Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003418.1

Orthogroup ID

OG0004089

Physical Location & Seq

Genomic Coordinates Forward (+)

5053 .. 10505

Gene Structure 5453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003418.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

atggctgcccatcaagaaaattctggcaatgtttccggacaaggttcttgcctatatgatctcttatgttcagatgcacccaattggagaacccaaagtgatcgacggcaattatctggtccacaagaaaggctggaatttttgctgcatcaatctgccaacaagtcctgtgctgattgtggatctccagatccaaaatgggtatctttaaactttggagtatttatttgcatcaagtgttctggtgtacatagaagccttggagtgcatatttcaaaggttgtttcagtgaagctagatgaatggacagatgaacaagttgatggcctggcaagtatgggtggaaatattactgtaaacaagaagtatgaagcttgcatgccacaaaatgttcgaaaaccaaaaccagattcttctatagaggagcgtttttattttattaggagaaaatatgagctgcaagactttttaaacacagctgatcagattcagatgtcctgccctttcccgccttctcataagagacattcttctaccaattcttcaagcattacttatagccaagacaagaaacaatgtgagaagcaaaataccaaaaatcgtatcgggcaggcatttcgtaacagctggggaagaaaagactctgaacacaagtccacaaagaagggcagctcaatgtccatggcaggtatggttgaatttgttggattaattaaagtgaacgtggtcagaggaacaaacctagttgtccgggatgtggtgacaagtgatccttatgttatccttgcattgggtcaccaatcagtgaagacacgtgtaataaagaacaacctgaatccagtgtggaatgaaagtctgatgctgtcgattcctgaacagattcctcctctaaaagtactggtgtatgacaaggatacattcacaactgatgattatatgggtgaggctgagattgacattcagcctctggtcactgctgctgtagcctttgagaagtcttccctcaatgagtcaatgcagctgggaaagtgggtagccagcaaagataacaccctagtaaaagatggtgtcatcaacctaatagatgggaaagtaagacagcacatcgctcttaggctgcagaatgttgagagaggtgtattagagattgagttggaatgtgttcctcttactcaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ArfGap C2

Protein Analysis

392

Amino Acids

43.89

Weight (kDa)

8.24

Isoelectric Point (pI)

