Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0004089

Physical Location & Seq

Genomic Coordinates Reverse (-)

22664044 .. 22666107

Gene Structure 2064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g24520.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGGAGGAAATACTACTGTAAACAAGAAGTATGAGGCTCACTTGCCGGAAAATGTCAGCAAACCAAAACCAGATTCTTCTATAGAGGAGCGCTTTTATTTTATTAGGAGAAAATATGAGCTGCTAGACTTCTTGAACTCTGATGAACAGATGTCATGTCCTTTCCCACCTAATAAGAAATCAAGCAATTCAACTGTTAGTTCTACCCAAGATAAGAAACAGTATGAGAAACAACCAACGAAACACCGTATTGGTCAGGCATTTCGTAACAGCTGGGGAAGAAAAGACTCTGAACATAAGACCGCAAAGAAGGGCTACTCAATGCCGATGGCAGGTATGGTCGAATTTGTTGGACTAATTAAGGTGAATGTGGTTAAAGGAACCAACCTAGTTGTACGGGATATGGTGACAAGTGACCCTTACGTCATCCTTGCATTGGGTCACCAATCGGTGAAGACGCGTGTCATAAAGAACAACCTTAATCCAGTATGGAATGAGAGCCTGATGCTGTCAATTCCTGATCACATACCTCCTCTAAAAGTGCTGGTATATGACAAAGATACGTTCAAAGCTGATGATTTTATGGGTGAGGCTGAGATTGACATTCAACCTTTGGTGAGTGCTGCCATAGCCTATGAGAAGTCCTCAATCAATGAGCCGATGCAGCTTGGAAAGTGGGTAGCCAGCAAAGAAAATACACTCGTAAAAGATGGTGTCATCAACCTAGTAGACGGGAGAGTGAGACAGCAGATCACTCTCAGGCTGCAGAATGTTGAGAGGGGTATACTGGATCGATCGAGCTTGAATGTGTGCCTCTTAATCAATAGCCCGCATTGGCCTAGAAAGTTAGAAGGAAATGAAATTACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ArfGap C2

Protein Analysis

290

Amino Acids

32.77

Weight (kDa)

9.2

Isoelectric Point (pI)

