Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0004089

Physical Location & Seq

Genomic Coordinates Forward (+)

10848602 .. 10864405

Gene Structure 15804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG055700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGAAGATGGCTGCCCATCAAGAAAAATCCGGCAATGGTTCCGGACAAGGTTCTTGCCTATATGATCTCTTATGTTCAGATGCACCCAATTGGAGAACCCAAAGTGATCGACGGCAATTATCTGGTCCACAAGAAAGGCTGGAGTTTTTGCTGCATCAATCTGCCAACAAGTCCTGTGCTGATTGTGGATCTCCAGATCCAAAATGGGTATCTTTAAACTTTGGAGTATTTATTTGCATCAAGTGTTCTGGTGTACATAGAAGCCTTGGAGTGCATATTTCAAAGGTTGTTTCAGTGAAGCTAGATGAATGGACAGATGAACAAGTTGATGGCCTGGCAAGTATGGGTGGAAATATTACTGTAAACAAGAAGTATGAAGCTTGCATGCCACAAAATGTTCGAAAACCAAAACCAGATTCTTCTATAGAGGAGCGTTTTTATTTTATTAGGAGAAAATATGAGCTGCAAGACTTTTTAAACACAGCTGATCAGATTCAGATGTCCTGCCCTTTCCTGCCTTCTCATAAGAGACATTCTTCTACCAATTCTTCAAGCATTACTTATAGCCAAGACAAGAAACAATGTGAGAAGCAAAATACCAAAAATCGTATCGGGCAGGCATTTCGTAACAGCTGGGGAAGAAAAGACTCTGAACACAAGTCCGCAAAGAAGGGCAGCTCAATGTCCATGGCAGGTATGGTTGAATTTGTTGGATTAATTAAAGTGAACGTGGTCAGAGGAACAAACCTAGTTGTCCGGGATGTGGTGACAAGTGATCCTTATGTTATCCTTGCATTGGGTCACCAATCAGTGAAGACACGTGTAATAAAGAACAACTTGAATCCAGTGTGGAATGAAAGTCTGATGCTGTCGATTCCTGAACAGATTCCTCCTCTAAAAGTAGTAAGTTATTTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ArfGap C2

Protein Analysis

306

Amino Acids

34.37

Weight (kDa)

9.28

Isoelectric Point (pI)

