Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002263.1

Orthogroup ID

OG0004089

Physical Location & Seq

Genomic Coordinates Forward (+)

275370 .. 281730

Gene Structure 6361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002263.1_g000073.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

atgaggtgccccacccatgcacacacaaaccaccggcctgaggctccgtcgtttggactcgccaccaagccatccaggcccaaatcccgagccaaaatcttctccaagaagctcccaggcatatttagaatccccgtccggcagcagccctcaccggcgaggcgaaccaccgccgacaaagagcgccaccggatgagaacaagtccacaagaaaggctggagtttttgctgcatcaatctgccaacaagtcctgtgctgattgtggatctccagatccaaaatgggtatctttaaactttggagtatttatttgcatcaagtgttctggggtacatagaagccttggagtgcatatttcaaaggttgtttcagtgaagctagatgaatggacagatgaacaagttgatggcctggcaagtatgggtggaaatattactgtaaacaagaagtatgaagcttgcatgccacaaaatgttcgaaaaccaaaaccagattcttctatagaggagcgtttttattttattaggagaaaatatgagctgcaagactttttaaacacagctgatcagattcagatgtcctgtcctttcccgccttctcataagagacattcttctaccaattcttcaagcattacttatagccaagacaagaaacaatgtgagaagcaaaataccaaaaatcgtatcgggcaggcatttcgtaacagctggggaagaaaagactctgaacacaagtccacaaagaagggcagctcaatgtccatggcaggtatggttgaatttgttggattaattaaagtgaacgtggtcagaggaacaaacctagttgtccgggatgtggtgacaagtgatccttatgttatccttgcattgggtcaccaatcagtgaagacacgtgtgataaagaacaatctgaatccagtgtggaatgaaagcctgatgctgtcaattcctgaacagattcctcctctaaaagtactggtgtatgacaaggatacattcacaactgatgattatatgggtgaggctgagattgacattcagcctctggtcactgctgctgtagcctttgagaagtcttcgctcaatgagtcaatgcagctgggaaagtgggtagccagcaaagataacaccctagtaaaagacggagtcatcaacctaatagatgggaaagtaagacagcacatcgctcttaggctgcagaatgttgagagaggtgtattagagattgagttggaatgtgttcctcttactcaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ArfGap C2

Protein Analysis

420

Amino Acids

47.35

Weight (kDa)

9.5

Isoelectric Point (pI)