38.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07940 AT3G07940
fragaria_vesca	FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820
malus_domestica	MD02G1289600.v1.1 MD07G1037300.v1.1
prunus_persica	Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1
pyrus_communis	pycom02g24520 pycom07g02610
rosa_chinensis	RchiOBHm_Chr1g0323271
rosa_laevigata	RLG00000030341
rosa_multiflora	Rmu_sc0002263.1_g000073 Rmu_sc0003418.1_g000004
rosa_roxburghii	Rroxscaffold_4G00326710
rosa_rugosa	Rorug01G0037200 Rorug01G0037300
rosa_samantha	Rh1AG054500 Rh1BG047400 Rh1CG055700 Rh1DG059600
rosa_wichuraiana	Rw1G004740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	422
Acc36I	ACCTGC	1 cut(s)	323
AccI	GTMKAC	2 cut(s)	729, 784
AccII	CGCG	1 cut(s)	460
AciI	CCGC	2 cut(s)	303, 830
AclWI	GGATC	1 cut(s)	798
AcsI	RAATTY	1 cut(s)	344
AfaI	GTAC	1 cut(s)	396
AfeI	AGCGCT	1 cut(s)	92
AfiI	CCNNNNNNNGG	2 cut(s)	332, 436
AflIII	ACRYGT	1 cut(s)	458
AgsI	TTSAA	5 cut(s)	136, 192, 568, 608, 805
AjuI	GAANNNNNNNTTGG	2 cut(s)	58, 90
AluBI	AGCT	5 cut(s)	121, 273, 572, 667, 801
AluI	AGCT	5 cut(s)	121, 273, 572, 667, 801
Alw26I	GTCTC	1 cut(s)	736
AlwI	GGATC	1 cut(s)	798
Aor51HI	AGCGCT	1 cut(s)	92
AoxI	GGCC	1 cut(s)	836
ApeKI	GCWGC	4 cut(s)	121, 623, 664, 763
ApoI	RAATTY	1 cut(s)	344
AspLEI	GCGC	1 cut(s)	93
AsuHPI	GGTGA	6 cut(s)	376, 418, 434, 463, 599, 628
BbsI	GAAGAC	1 cut(s)	461
BbvI	GCAGC	4 cut(s)	108, 610, 676, 750
BccI	CCATC	2 cut(s)	322, 704
BclI	TGATCA	1 cut(s)	520
BcoDI	GTCTC	1 cut(s)	736
BfaI	CTAG	4 cut(s)	125, 389, 725, 840
BfmI	CTRYAG	2 cut(s)	81, 764
BfoI	RGCGCY	1 cut(s)	94
BfuAI	ACCTGC	1 cut(s)	323
BisI	GCNGC	4 cut(s)	122, 624, 665, 764
BlsI	GCNGC	4 cut(s)	123, 625, 666, 765
BmiI	GGNNCC	1 cut(s)	382
BmsI	GCATC	2 cut(s)	495, 651
BoxI	GACNNNNGTC	1 cut(s)	461
BpiI	GAAGAC	1 cut(s)	461
BplI	GAGNNNNNCTC	2 cut(s)	629, 661
Bsa29I	ATCGAT	1 cut(s)	793
BsaAI	YACGTR	1 cut(s)	867
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 436
Bse1I	ACTGG	2 cut(s)	485, 792
BseCI	ATCGAT	1 cut(s)	793
BseGI	GGATG	1 cut(s)	426
BseLI	CCNNNNNNNGG	2 cut(s)	332, 436
BseMII	CTCAG	2 cut(s)	585, 772
BseNI	ACTGG	2 cut(s)	485, 792
BseRI	GAGGAG	2 cut(s)	101, 522
BseXI	GCAGC	4 cut(s)	108, 610, 676, 750
BseYI	CCCAGC	1 cut(s)	273
Bsh1236I	CGCG	1 cut(s)	460
Bsh1285I	CGRYCG	1 cut(s)	797
BshFI	GGCC	1 cut(s)	838
BshVI	ATCGAT	1 cut(s)	793
BsiEI	CGRYCG	1 cut(s)	797
BsiSI	CCGG	1 cut(s)	47
BslI	CCNNNNNNNGG	2 cut(s)	332, 436
BsmAI	GTCTC	1 cut(s)	736