50.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07940 AT3G07940
fragaria_vesca	FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820
malus_domestica	MD02G1289600.v1.1 MD07G1037300.v1.1
prunus_persica	Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1
pyrus_communis	pycom02g24520 pycom07g02610
rosa_chinensis	RchiOBHm_Chr1g0323271
rosa_laevigata	RLG00000030341
rosa_multiflora	Rmu_sc0002263.1_g000073 Rmu_sc0003418.1_g000004
rosa_roxburghii	Rroxscaffold_4G00326710
rosa_rugosa	Rorug01G0037200 Rorug01G0037300
rosa_samantha	Rh1AG054500 Rh1BG047400 Rh1CG055700 Rh1DG059600
rosa_wichuraiana	Rw1G004740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	677
AccIII	TCCGGA	1 cut(s)	35
AciI	CCGC	1 cut(s)	509
AclWI	GGATC	3 cut(s)	185, 190, 764
AcsI	RAATTY	3 cut(s)	19, 137, 698
AcvI	CACGTG	1 cut(s)	815
AfaI	GTAC	2 cut(s)	249, 897
AfiI	CCNNNNNNNGG	2 cut(s)	757, 790
AflIII	ACRYGT	2 cut(s)	812, 814
AgsI	TTSAA	3 cut(s)	276, 546, 698
AjnI	CCWGG	1 cut(s)	327
AjuI	GAANNNNNNNTTGG	2 cut(s)	394, 426
AluBI	AGCT	7 cut(s)	295, 374, 457, 479, 627, 672, 1021
AluI	AGCT	7 cut(s)	295, 374, 457, 479, 627, 672, 1021
Alw26I	GTCTC	1 cut(s)	517
AlwI	GGATC	3 cut(s)	185, 190, 764
AlwNI	CAGNNNCTG	1 cut(s)	967
Aor13HI	TCCGGA	1 cut(s)	35
AoxI	GGCC	1 cut(s)	325
ApeKI	GCWGC	7 cut(s)	5, 145, 457, 669, 977, 1018, 1117
ApoI	RAATTY	3 cut(s)	19, 137, 698
AseI	ATTAAT	1 cut(s)	710
Asp700I	GAANNNNTTC	2 cut(s)	879, 1161
AspS9I	GGNCC	1 cut(s)	119
AsuC2I	CCSGG	1 cut(s)	752
AsuHPI	GGTGA	3 cut(s)	772, 788, 953
AsuII	TTCGAA	1 cut(s)	394
AvaII	GGWCC	1 cut(s)	119
BbrPI	CACGTG	1 cut(s)	815
BbsI	GAAGAC	2 cut(s)	815, 990
BbvI	GCAGC	6 cut(s)	132, 444, 681, 964, 1030, 1104
BccI	CCATC	4 cut(s)	18, 317, 1058, 1079
BceAI	ACGGC	1 cut(s)	122
BcgI	CGANNNNNNTGC	2 cut(s)	599, 633
BciT130I	CCWGG	1 cut(s)	329
BciVI	GTATCC	1 cut(s)	907
BclI	TGATCA	1 cut(s)	481
BcnI	CCSGG	1 cut(s)	752
BcoDI	GTCTC	1 cut(s)	517
BfaI	CTAG	3 cut(s)	296, 743, 1055
BfmI	CTRYAG	3 cut(s)	417, 981, 1118
BfuAI	ACCTGC	1 cut(s)	677
BfuI	GTATCC	1 cut(s)	907
BisI	GCNGC	7 cut(s)	6, 146, 458, 670, 978, 1019, 1118
BlsI	GCNGC	7 cut(s)	7, 147, 459, 671, 979, 1020, 1119
BmcAI	AGTACT	1 cut(s)	897
Bme1390I	CCNGG	2 cut(s)	329, 752
Bme18I	GGWCC	1 cut(s)	119
BmgT120I	GGNCC	1 cut(s)	119
BmrFI	CCNGG	2 cut(s)	329, 752
BmsI	GCATC	4 cut(s)	64, 157, 240, 849
BpiI	GAAGAC	2 cut(s)	815, 990
BpmI	CTGGAG	1 cut(s)	171
Bpu14I	TTCGAA	1 cut(s)	394
BpuMI	CCSGG	1 cut(s)	752
BsaAI	YACGTR	1 cut(s)	815