53.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArfGap	PF01412	45 - 160	2.1e-37	Putative GTPase activating protein for Arf
C2	PF00168	239 - 299	6.3e-14	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07940 AT3G07940
fragaria_vesca	FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820
malus_domestica	MD02G1289600.v1.1 MD07G1037300.v1.1
prunus_persica	Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1
pyrus_communis	pycom02g24520 pycom07g02610
rosa_chinensis	RchiOBHm_Chr1g0323271
rosa_laevigata	RLG00000030341
rosa_multiflora	Rmu_sc0002263.1_g000073 Rmu_sc0003418.1_g000004
rosa_roxburghii	Rroxscaffold_4G00326710
rosa_rugosa	Rorug01G0037200 Rorug01G0037300
rosa_samantha	Rh1AG054500 Rh1BG047400 Rh1CG055700 Rh1DG059600
rosa_wichuraiana	Rw1G004740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	683
AccIII	TCCGGA	1 cut(s)	41
AciI	CCGC	1 cut(s)	663
AclWI	GGATC	3 cut(s)	191, 196, 770
AcsI	RAATTY	1 cut(s)	704
AcvI	CACGTG	1 cut(s)	821
AfaI	GTAC	1 cut(s)	255
AfiI	CCNNNNNNNGG	2 cut(s)	763, 796
AflIII	ACRYGT	2 cut(s)	818, 820
AgsI	TTSAA	4 cut(s)	282, 552, 704, 841
AjnI	CCWGG	1 cut(s)	333
AjuI	GAANNNNNNNTTGG	2 cut(s)	400, 432
AluBI	AGCT	6 cut(s)	301, 380, 463, 485, 633, 678
AluI	AGCT	6 cut(s)	301, 380, 463, 485, 633, 678
Alw26I	GTCTC	1 cut(s)	523
AlwI	GGATC	3 cut(s)	191, 196, 770
Aor13HI	TCCGGA	1 cut(s)	41
AoxI	GGCC	1 cut(s)	331
ApeKI	GCWGC	4 cut(s)	11, 151, 463, 675
ApoI	RAATTY	1 cut(s)	704
AseI	ATTAAT	1 cut(s)	716
Asp700I	GAANNNNTTC	1 cut(s)	885
AspS9I	GGNCC	1 cut(s)	125
AsuC2I	CCSGG	1 cut(s)	758
AsuHPI	GGTGA	2 cut(s)	778, 794
AsuII	TTCGAA	1 cut(s)	400
AvaII	GGWCC	1 cut(s)	125
BbrPI	CACGTG	1 cut(s)	821
BbsI	GAAGAC	1 cut(s)	821
BbvI	GCAGC	3 cut(s)	138, 450, 687
BccI	CCATC	2 cut(s)	24, 323
BceAI	ACGGC	1 cut(s)	128
BcgI	CGANNNNNNTGC	2 cut(s)	605, 639
BciT130I	CCWGG	1 cut(s)	335
BclI	TGATCA	1 cut(s)	487
BcnI	CCSGG	1 cut(s)	758
BcoDI	GTCTC	1 cut(s)	523
BfaI	CTAG	2 cut(s)	302, 749
BfmI	CTRYAG	1 cut(s)	423
BfuAI	ACCTGC	1 cut(s)	683
BisI	GCNGC	4 cut(s)	12, 152, 464, 676
BlsI	GCNGC	4 cut(s)	13, 153, 465, 677
Bme1390I	CCNGG	2 cut(s)	335, 758
Bme18I	GGWCC	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	125
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	2 cut(s)	335, 758
BmsI	GCATC	4 cut(s)	70, 163, 246, 855
BpiI	GAAGAC	1 cut(s)	821
BpmI	CTGGAG	2 cut(s)	161, 177
Bpu14I	TTCGAA	1 cut(s)	400
BpuMI	CCSGG	1 cut(s)	758
BsaAI	YACGTR	1 cut(s)	821
BsaJI	CCNNGG	2 cut(s)	265, 687
BsaWI	WCCGGW	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	2 cut(s)	763, 796
Bse1I	ACTGG	1 cut(s)	845
Bse3DI	GCAATG	1 cut(s)	40
BseAI	TCCGGA	1 cut(s)	41
BseBI	CCWGG	1 cut(s)	335
BseDI	CCNNGG	2 cut(s)	265, 687
BseGI	GGATG	1 cut(s)	766
BseLI	CCNNNNNNNGG	2 cut(s)	763, 796
BseMI	GCAATG	1 cut(s)	40
BseNI	ACTGG	1 cut(s)	845
BseRI	GAGGAG	2 cut(s)	443, 882
BseXI	GCAGC	3 cut(s)	138, 450, 687
BseYI	CCCAGC	1 cut(s)	633
BshFI	GGCC	1 cut(s)	333
BsiSI	CCGG	3 cut(s)	30, 42, 757
BslI	CCNNNNNNNGG	2 cut(s)	763, 796
