Rh1BG047400

ADP-ribosylation factor GTPase-activating protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0004089
Physical Location & Seq
Forward (+)
6528256 .. 6533764
5509 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG047400.1

Sequence Viewer

Length: 1089 bp
ATGAAGATGGCTGCCCATCAAGAAAATTCTGGCAATGTTTCCGGACAAGGTTCTTGCCTATATGATCTCTTATGTTCAGATGCACCCAATTGGAGAACCCAAAGTGATCGACGGCAATTATCTGGTCCACAAGAAAGGCTGGAGTTTTTGCTGCATCAATCTGTCAACAAGTCCTGTGCTGATTGTGGATCTCCAGATCCAAAATGGGTATCTTTAAACTTTGGAGTATTTATTTGCATCAAGTGTTCTGGTGTACATAGAAGCCTTGGAGTGCATATTTCAAAGGTTGTTTCAGTGAAGCTAGATGAATGGACAGATGAACAAGTTGATGGCCTGGCAAGTATGGGTGGAAATATTACTGTAAACAAGAAGTATGAAGCTTGCATGCCACAAAATGTTCGAAAACCAAAACCAGATTCTTCTATAGAGGAGCGTTTTTATTTTATTAGGAGAAAATATGAGCTGCAAGACTTTTTAAACACAGCTGATCAGATTCAGATGTCCTGTCCTTTCCCGCCTTCTCACCAGAGACATTCTTCTACCAATTCTTCAAGCATTACTTATAGCCAAGACAAGAAACAATGTGAGAAGCAAAATACTAAAAATCGTATCGGGCAGGCATTTCGTAACAGCTGGGGAAGAAAAGACTCTGAACACAAGTCCGCAAAGAAGGGCAGCTCAATGTCCATGGCAGGTATGGTTGAATTTGTTGGATTAATTAAAGTGAACGTGGTCAGAGGAACAAACCTAGTTGTCCGGGATGTGGTGACAAGTGATCCCTATGTTATCCTTGCATTGGGTCACCAACTGGTGTATGACAAGGATACATTCACAACTGATGATTATATGGGTGAGGCTGAGATTGACATTCAGCCTCTGGTCACCGCTGCTGTAGCCTTTGAGAAGTCTTCACTCAATGAGTCAATGCAGCTGGGAAAGTGGGTAGCCAGCAAAGATAACACCCTAGTAAAAGATGGTGTCATCAACCTAATAGATGGGAAAGTAAGACAGCACATCGCTCTTAGGCTGCAGAATGTTGAGAGAGGTGTATTAGAGATTGAGTTGGAATGTGTTCCTCTTACTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
ArfGap C2

Protein Analysis

362

Amino Acids

40.51

Weight (kDa)

7.56

Isoelectric Point (pI)