BsaJI	CCNNGG	2 cut(s)	259, 681
BsaWI	WCCGGW	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	2 cut(s)	757, 790
Bse1I	ACTGG	2 cut(s)	839, 903
Bse3DI	GCAATG	1 cut(s)	34
BseAI	TCCGGA	1 cut(s)	35
BseBI	CCWGG	1 cut(s)	329
BseDI	CCNNGG	2 cut(s)	259, 681
BseGI	GGATG	1 cut(s)	760
BseLI	CCNNNNNNNGG	2 cut(s)	757, 790
BseMI	GCAATG	1 cut(s)	34
BseMII	CTCAG	1 cut(s)	939
BseNI	ACTGG	2 cut(s)	839, 903
BseRI	GAGGAG	2 cut(s)	437, 876
BseXI	GCAGC	6 cut(s)	132, 444, 681, 964, 1030, 1104
BseYI	CCCAGC	2 cut(s)	627, 1021
BshFI	GGCC	1 cut(s)	327
BsiSI	CCGG	2 cut(s)	36, 751
BslI	CCNNNNNNNGG	2 cut(s)	757, 790
BsmAI	GTCTC	1 cut(s)	517
BsnI	GGCC	1 cut(s)	327
Bsp119I	TTCGAA	1 cut(s)	394
Bsp13I	TCCGGA	1 cut(s)	35
Bsp1407I	TGTACA	1 cut(s)	247
Bsp143I	GATC	6 cut(s)	58, 100, 182, 190, 481, 769
Bsp19I	CCATGG	1 cut(s)	681
BspACI	CCGC	1 cut(s)	509
BspANI	GGCC	1 cut(s)	327
BspCNI	CTCAG	1 cut(s)	940
BspEI	TCCGGA	1 cut(s)	35
BspMAI	CTGCAG	1 cut(s)	1122
BspMI	ACCTGC	1 cut(s)	677
BspPI	GGATC	3 cut(s)	185, 190, 764
BspT104I	TTCGAA	1 cut(s)	394
BsrDI	GCAATG	1 cut(s)	34
BsrGI	TGTACA	1 cut(s)	247
BsrI	ACTGG	2 cut(s)	839, 903
BssECI	CCNNGG	2 cut(s)	259, 681
BssMI	GATC	6 cut(s)	58, 100, 182, 190, 481, 769
BssT1I	CCWWGG	2 cut(s)	259, 681
Bst2UI	CCWGG	1 cut(s)	329
Bst4CI	ACNGT	1 cut(s)	355
BstAUI	TGTACA	1 cut(s)	247
BstBAI	YACGTR	1 cut(s)	815
BstBI	TTCGAA	1 cut(s)	394
BstC8I	GCNNGC	4 cut(s)	376, 380, 612, 1039
BstDEI	CTNAG	2 cut(s)	948, 1112
BstDSI	CCRYGG	1 cut(s)	681
BstEII	GGTNACC	1 cut(s)	794
BstF5I	GGATG	1 cut(s)	760
BstKTI	GATC	6 cut(s)	61, 103, 185, 193, 484, 772
BstMAI	GTCTC	1 cut(s)	517
BstMBI	GATC	6 cut(s)	58, 100, 182, 190, 481, 769
BstMWI	GCNNNNNNNGC	1 cut(s)	983
BstNI	CCWGG	1 cut(s)	329
BstNSI	RCATGY	1 cut(s)	382
BstPI	GGTNACC	1 cut(s)	794
BstSCI	CCNGG	2 cut(s)	327, 750
BstSFI	CTRYAG	3 cut(s)	417, 981, 1118
BstV1I	GCAGC	6 cut(s)	132, 444, 681, 964, 1030, 1104
BstV2I	GAAGAC	2 cut(s)	815, 990
BstX2I	RGATCY	2 cut(s)	182, 190
BstYI	RGATCY	2 cut(s)	182, 190
BsuI	GTATCC	1 cut(s)	907
BsuRI	GGCC	1 cut(s)	327
BtgI	CCRYGG	1 cut(s)	681
BtgZI	GCGATG	1 cut(s)	1090
BtsCI	GGATG	1 cut(s)	760
BtsI	GCAGTG	1 cut(s)	972
BtsIMutI	CAGTG	4 cut(s)	294, 810, 846, 972
BveI	ACCTGC	1 cut(s)	677
Cac8I	GCNNGC	4 cut(s)	376, 380, 612, 1039
CaiI	CAGNNNCTG	1 cut(s)	967
Cfr13I	GGNCC	1 cut(s)	119
Csp6I	GTAC	2 cut(s)	248, 896
CviAII	CATG	2 cut(s)	379, 682
CviQI	GTAC	2 cut(s)	248, 896
DdeI	CTNAG	2 cut(s)	948, 1112
DpnI	GATC	6 cut(s)	60, 102, 184, 192, 483, 771