BsnI	GGCC	1 cut(s)	838
Bsp143I	GATC	4 cut(s)	520, 750, 790, 794
BspACI	CCGC	2 cut(s)	303, 830
BspANI	GGCC	1 cut(s)	838
BspCNI	CTCAG	2 cut(s)	586, 771
BspDI	ATCGAT	1 cut(s)	793
BspFNI	CGCG	1 cut(s)	460
BspLI	GGNNCC	1 cut(s)	382
BspMAI	CTGCAG	1 cut(s)	768
BspMI	ACCTGC	1 cut(s)	323
BspPI	GGATC	1 cut(s)	798
BsrI	ACTGG	2 cut(s)	485, 792
BssMI	GATC	4 cut(s)	520, 750, 790, 794
BssNAI	GTATAC	1 cut(s)	785
Bst1107I	GTATAC	1 cut(s)	785
Bst4CI	ACNGT	4 cut(s)	19, 196, 222, 248
BstBAI	YACGTR	1 cut(s)	867
BstC8I	GCNNGC	2 cut(s)	685, 830
BstDEI	CTNAG	2 cut(s)	594, 758
BstEII	GGTNACC	1 cut(s)	440
BstF5I	GGATG	1 cut(s)	426
BstFNI	CGCG	1 cut(s)	460
BstH2I	RGCGCY	1 cut(s)	94
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	4 cut(s)	523, 753, 793, 797
BstMAI	GTCTC	1 cut(s)	736
BstMBI	GATC	4 cut(s)	520, 750, 790, 794
BstMCI	CGRYCG	1 cut(s)	797
BstMWI	GCNNNNNNNGC	2 cut(s)	629, 664
BstPAI	GACNNNNGTC	1 cut(s)	461
BstPI	GGTNACC	1 cut(s)	440
BstSFI	CTRYAG	2 cut(s)	81, 764
BstUI	CGCG	1 cut(s)	460
BstV1I	GCAGC	4 cut(s)	108, 610, 676, 750
BstV2I	GAAGAC	1 cut(s)	461
BstZ17I	GTATAC	1 cut(s)	785
Bsu15I	ATCGAT	1 cut(s)	793
BsuRI	GGCC	1 cut(s)	838
BsuTUI	ATCGAT	1 cut(s)	793
BtsCI	GGATG	1 cut(s)	426
BveI	ACCTGC	1 cut(s)	323
Cac8I	GCNNGC	2 cut(s)	685, 830
CfoI	GCGC	1 cut(s)	93
ClaI	ATCGAT	1 cut(s)	793
CseI	GACGC	1 cut(s)	466
Csp6I	GTAC	1 cut(s)	395
CviAII	CATG	1 cut(s)	156
CviQI	GTAC	1 cut(s)	395
DdeI	CTNAG	2 cut(s)	594, 758
DpnI	GATC	4 cut(s)	522, 752, 792, 796
DpnII	GATC	4 cut(s)	520, 750, 790, 794
DrdI	GACNNNNNNGTC	1 cut(s)	422
DseDI	GACNNNNNNGTC	1 cut(s)	422
Eco47III	AGCGCT	1 cut(s)	92
Eco91I	GGTNACC	1 cut(s)	440
EcoO65I	GGTNACC	1 cut(s)	440
FaeI	CATG	1 cut(s)	159
FalI	AAGNNNNNCTT	2 cut(s)	403, 435
FatI	CATG	1 cut(s)	155
FauI	CCCGC	1 cut(s)	837
FbaI	TGATCA	1 cut(s)	520
FblI	GTMKAC	2 cut(s)	729, 784
Fnu4HI	GCNGC	4 cut(s)	122, 624, 665, 764
FokI	GGATG	1 cut(s)	413
Fsp4HI	GCNGC	4 cut(s)	122, 624, 665, 764
FspBI	CTAG	4 cut(s)	125, 389, 725, 840
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	4 cut(s)	122, 624, 665, 764
GsaI	CCCAGC	1 cut(s)	277
HaeII	RGCGCY	1 cut(s)	94
HaeIII	GGCC	1 cut(s)	838
HapII	CCGG	1 cut(s)	47
HgaI	GACGC	1 cut(s)	466
HhaI	GCGC	1 cut(s)	93
Hin1II	CATG	1 cut(s)	159
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HinfI	GANTC	2 cut(s)	74, 287
HpaII	CCGG	1 cut(s)	47
HphI	GGTGA	6 cut(s)	376, 418, 434, 463, 599, 628
Hpy166II	GTNNAC	3 cut(s)	22, 730, 785
Hpy188I	TCNGA	2 cut(s)	142, 292
Hpy188III	TCNNGA	2 cut(s)	133, 518