50.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ArfGap PF01412 45 - 160 7.8e-37 Putative GTPase activating protein for Arf
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 683
AccIII TCCGGA 1 cut(s) 41
AciI CCGC 3 cut(s) 515, 663, 885
AclWI GGATC 3 cut(s) 191, 196, 770
AcsI RAATTY 2 cut(s) 25, 704
AfaI GTAC 1 cut(s) 255
AfiI CCNNNNNNNGG 2 cut(s) 763, 796
AgsI TTSAA 3 cut(s) 282, 552, 704
AjnI CCWGG 1 cut(s) 333
AjuI GAANNNNNNNTTGG 2 cut(s) 400, 432
AluBI AGCT 7 cut(s) 301, 380, 463, 485, 633, 678, 931
AluI AGCT 7 cut(s) 301, 380, 463, 485, 633, 678, 931
Alw26I GTCTC 1 cut(s) 523
AlwI GGATC 3 cut(s) 191, 196, 770
AlwNI CAGNNNCTG 1 cut(s) 877
Aor13HI TCCGGA 1 cut(s) 41
AoxI GGCC 1 cut(s) 331
ApeKI GCWGC 7 cut(s) 11, 151, 463, 675, 887, 928, 1027
ApoI RAATTY 2 cut(s) 25, 704
AseI ATTAAT 1 cut(s) 716
Asp700I GAANNNNTTC 1 cut(s) 1071
AspS9I GGNCC 1 cut(s) 125
AsuC2I CCSGG 1 cut(s) 758
AsuHPI GGTGA 5 cut(s) 515, 778, 794, 863, 874
AsuII TTCGAA 1 cut(s) 400
AvaII GGWCC 1 cut(s) 125
BbsI GAAGAC 1 cut(s) 900
BbvI GCAGC 6 cut(s) 138, 450, 687, 874, 940, 1014
BccI CCATC 4 cut(s) 24, 323, 968, 989
BceAI ACGGC 1 cut(s) 128
BcgI CGANNNNNNTGC 2 cut(s) 605, 639
BciT130I CCWGG 1 cut(s) 335
BciVI GTATCC 1 cut(s) 817
BclI TGATCA 1 cut(s) 487
BcnI CCSGG 1 cut(s) 758
BcoDI GTCTC 1 cut(s) 523
BfaI CTAG 3 cut(s) 302, 749, 965
BfmI CTRYAG 3 cut(s) 423, 891, 1028
BfuAI ACCTGC 1 cut(s) 683
BfuI GTATCC 1 cut(s) 817
BisI GCNGC 7 cut(s) 12, 152, 464, 676, 888, 929, 1028
BlsI GCNGC 7 cut(s) 13, 153, 465, 677, 889, 930, 1029
Bme1390I CCNGG 2 cut(s) 335, 758
Bme18I GGWCC 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 125
BmrFI CCNGG 2 cut(s) 335, 758
BmsI GCATC 3 cut(s) 70, 163, 246
BpiI GAAGAC 1 cut(s) 900
BpmI CTGGAG 2 cut(s) 161, 177
Bpu14I TTCGAA 1 cut(s) 400
BpuMI CCSGG 1 cut(s) 758
BsaJI CCNNGG 2 cut(s) 265, 687
BsaWI WCCGGW 1 cut(s) 41
Bsc4I CCNNNNNNNGG 2 cut(s) 763, 796
Bse1I ACTGG 1 cut(s) 813
Bse3DI GCAATG 1 cut(s) 40
BseAI TCCGGA 1 cut(s) 41
BseBI CCWGG 1 cut(s) 335
BseDI CCNNGG 2 cut(s) 265, 687
BseGI GGATG 1 cut(s) 766
BseLI CCNNNNNNNGG 2 cut(s) 763, 796
BseMI GCAATG 1 cut(s) 40
BseMII CTCAG 1 cut(s) 849
BseNI ACTGG 1 cut(s) 813
BseRI GAGGAG 1 cut(s) 443
BseXI GCAGC 6 cut(s) 138, 450, 687, 874, 940, 1014
BseYI CCCAGC 2 cut(s) 633, 931
BshFI GGCC 1 cut(s) 333
BsiSI CCGG 2 cut(s) 42, 757
BslI CCNNNNNNNGG 2 cut(s) 763, 796
BsmAI GTCTC 1 cut(s) 523
BsnI GGCC 1 cut(s) 333
Bsp119I TTCGAA 1 cut(s) 400
Bsp13I TCCGGA 1 cut(s) 41
Bsp1407I TGTACA 1 cut(s) 253
Bsp143I GATC 6 cut(s) 64, 106, 188, 196, 487, 775
Bsp19I CCATGG 1 cut(s) 687
BspACI CCGC 3 cut(s) 515, 663, 885
BspANI GGCC 1 cut(s) 333
BspCNI CTCAG 1 cut(s) 850
BspEI TCCGGA 1 cut(s) 41
BspMAI CTGCAG 1 cut(s) 1032
BspMI ACCTGC 1 cut(s) 683
BspPI GGATC 3 cut(s) 191, 196, 770
BspT104I TTCGAA 1 cut(s) 400
BsrDI GCAATG 1 cut(s) 40
BsrGI TGTACA 1 cut(s) 253
BsrI ACTGG 1 cut(s) 813