DpnII	GATC	6 cut(s)	58, 100, 182, 190, 481, 769
DraI	TTTAAA	2 cut(s)	210, 471
Eco130I	CCWWGG	2 cut(s)	259, 681
Eco47I	GGWCC	1 cut(s)	119
Eco72I	CACGTG	1 cut(s)	815
Eco91I	GGTNACC	1 cut(s)	794
EcoO65I	GGTNACC	1 cut(s)	794
EcoRII	CCWGG	1 cut(s)	327
EcoT14I	CCWWGG	2 cut(s)	259, 681
ErhI	CCWWGG	2 cut(s)	259, 681
FaeI	CATG	2 cut(s)	382, 685
FalI	AAGNNNNNCTT	4 cut(s)	538, 570, 757, 789
FatI	CATG	2 cut(s)	378, 681
FauI	CCCGC	1 cut(s)	516
FbaI	TGATCA	1 cut(s)	481
Fnu4HI	GCNGC	7 cut(s)	6, 146, 458, 670, 978, 1019, 1118
FokI	GGATG	1 cut(s)	767
Fsp4HI	GCNGC	7 cut(s)	6, 146, 458, 670, 978, 1019, 1118
FspBI	CTAG	3 cut(s)	296, 743, 1055
GluI	GCNGC	7 cut(s)	6, 146, 458, 670, 978, 1019, 1118
GsaI	CCCAGC	2 cut(s)	631, 1025
GsuI	CTGGAG	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	327
HapII	CCGG	2 cut(s)	36, 751
Hin1II	CATG	2 cut(s)	382, 685
HindIII	AAGCTT	1 cut(s)	372
HinfI	GANTC	7 cut(s)	410, 487, 641, 835, 868, 880, 1010
HpaII	CCGG	2 cut(s)	36, 751
HphI	GGTGA	3 cut(s)	772, 788, 953
Hpy166II	GTNNAC	5 cut(s)	122, 248, 358, 657, 721
Hpy188I	TCNGA	6 cut(s)	73, 486, 492, 646, 731, 858
Hpy188III	TCNNGA	4 cut(s)	14, 36, 188, 872
Hpy8I	GTNNAC	5 cut(s)	122, 248, 358, 657, 721
Hpy99I	CGWCG	1 cut(s)	108
HpyAV	CCTTC	2 cut(s)	522, 658
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4IV	ACGT	2 cut(s)	723, 814
HpyCH4V	TGCA	9 cut(s)	77, 148, 231, 268, 378, 460, 788, 1018, 1120
HpyF10VI	GCNNNNNNNGC	1 cut(s)	983
HpyF3I	CTNAG	2 cut(s)	948, 1112
HpySE526I	ACGT	2 cut(s)	723, 814
Hsp92II	CATG	2 cut(s)	382, 685
Kpn2I	TCCGGA	1 cut(s)	35
Ksp22I	TGATCA	1 cut(s)	481
Kzo9I	GATC	6 cut(s)	58, 100, 182, 190, 481, 769
LmnI	GCTCC	1 cut(s)	424
Lsp1109I	GCAGC	6 cut(s)	132, 444, 681, 964, 1030, 1104
LweI	GCATC	4 cut(s)	64, 157, 240, 849
MaeI	CTAG	3 cut(s)	296, 743, 1055
MaeII	ACGT	2 cut(s)	723, 814
MaeIII	GTNAC	4 cut(s)	620, 760, 794, 970
MalI	GATC	6 cut(s)	60, 102, 184, 192, 483, 771
MboI	GATC	6 cut(s)	58, 100, 182, 190, 481, 769
MboII	GAAGA	6 cut(s)	405, 522, 534, 645, 820, 990
MfeI	CAATTG	1 cut(s)	82
MflI	RGATCY	2 cut(s)	182, 190
MluCI	AATT	7 cut(s)	19, 82, 110, 137, 538, 698, 711
MlyI	GAGTC	2 cut(s)	635, 1019
MmeI	TCCRAC	2 cut(s)	685, 1134
MnlI	CCTC	9 cut(s)	415, 725, 894, 897, 937, 975, 1013, 1127, 1176
MroI	TCCGGA	1 cut(s)	35
MroXI	GAANNNNTTC	2 cut(s)	879, 1161
MseI	TTAA	4 cut(s)	209, 470, 710, 714
MspA1I	CMGCKG	3 cut(s)	479, 627, 1021
MspI	CCGG	2 cut(s)	36, 751
MspR9I	CCNGG	2 cut(s)	329, 752