BsmAI	GTCTC	1 cut(s)	523
BsnI	GGCC	1 cut(s)	333
Bsp119I	TTCGAA	1 cut(s)	400
Bsp13I	TCCGGA	1 cut(s)	41
Bsp1407I	TGTACA	1 cut(s)	253
Bsp143I	GATC	6 cut(s)	64, 106, 188, 196, 487, 775
Bsp19I	CCATGG	1 cut(s)	687
BspACI	CCGC	1 cut(s)	663
BspANI	GGCC	1 cut(s)	333
BspEI	TCCGGA	1 cut(s)	41
BspLI	GGNNCC	1 cut(s)	40
BspMI	ACCTGC	1 cut(s)	683
BspPI	GGATC	3 cut(s)	191, 196, 770
BspT104I	TTCGAA	1 cut(s)	400
BsrDI	GCAATG	1 cut(s)	40
BsrGI	TGTACA	1 cut(s)	253
BsrI	ACTGG	1 cut(s)	845
BssECI	CCNNGG	2 cut(s)	265, 687
BssMI	GATC	6 cut(s)	64, 106, 188, 196, 487, 775
BssT1I	CCWWGG	2 cut(s)	265, 687
Bst2UI	CCWGG	1 cut(s)	335
Bst4CI	ACNGT	1 cut(s)	361
BstAUI	TGTACA	1 cut(s)	253
BstBAI	YACGTR	1 cut(s)	821
BstBI	TTCGAA	1 cut(s)	400
BstC8I	GCNNGC	3 cut(s)	382, 386, 618
BstDSI	CCRYGG	1 cut(s)	687
BstEII	GGTNACC	1 cut(s)	800
BstF5I	GGATG	1 cut(s)	766
BstKTI	GATC	6 cut(s)	67, 109, 191, 199, 490, 778
BstMAI	GTCTC	1 cut(s)	523
BstMBI	GATC	6 cut(s)	64, 106, 188, 196, 487, 775
BstNI	CCWGG	1 cut(s)	335
BstNSI	RCATGY	1 cut(s)	388
BstPI	GGTNACC	1 cut(s)	800
BstSCI	CCNGG	2 cut(s)	333, 756
BstSFI	CTRYAG	1 cut(s)	423
BstV1I	GCAGC	3 cut(s)	138, 450, 687
BstV2I	GAAGAC	1 cut(s)	821
BstX2I	RGATCY	2 cut(s)	188, 196
BstYI	RGATCY	2 cut(s)	188, 196
BsuRI	GGCC	1 cut(s)	333
BtgI	CCRYGG	1 cut(s)	687
BtsCI	GGATG	1 cut(s)	766
BtsIMutI	CAGTG	3 cut(s)	300, 816, 852
BveI	ACCTGC	1 cut(s)	683
Cac8I	GCNNGC	3 cut(s)	382, 386, 618
Cfr13I	GGNCC	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	254
CviAII	CATG	2 cut(s)	385, 688
CviQI	GTAC	1 cut(s)	254
DpnI	GATC	6 cut(s)	66, 108, 190, 198, 489, 777
DpnII	GATC	6 cut(s)	64, 106, 188, 196, 487, 775
DraI	TTTAAA	2 cut(s)	216, 477
Eco130I	CCWWGG	2 cut(s)	265, 687
Eco47I	GGWCC	1 cut(s)	125
Eco72I	CACGTG	1 cut(s)	821
Eco91I	GGTNACC	1 cut(s)	800
EcoO65I	GGTNACC	1 cut(s)	800
EcoRII	CCWGG	1 cut(s)	333
EcoT14I	CCWWGG	2 cut(s)	265, 687
ErhI	CCWWGG	2 cut(s)	265, 687
FaeI	CATG	2 cut(s)	388, 691
FalI	AAGNNNNNCTT	6 cut(s)	544, 576, 763, 795, 821, 853
FatI	CATG	2 cut(s)	384, 687
FbaI	TGATCA	1 cut(s)	487
Fnu4HI	GCNGC	4 cut(s)	12, 152, 464, 676
FokI	GGATG	1 cut(s)	773
Fsp4HI	GCNGC	4 cut(s)	12, 152, 464, 676
FspBI	CTAG	2 cut(s)	302, 749
GluI	GCNGC	4 cut(s)	12, 152, 464, 676
GsaI	CCCAGC	1 cut(s)	637
GsuI	CTGGAG	2 cut(s)	161, 177
HaeIII	GGCC	1 cut(s)	333
HapII	CCGG	3 cut(s)	30, 42, 757
Hin1II	CATG	2 cut(s)	388, 691
HindIII	AAGCTT	1 cut(s)	378
HinfI	GANTC	6 cut(s)	416, 493, 647, 841, 874, 886
HpaII	CCGG	3 cut(s)	30, 42, 757
HphI	GGTGA	2 cut(s)	778, 794
Hpy166II	GTNNAC	4 cut(s)	128, 254, 364, 727
Hpy188I	TCNGA	6 cut(s)	79, 492, 498, 652, 737, 864
Hpy188III	TCNNGA	4 cut(s)	20, 42, 194, 878
Hpy8I	GTNNAC	4 cut(s)	128, 254, 364, 727
Hpy99I	CGWCG	1 cut(s)	114
HpyAV	CCTTC	2 cut(s)	528, 664
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4IV	ACGT	2 cut(s)	729, 820
HpyCH4V	TGCA	7 cut(s)	83, 154, 237, 274, 384, 466, 794
HpySE526I	ACGT	2 cut(s)	729, 820
Hsp92II	CATG	2 cut(s)	388, 691
Kpn2I	TCCGGA	1 cut(s)	41
Ksp22I	TGATCA	1 cut(s)	487