BssECI CCNNGG 2 cut(s) 265, 687
BssMI GATC 6 cut(s) 64, 106, 188, 196, 487, 775
BssT1I CCWWGG 2 cut(s) 265, 687
Bst2UI CCWGG 1 cut(s) 335
Bst4CI ACNGT 1 cut(s) 361
BstAUI TGTACA 1 cut(s) 253
BstBI TTCGAA 1 cut(s) 400
BstC8I GCNNGC 4 cut(s) 382, 386, 618, 949
BstDEI CTNAG 2 cut(s) 858, 1022
BstDSI CCRYGG 1 cut(s) 687
BstEII GGTNACC 2 cut(s) 800, 880
BstF5I GGATG 1 cut(s) 766
BstKTI GATC 6 cut(s) 67, 109, 191, 199, 490, 778
BstMAI GTCTC 1 cut(s) 523
BstMBI GATC 6 cut(s) 64, 106, 188, 196, 487, 775
BstMWI GCNNNNNNNGC 1 cut(s) 893
BstNI CCWGG 1 cut(s) 335
BstNSI RCATGY 1 cut(s) 388
BstPI GGTNACC 2 cut(s) 800, 880
BstSCI CCNGG 2 cut(s) 333, 756
BstSFI CTRYAG 3 cut(s) 423, 891, 1028
BstV1I GCAGC 6 cut(s) 138, 450, 687, 874, 940, 1014
BstV2I GAAGAC 1 cut(s) 900
BstX2I RGATCY 2 cut(s) 188, 196
BstYI RGATCY 2 cut(s) 188, 196
BsuI GTATCC 1 cut(s) 817
BsuRI GGCC 1 cut(s) 333
BtgI CCRYGG 1 cut(s) 687
BtgZI GCGATG 1 cut(s) 1000
BtsCI GGATG 1 cut(s) 766
BtsIMutI CAGTG 1 cut(s) 300
BveI ACCTGC 1 cut(s) 683
Cac8I GCNNGC 4 cut(s) 382, 386, 618, 949
CaiI CAGNNNCTG 1 cut(s) 877
Cfr13I GGNCC 1 cut(s) 125
Csp6I GTAC 1 cut(s) 254
CviAII CATG 2 cut(s) 385, 688
CviQI GTAC 1 cut(s) 254
DdeI CTNAG 2 cut(s) 858, 1022
DpnI GATC 6 cut(s) 66, 108, 190, 198, 489, 777
DpnII GATC 6 cut(s) 64, 106, 188, 196, 487, 775
DraI TTTAAA 2 cut(s) 216, 477
Eco130I CCWWGG 2 cut(s) 265, 687
Eco47I GGWCC 1 cut(s) 125
Eco91I GGTNACC 2 cut(s) 800, 880
EcoO65I GGTNACC 2 cut(s) 800, 880
EcoRII CCWGG 1 cut(s) 333
EcoT14I CCWWGG 2 cut(s) 265, 687
ErhI CCWWGG 2 cut(s) 265, 687
FaeI CATG 2 cut(s) 388, 691
FalI AAGNNNNNCTT 2 cut(s) 544, 576
FatI CATG 2 cut(s) 384, 687
FauI CCCGC 1 cut(s) 522
FbaI TGATCA 1 cut(s) 487
Fnu4HI GCNGC 7 cut(s) 12, 152, 464, 676, 888, 929, 1028
FokI GGATG 1 cut(s) 773
Fsp4HI GCNGC 7 cut(s) 12, 152, 464, 676, 888, 929, 1028
FspBI CTAG 3 cut(s) 302, 749, 965
GluI GCNGC 7 cut(s) 12, 152, 464, 676, 888, 929, 1028
GsaI CCCAGC 2 cut(s) 637, 935
GsuI CTGGAG 2 cut(s) 161, 177
HaeIII GGCC 1 cut(s) 333
HapII CCGG 2 cut(s) 42, 757
Hin1II CATG 2 cut(s) 388, 691
HincII GTYRAC 1 cut(s) 166
HindII GTYRAC 1 cut(s) 166
HindIII AAGCTT 1 cut(s) 378
HinfI GANTC 4 cut(s) 416, 493, 647, 920
HpaII CCGG 2 cut(s) 42, 757
HphI GGTGA 5 cut(s) 515, 778, 794, 863, 874
Hpy166II GTNNAC 5 cut(s) 128, 166, 254, 364, 727
Hpy188I TCNGA 5 cut(s) 79, 492, 498, 652, 737
Hpy188III TCNNGA 3 cut(s) 20, 42, 194
Hpy8I GTNNAC 5 cut(s) 128, 166, 254, 364, 727
Hpy99I CGWCG 1 cut(s) 114
HpyAV CCTTC 2 cut(s) 528, 664
HpyCH4III ACNGT 1 cut(s) 361
HpyCH4IV ACGT 1 cut(s) 729
HpyCH4V TGCA 9 cut(s) 83, 154, 237, 274, 384, 466, 794, 928, 1030
HpyF10VI GCNNNNNNNGC 1 cut(s) 893
HpyF3I CTNAG 2 cut(s) 858, 1022
HpySE526I ACGT 1 cut(s) 729
Hsp92II CATG 2 cut(s) 388, 691
Kpn2I TCCGGA 1 cut(s) 41
Ksp22I TGATCA 1 cut(s) 487
Kzo9I GATC 6 cut(s) 64, 106, 188, 196, 487, 775
LmnI GCTCC 1 cut(s) 430
