut(s)	902
HpyF3I	CTNAG	2 cut(s)	867, 1031
HpySE526I	ACGT	1 cut(s)	544
Hsp92II	CATG	4 cut(s)	229, 532, 656, 663
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	4 cut(s)	107, 115, 328, 678
LmnI	GCTCC	1 cut(s)	271
Lsp1109I	GCAGC	6 cut(s)	57, 291, 528, 883, 949, 1023
LweI	GCATC	2 cut(s)	82, 579
MaeI	CTAG	2 cut(s)	143, 974
MaeII	ACGT	1 cut(s)	544
MaeIII	GTNAC	2 cut(s)	467, 889
MalI	GATC	4 cut(s)	109, 117, 330, 680
MboI	GATC	4 cut(s)	107, 115, 328, 678
MboII	GAAGA	9 cut(s)	16, 252, 369, 381, 492, 550, 784, 821, 909
MflI	RGATCY	2 cut(s)	107, 115
MhlI	GDGCHC	1 cut(s)	699
MluCI	AATT	7 cut(s)	25, 385, 644, 764, 769, 787, 813
MlyI	GAGTC	2 cut(s)	482, 938
MmeI	TCCRAC	1 cut(s)	1053
MnlI	CCTC	7 cut(s)	262, 624, 627, 856, 894, 1046, 1095
MroXI	GAANNNNTTC	4 cut(s)	609, 791, 813, 1080
MseI	TTAA	2 cut(s)	317, 722
MslI	CAYNNNNRTG	1 cut(s)	533
MspA1I	CMGCKG	4 cut(s)	326, 474, 896, 940
MspI	CCGG	1 cut(s)	42
MspR9I	CCNGG	1 cut(s)	176
MvaI	CCWGG	1 cut(s)	176
MwoI	GCNNNNNNNGC	1 cut(s)	902
NdeII	GATC	4 cut(s)	107, 115, 328, 678
NlaIII	CATG	4 cut(s)	229, 532, 656, 663
NmuCI	GTSAC	1 cut(s)	889
NspI	RCATGY	1 cut(s)	229
NspV	TTCGAA	1 cut(s)	241
PaeI	GCATGC	1 cut(s)	229
PagI	TCATGA	1 cut(s)	652
PdmI	GAANNNNTTC	4 cut(s)	609, 791, 813, 1080
PfeI	GAWTC	7 cut(s)	257, 334, 565, 598, 610, 656, 733
PkrI	GCNGC	7 cut(s)	13, 72, 306, 518, 898, 939, 1038
PleI	GAGTC	2 cut(s)	482, 937
PmaCI	CACGTG	1 cut(s)	545
PmlI	CACGTG	1 cut(s)	545
PpsI	GAGTC	2 cut(s)	482, 937
Ppu21I	YACGTR	1 cut(s)	545
Psp6I	CCWGG	1 cut(s)	174
PspCI	CACGTG	1 cut(s)	545
PspEI	GGTNACC	1 cut(s)	889
PspFI	CCCAGC	3 cut(s)	474, 782, 940
PspGI	CCWGG	1 cut(s)	174
PspPI	GGNCC	1 cut(s)	44
PstI	CTGCAG	1 cut(s)	1041
PstNI	CAGNNNCTG	1 cut(s)	886
PsuI	RGATCY	2 cut(s)	107, 115
PvuII	CAGCTG	3 cut(s)	326, 474, 940
RsaI	GTAC	1 cut(s)	664
RsaNI	GTAC	1 cut(s)	663
RseI	CAYNNNNRTG	1 cut(s)	533
SaqAI	TTAA	2 cut(s)	317, 722
SatI	GCNGC	7 cut(s)	12, 71, 305, 517, 897, 938, 1037
Sau3AI	GATC	4 cut(s)	107, 115, 328, 678
Sau96I	GGNCC	1 cut(s)	44
SchI	GAGTC	2 cut(s)	482, 938
ScrFI	CCNGG	1 cut(s)	176
SduI	GDGCHC	1 cut(s)	699
SfaNI	GCATC	2 cut(s)	82, 579
SfcI	CTRYAG	3 cut(s)	264, 900, 1037
SfuI	TTCGAA	1 cut(s)	241
SinI	GGWCC	1 cut(s)	44
SmiMI	CAYNNNNRTG	1 cut(s)	533
SphI	GCATGC	1 cut(s)	229
Sse9I	AATT	7 cut(s)	25, 385, 644, 764, 769, 787, 813
SsiI	CCGC	3 cut(s)	356, 504, 894
SspI	AATATT	1 cut(s)	196
SspMI	CTAG	2 cut(s)	143, 974
StyD4I	CCNGG	1 cut(s)	174
TaaI	ACNGT	3 cut(s)	202, 667, 757
TaiI	ACGT	1 cut(s)	547
TaqI	TCGA	2 cut(s)	241, 596
TasI	AATT	7 cut(s)	25, 385, 644, 764, 769, 787, 813
TatI	WGTACW	1 cut(s)	662
TfiI	GAWTC	7 cut(s)	257, 334, 565, 598, 610, 656, 733
Tru1I	TTAA	2 cut(s)	317, 722
Tru9I	TTAA	2 cut(s)	317, 722
TscAI	CASTG	7 cut(s)	141, 540, 576, 645, 672, 704, 784
TseFI	GTSAC	1 cut(s)	889
TseI	GCWGC	7 cut(s)	11, 70, 304, 516, 896, 937, 1036
Tsp45I	GTSAC	1 cut(s)	889
TspDTI	ATGAA	8 cut(s)	17, 162, 174, 231, 594, 648, 679, 791
TspGWI	ACGGA	1 cut(s)	671
TspRI	CASTG	7 cut(s)	141, 540, 576, 645, 672, 704, 784
VpaK11BI	GGWCC	1 cut(s)	44
XagI	CCTNNNNNAGG	1 cut(s)	802
XapI	RAATTY	3 cut(s)	25, 787, 813
XceI	RCATGY	1 cut(s)	229
XcmI	CCANNNNNNNNNTGG	1 cut(s)	120
XmnI	GAANNNNTTC	4 cut(s)	609, 791, 813, 1080
XspI	CTAG	2 cut(s)	143, 974

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.