MunI	CAATTG	1 cut(s)	82
MvaI	CCWGG	1 cut(s)	329
MwoI	GCNNNNNNNGC	1 cut(s)	983
NciI	CCSGG	1 cut(s)	752
NcoI	CCATGG	1 cut(s)	681
NdeII	GATC	6 cut(s)	58, 100, 182, 190, 481, 769
NlaIII	CATG	2 cut(s)	382, 685
NmuCI	GTSAC	3 cut(s)	760, 794, 970
NspI	RCATGY	1 cut(s)	382
NspV	TTCGAA	1 cut(s)	394
PacI	TTAATTAA	1 cut(s)	714
PaeI	GCATGC	1 cut(s)	382
PdmI	GAANNNNTTC	2 cut(s)	879, 1161
PfeI	GAWTC	5 cut(s)	410, 487, 835, 868, 880
PfoI	TCCNGGA	1 cut(s)	750
PkrI	GCNGC	7 cut(s)	7, 147, 459, 671, 979, 1020, 1119
PleI	GAGTC	2 cut(s)	635, 1018
PmaCI	CACGTG	1 cut(s)	815
PmlI	CACGTG	1 cut(s)	815
PpsI	GAGTC	2 cut(s)	635, 1018
Ppu21I	YACGTR	1 cut(s)	815
PshBI	ATTAAT	1 cut(s)	710
Psp6I	CCWGG	1 cut(s)	327
PspCI	CACGTG	1 cut(s)	815
PspEI	GGTNACC	1 cut(s)	794
PspFI	CCCAGC	2 cut(s)	627, 1021
PspGI	CCWGG	1 cut(s)	327
PspPI	GGNCC	1 cut(s)	119
PstI	CTGCAG	1 cut(s)	1122
PstNI	CAGNNNCTG	1 cut(s)	967
PsuI	RGATCY	2 cut(s)	182, 190
PvuII	CAGCTG	3 cut(s)	479, 627, 1021
RsaI	GTAC	2 cut(s)	249, 897
RsaNI	GTAC	2 cut(s)	248, 896
SaqAI	TTAA	4 cut(s)	209, 470, 710, 714
SatI	GCNGC	7 cut(s)	6, 146, 458, 670, 978, 1019, 1118
Sau3AI	GATC	6 cut(s)	58, 100, 182, 190, 481, 769
Sau96I	GGNCC	1 cut(s)	119
ScaI	AGTACT	1 cut(s)	897
SchI	GAGTC	2 cut(s)	635, 1019
ScrFI	CCNGG	2 cut(s)	329, 752
SfaNI	GCATC	4 cut(s)	64, 157, 240, 849
SfcI	CTRYAG	3 cut(s)	417, 981, 1118
SfuI	TTCGAA	1 cut(s)	394
SinI	GGWCC	1 cut(s)	119
SphI	GCATGC	1 cut(s)	382
Sse9I	AATT	7 cut(s)	19, 82, 110, 137, 538, 698, 711
SsiI	CCGC	1 cut(s)	509
SspI	AATATT	1 cut(s)	349
SspMI	CTAG	3 cut(s)	296, 743, 1055
StyD4I	CCNGG	2 cut(s)	327, 750
StyI	CCWWGG	2 cut(s)	259, 681
TaaI	ACNGT	1 cut(s)	355
TaiI	ACGT	2 cut(s)	726, 817
TaqI	TCGA	3 cut(s)	103, 394, 866
TasI	AATT	7 cut(s)	19, 82, 110, 137, 538, 698, 711
TatI	WGTACW	2 cut(s)	247, 895
TfiI	GAWTC	5 cut(s)	410, 487, 835, 868, 880
Tru1I	TTAA	4 cut(s)	209, 470, 710, 714
Tru9I	TTAA	4 cut(s)	209, 470, 710, 714
TscAI	CASTG	4 cut(s)	294, 810, 846, 979
TseFI	GTSAC	3 cut(s)	760, 794, 970
TseI	GCWGC	7 cut(s)	5, 145, 457, 669, 977, 1018, 1117
Tsp45I	GTSAC	3 cut(s)	760, 794, 970
TspDTI	ATGAA	4 cut(s)	315, 327, 384, 864
TspRI	CASTG	4 cut(s)	294, 810, 846, 979
VpaK11BI	GGWCC	1 cut(s)	119
VspI	ATTAAT	1 cut(s)	710
XapI	RAATTY	3 cut(s)	19, 137, 698
XceI	RCATGY	1 cut(s)	382
XcmI	CCANNNNNNNNNTGG	2 cut(s)	195, 688
XmnI	GAANNNNTTC	2 cut(s)	879, 1161
XspI	CTAG	3 cut(s)	296, 743, 1055
ZrmI	AGTACT	1 cut(s)	897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.