Lsp1109I GCAGC 6 cut(s) 138, 450, 687, 874, 940, 1014
LweI GCATC 3 cut(s) 70, 163, 246
MaeI CTAG 3 cut(s) 302, 749, 965
MaeII ACGT 1 cut(s) 729
MaeIII GTNAC 4 cut(s) 626, 766, 800, 880
MalI GATC 6 cut(s) 66, 108, 190, 198, 489, 777
MboI GATC 6 cut(s) 64, 106, 188, 196, 487, 775
MboII GAAGA 6 cut(s) 16, 411, 528, 540, 651, 900
MfeI CAATTG 1 cut(s) 88
MflI RGATCY 2 cut(s) 188, 196
MluCI AATT 6 cut(s) 25, 88, 116, 544, 704, 717
MlyI GAGTC 2 cut(s) 641, 929
MmeI TCCRAC 2 cut(s) 691, 1044
MnlI CCTC 6 cut(s) 421, 731, 847, 885, 1037, 1086
MroI TCCGGA 1 cut(s) 41
MroXI GAANNNNTTC 1 cut(s) 1071
MseI TTAA 4 cut(s) 215, 476, 716, 720
MspA1I CMGCKG 4 cut(s) 485, 633, 887, 931
MspI CCGG 2 cut(s) 42, 757
MspR9I CCNGG 2 cut(s) 335, 758
MunI CAATTG 1 cut(s) 88
MvaI CCWGG 1 cut(s) 335
MwoI GCNNNNNNNGC 1 cut(s) 893
NciI CCSGG 1 cut(s) 758
NcoI CCATGG 1 cut(s) 687
NdeII GATC 6 cut(s) 64, 106, 188, 196, 487, 775
NlaIII CATG 2 cut(s) 388, 691
NmuCI GTSAC 3 cut(s) 766, 800, 880
NspI RCATGY 1 cut(s) 388
NspV TTCGAA 1 cut(s) 400
PacI TTAATTAA 1 cut(s) 720
PaeI GCATGC 1 cut(s) 388
PdmI GAANNNNTTC 1 cut(s) 1071
PfeI GAWTC 2 cut(s) 416, 493
PfoI TCCNGGA 1 cut(s) 756
PkrI GCNGC 7 cut(s) 13, 153, 465, 677, 889, 930, 1029
PleI GAGTC 2 cut(s) 641, 928
PpsI GAGTC 2 cut(s) 641, 928
PshBI ATTAAT 1 cut(s) 716
Psp6I CCWGG 1 cut(s) 333
PspEI GGTNACC 2 cut(s) 800, 880
PspFI CCCAGC 2 cut(s) 633, 931
PspGI CCWGG 1 cut(s) 333
PspPI GGNCC 1 cut(s) 125
PstI CTGCAG 1 cut(s) 1032
PstNI CAGNNNCTG 1 cut(s) 877
PsuI RGATCY 2 cut(s) 188, 196
PvuII CAGCTG 3 cut(s) 485, 633, 931
RsaI GTAC 1 cut(s) 255
RsaNI GTAC 1 cut(s) 254
SaqAI TTAA 4 cut(s) 215, 476, 716, 720
SatI GCNGC 7 cut(s) 12, 152, 464, 676, 888, 929, 1028
Sau3AI GATC 6 cut(s) 64, 106, 188, 196, 487, 775
Sau96I GGNCC 1 cut(s) 125
SchI GAGTC 2 cut(s) 641, 929
ScrFI CCNGG 2 cut(s) 335, 758
SfaNI GCATC 3 cut(s) 70, 163, 246
SfcI CTRYAG 3 cut(s) 423, 891, 1028
SfuI TTCGAA 1 cut(s) 400
SinI GGWCC 1 cut(s) 125
SphI GCATGC 1 cut(s) 388
Sse9I AATT 6 cut(s) 25, 88, 116, 544, 704, 717
SsiI CCGC 3 cut(s) 515, 663, 885
SspI AATATT 1 cut(s) 355
SspMI CTAG 3 cut(s) 302, 749, 965
StyD4I CCNGG 2 cut(s) 333, 756
StyI CCWWGG 2 cut(s) 265, 687
TaaI ACNGT 1 cut(s) 361
TaiI ACGT 1 cut(s) 732
TaqI TCGA 2 cut(s) 109, 400
TasI AATT 6 cut(s) 25, 88, 116, 544, 704, 717
TatI WGTACW 1 cut(s) 253
TfiI GAWTC 2 cut(s) 416, 493
Tru1I TTAA 4 cut(s) 215, 476, 716, 720
Tru9I TTAA 4 cut(s) 215, 476, 716, 720
TscAI CASTG 1 cut(s) 300
TseFI GTSAC 3 cut(s) 766, 800, 880
TseI GCWGC 7 cut(s) 11, 151, 463, 675, 887, 928, 1027
Tsp45I GTSAC 3 cut(s) 766, 800, 880
TspDTI ATGAA 4 cut(s) 17, 321, 333, 390
TspRI CASTG 1 cut(s) 300
VpaK11BI GGWCC 1 cut(s) 125
VspI ATTAAT 1 cut(s) 716
XapI RAATTY 2 cut(s) 25, 704
XceI RCATGY 1 cut(s) 388
XcmI CCANNNNNNNNNTGG 2 cut(s) 201, 694
XmnI GAANNNNTTC 1 cut(s) 1071
XspI CTAG 3 cut(s) 302, 749, 965
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.