Kzo9I	GATC	6 cut(s)	64, 106, 188, 196, 487, 775
LmnI	GCTCC	1 cut(s)	430
Lsp1109I	GCAGC	3 cut(s)	138, 450, 687
LweI	GCATC	4 cut(s)	70, 163, 246, 855
MaeI	CTAG	2 cut(s)	302, 749
MaeII	ACGT	2 cut(s)	729, 820
MaeIII	GTNAC	3 cut(s)	626, 766, 800
MalI	GATC	6 cut(s)	66, 108, 190, 198, 489, 777
MboI	GATC	6 cut(s)	64, 106, 188, 196, 487, 775
MboII	GAAGA	6 cut(s)	16, 411, 528, 540, 651, 826
MfeI	CAATTG	1 cut(s)	88
MflI	RGATCY	2 cut(s)	188, 196
MluCI	AATT	5 cut(s)	88, 116, 544, 704, 717
MlyI	GAGTC	1 cut(s)	641
MmeI	TCCRAC	1 cut(s)	691
MnlI	CCTC	4 cut(s)	421, 731, 900, 903
MroI	TCCGGA	1 cut(s)	41
MroXI	GAANNNNTTC	1 cut(s)	885
MseI	TTAA	4 cut(s)	215, 476, 716, 720
MspA1I	CMGCKG	2 cut(s)	485, 633
MspI	CCGG	3 cut(s)	30, 42, 757
MspR9I	CCNGG	2 cut(s)	335, 758
MunI	CAATTG	1 cut(s)	88
MvaI	CCWGG	1 cut(s)	335
NciI	CCSGG	1 cut(s)	758
NcoI	CCATGG	1 cut(s)	687
NdeII	GATC	6 cut(s)	64, 106, 188, 196, 487, 775
NlaIII	CATG	2 cut(s)	388, 691
NlaIV	GGNNCC	1 cut(s)	40
NmuCI	GTSAC	2 cut(s)	766, 800
NspI	RCATGY	1 cut(s)	388
NspV	TTCGAA	1 cut(s)	400
PacI	TTAATTAA	1 cut(s)	720
PaeI	GCATGC	1 cut(s)	388
PdmI	GAANNNNTTC	1 cut(s)	885
PfeI	GAWTC	5 cut(s)	416, 493, 841, 874, 886
PfoI	TCCNGGA	1 cut(s)	756
PkrI	GCNGC	4 cut(s)	13, 153, 465, 677
PleI	GAGTC	1 cut(s)	641
PmaCI	CACGTG	1 cut(s)	821
PmlI	CACGTG	1 cut(s)	821
PpsI	GAGTC	1 cut(s)	641
Ppu21I	YACGTR	1 cut(s)	821
PshBI	ATTAAT	1 cut(s)	716
Psp6I	CCWGG	1 cut(s)	333
PspCI	CACGTG	1 cut(s)	821
PspEI	GGTNACC	1 cut(s)	800
PspFI	CCCAGC	1 cut(s)	633
PspGI	CCWGG	1 cut(s)	333
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	1 cut(s)	125
PsuI	RGATCY	2 cut(s)	188, 196
PvuII	CAGCTG	2 cut(s)	485, 633
RsaI	GTAC	1 cut(s)	255
RsaNI	GTAC	1 cut(s)	254
SaqAI	TTAA	4 cut(s)	215, 476, 716, 720
SatI	GCNGC	4 cut(s)	12, 152, 464, 676
Sau3AI	GATC	6 cut(s)	64, 106, 188, 196, 487, 775
Sau96I	GGNCC	1 cut(s)	125
SchI	GAGTC	1 cut(s)	641
ScrFI	CCNGG	2 cut(s)	335, 758
SfaNI	GCATC	4 cut(s)	70, 163, 246, 855
SfcI	CTRYAG	1 cut(s)	423
SfuI	TTCGAA	1 cut(s)	400
SinI	GGWCC	1 cut(s)	125
SphI	GCATGC	1 cut(s)	388
Sse9I	AATT	5 cut(s)	88, 116, 544, 704, 717
SsiI	CCGC	1 cut(s)	663
SspI	AATATT	1 cut(s)	355
SspMI	CTAG	2 cut(s)	302, 749
StyD4I	CCNGG	2 cut(s)	333, 756
StyI	CCWWGG	2 cut(s)	265, 687
TaaI	ACNGT	1 cut(s)	361
TaiI	ACGT	2 cut(s)	732, 823
TaqI	TCGA	3 cut(s)	109, 400, 872
TasI	AATT	5 cut(s)	88, 116, 544, 704, 717
TatI	WGTACW	1 cut(s)	253
TfiI	GAWTC	5 cut(s)	416, 493, 841, 874, 886
Tru1I	TTAA	4 cut(s)	215, 476, 716, 720
Tru9I	TTAA	4 cut(s)	215, 476, 716, 720
TscAI	CASTG	3 cut(s)	300, 816, 852
TseFI	GTSAC	2 cut(s)	766, 800
TseI	GCWGC	4 cut(s)	11, 151, 463, 675
Tsp45I	GTSAC	2 cut(s)	766, 800
TspDTI	ATGAA	6 cut(s)	17, 321, 333, 390, 870, 905
TspRI	CASTG	3 cut(s)	300, 816, 852
VpaK11BI	GGWCC	1 cut(s)	125
VspI	ATTAAT	1 cut(s)	716
XapI	RAATTY	1 cut(s)	704
XceI	RCATGY	1 cut(s)	388
XcmI	CCANNNNNNNNNTGG	2 cut(s)	201, 694
XmnI	GAANNNNTTC	1 cut(s)	885
XspI	CTAG	2 cut(s)	302, 749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.