Hpy8I	GTNNAC	3 cut(s)	22, 730, 785
HpyAV	CCTTC	2 cut(s)	304, 845
HpyCH4III	ACNGT	4 cut(s)	19, 196, 222, 248
HpyCH4IV	ACGT	3 cut(s)	423, 563, 866
HpyCH4V	TGCA	3 cut(s)	434, 664, 766
HpyF10VI	GCNNNNNNNGC	2 cut(s)	629, 664
HpyF3I	CTNAG	2 cut(s)	594, 758
HpySE526I	ACGT	3 cut(s)	423, 563, 866
Hsp92II	CATG	1 cut(s)	159
HspAI	GCGC	1 cut(s)	91
Ksp22I	TGATCA	1 cut(s)	520
Kzo9I	GATC	4 cut(s)	520, 750, 790, 794
LmnI	GCTCC	1 cut(s)	88
Lsp1109I	GCAGC	4 cut(s)	108, 610, 676, 750
LweI	GCATC	2 cut(s)	495, 651
MaeI	CTAG	4 cut(s)	125, 389, 725, 840
MaeII	ACGT	3 cut(s)	423, 563, 866
MaeIII	GTNAC	4 cut(s)	266, 406, 413, 440
MalI	GATC	4 cut(s)	522, 752, 792, 796
MboI	GATC	4 cut(s)	520, 750, 790, 794
MboII	GAAGA	3 cut(s)	69, 291, 466
MluCI	AATT	5 cut(s)	187, 344, 357, 513, 861
MluI	ACGCGT	1 cut(s)	458
MlyI	GAGTC	1 cut(s)	281
MmeI	TCCRAC	1 cut(s)	331
MnlI	CCTC	8 cut(s)	28, 79, 540, 543, 583, 655, 771, 824
MseI	TTAA	4 cut(s)	360, 375, 480, 818
MspA1I	CMGCKG	1 cut(s)	273
MspI	CCGG	1 cut(s)	47
MvnI	CGCG	1 cut(s)	460
MwoI	GCNNNNNNNGC	2 cut(s)	629, 664
NdeII	GATC	4 cut(s)	520, 750, 790, 794
NlaIII	CATG	1 cut(s)	159
NlaIV	GGNNCC	1 cut(s)	382
NmuCI	GTSAC	3 cut(s)	406, 413, 440
PfeI	GAWTC	1 cut(s)	74
PkrI	GCNGC	4 cut(s)	123, 625, 666, 765
Ple19I	CGATCG	1 cut(s)	797
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
Ppu21I	YACGTR	1 cut(s)	867
PshAI	GACNNNNGTC	1 cut(s)	461
PspEI	GGTNACC	1 cut(s)	440
PspFI	CCCAGC	1 cut(s)	273
PspN4I	GGNNCC	1 cut(s)	382
PstI	CTGCAG	1 cut(s)	768
PvuI	CGATCG	1 cut(s)	797
PvuII	CAGCTG	1 cut(s)	273
RsaI	GTAC	1 cut(s)	396
RsaNI	GTAC	1 cut(s)	395
SaqAI	TTAA	4 cut(s)	360, 375, 480, 818
SatI	GCNGC	4 cut(s)	122, 624, 665, 764
Sau3AI	GATC	4 cut(s)	520, 750, 790, 794
SchI	GAGTC	1 cut(s)	281
SfaNI	GCATC	2 cut(s)	495, 651
SfcI	CTRYAG	2 cut(s)	81, 764
Sse9I	AATT	5 cut(s)	187, 344, 357, 513, 861
SsiI	CCGC	2 cut(s)	303, 830
SspMI	CTAG	4 cut(s)	125, 389, 725, 840
TaaI	ACNGT	4 cut(s)	19, 196, 222, 248
TaiI	ACGT	3 cut(s)	426, 566, 869
TaqI	TCGA	3 cut(s)	342, 793, 797
TasI	AATT	5 cut(s)	187, 344, 357, 513, 861
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	4 cut(s)	360, 375, 480, 818
Tru9I	TTAA	4 cut(s)	360, 375, 480, 818
TseFI	GTSAC	3 cut(s)	406, 413, 440
TseI	GCWGC	4 cut(s)	121, 623, 664, 763
Tsp45I	GTSAC	3 cut(s)	406, 413, 440
TspDTI	ATGAA	1 cut(s)	159
XapI	RAATTY	1 cut(s)	344
XmiI	GTMKAC	2 cut(s)	729, 784
XspI	CTAG	4 cut(s)	125, 389, 725, 840

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.