52.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07940 AT3G07940
fragaria_vesca	FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820
malus_domestica	MD02G1289600.v1.1 MD07G1037300.v1.1
prunus_persica	Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1
pyrus_communis	pycom02g24520 pycom07g02610
rosa_chinensis	RchiOBHm_Chr1g0323271
rosa_laevigata	RLG00000030341
rosa_multiflora	Rmu_sc0002263.1_g000073 Rmu_sc0003418.1_g000004
rosa_roxburghii	Rroxscaffold_4G00326710
rosa_rugosa	Rorug01G0037200 Rorug01G0037300
rosa_samantha	Rh1AG054500 Rh1BG047400 Rh1CG055700 Rh1DG059600
rosa_wichuraiana	Rw1G004740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	761
AccB1I	GGYRCC	1 cut(s)	6
AciI	CCGC	2 cut(s)	171, 593
AclWI	GGATC	3 cut(s)	269, 274, 848
AcsI	RAATTY	1 cut(s)	782
AcvI	CACGTG	1 cut(s)	899
AfaI	GTAC	2 cut(s)	333, 981
AfiI	CCNNNNNNNGG	4 cut(s)	40, 53, 841, 874
AflIII	ACRYGT	2 cut(s)	896, 898
AgsI	TTSAA	3 cut(s)	360, 630, 782
AjnI	CCWGG	3 cut(s)	74, 115, 411
AjuI	GAANNNNNNNTTGG	2 cut(s)	478, 510
AluBI	AGCT	8 cut(s)	112, 379, 458, 541, 563, 711, 756, 1105
AluI	AGCT	8 cut(s)	112, 379, 458, 541, 563, 711, 756, 1105
Alw26I	GTCTC	1 cut(s)	601
AlwI	GGATC	3 cut(s)	269, 274, 848
AlwNI	CAGNNNCTG	1 cut(s)	1051
Ama87I	CYCGRG	1 cut(s)	87
AoxI	GGCC	3 cut(s)	35, 77, 409
ApeKI	GCWGC	8 cut(s)	142, 145, 229, 541, 753, 1061, 1102, 1201
ApoI	RAATTY	1 cut(s)	782
AseI	ATTAAT	1 cut(s)	794
Asp700I	GAANNNNTTC	2 cut(s)	963, 1245
AspLEI	GCGC	1 cut(s)	186
AspS9I	GGNCC	1 cut(s)	78
AsuC2I	CCSGG	1 cut(s)	836
AsuHPI	GGTGA	4 cut(s)	144, 856, 872, 1037
AsuII	TTCGAA	1 cut(s)	478
AvaI	CYCGRG	1 cut(s)	87
AxyI	CCTNAGG	1 cut(s)	39
BaeGI	GKGCMC	1 cut(s)	11
BanI	GGYRCC	1 cut(s)	6
BbrPI	CACGTG	1 cut(s)	899
BbsI	GAAGAC	2 cut(s)	899, 1074
BbvI	GCAGC	8 cut(s)	154, 157, 216, 528, 765, 1048, 1114, 1188
BccI	CCATC	3 cut(s)	79, 401, 1163
BcgI	CGANNNNNNTGC	2 cut(s)	683, 717
BciT130I	CCWGG	3 cut(s)	76, 117, 413
BciVI	GTATCC	1 cut(s)	991
BclI	TGATCA	1 cut(s)	565
BcnI	CCSGG	1 cut(s)	836
BcoDI	GTCTC	1 cut(s)	601
BfaI	CTAG	3 cut(s)	380, 827, 1139
BfmI	CTRYAG	3 cut(s)	501, 1065, 1202
BfoI	RGCGCY	1 cut(s)	187
BfuAI	ACCTGC	1 cut(s)	761
BfuI	GTATCC	1 cut(s)	991
BglI	GCCNNNNNGGC	1 cut(s)	76
BisI	GCNGC	8 cut(s)	143, 146, 230, 542, 754, 1062, 1103, 1202
BlsI	GCNGC	8 cut(s)	144, 147, 231, 543, 755, 1063, 1104, 1203
BmcAI	AGTACT	1 cut(s)	981
Bme1390I	CCNGG	4 cut(s)	76, 117, 413, 836
BmeT110I	CYCGRG	1 cut(s)	87
BmgT120I	GGNCC	1 cut(s)	78
BmiI	GGNNCC	2 cut(s)	8, 45
BmrFI	CCNGG	4 cut(s)	76, 117, 413, 836
BmsI	GCATC	3 cut(s)	241, 324, 933
BpiI	GAAGAC	2 cut(s)	899, 1074
BpmI	CTGGAG	2 cut(s)	239, 255
Bpu14I	TTCGAA	1 cut(s)	478
BpuMI	CCSGG	1 cut(s)	836
BsaAI	YACGTR	1 cut(s)	899
BsaJI	CCNNGG	3 cut(s)	115, 343, 765
BsaWI	WCCGGW	1 cut(s)	189
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 53, 841, 874
Bse118I	RCCGGY	2 cut(s)	33, 154
Bse1I	ACTGG	2 cut(s)	923, 987
Bse21I	CCTNAGG	1 cut(s)	39
BseBI	CCWGG	3 cut(s)	76, 117, 413
BseDI	CCNNGG	3 cut(s)	115, 343, 765
BseGI	GGATG	3 cut(s)	71, 198, 844
BseLI	CCNNNNNNNGG	4 cut(s)	40, 53, 841, 874
BseMII	CTCAG	2 cut(s)	30, 1023
BseNI	ACTGG	2 cut(s)	923, 987
BseRI	GAGGAG	2 cut(s)	521, 960
BseSI	GKGCMC	1 cut(s)	11
BseXI	GCAGC	8 cut(s)	154, 157, 216, 528, 765, 1048, 1114, 1188
BseYI	CCCAGC	2 cut(s)	711, 1105
BshFI	GGCC	3 cut(s)	37, 79, 411
BshNI	GGYRCC	1 cut(s)	6
BsiHKCI	CYCGRG	1 cut(s)	87
BsiSI	CCGG	5 cut(s)	34, 139, 155, 190, 835
BslI	CCNNNNNNNGG	4 cut(s)	40, 53, 841, 874
BsmAI	GTCTC	1 cut(s)	601
BsnI	GGCC	3 cut(s)	37, 79, 411
BsoBI	CYCGRG	1 cut(s)	87
Bsp119I	TTCGAA	1 cut(s)	478
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	4 cut(s)	266, 274, 565, 853
Bsp19I	CCATGG	1 cut(s)	765
BspACI	CCGC	2 cut(s)	171, 593
BspANI	GGCC	3 cut(s)	37, 79, 411
BspCNI	CTCAG	2 cut(s)	31, 1024
BspLI	GGNNCC	2 cut(s)	8, 45
BspMAI	CTGCAG	1 cut(s)	1206
BspMI	ACCTGC	1 cut(s)	761
BspPI	GGATC	3 cut(s)	269, 274, 848
BspT104I	TTCGAA	1 cut(s)	478
BspT107I	GGYRCC	1 cut(s)	6
BsrFI	RCCGGY	2 cut(s)	33, 154
BsrI	ACTGG	2 cut(s)	923, 987
BssAI	RCCGGY	2 cut(s)	33, 154
BssECI	CCNNGG	3 cut(s)	115, 343, 765
BssMI	GATC	4 cut(s)	266, 274, 565, 853
BssT1I	CCWWGG	2 cut(s)	343, 765
Bst2UI	CCWGG	3 cut(s)	76, 117, 413
Bst4CI	ACNGT	1 cut(s)	439
BstBAI	YACGTR	1 cut(s)	899
BstBI	TTCGAA	1 cut(s)	478
BstC8I	GCNNGC	4 cut(s)	460, 464, 696, 1123
BstDEI	CTNAG	3 cut(s)	39, 1032, 1196
BstDSI	CCRYGG	1 cut(s)	765
BstEII	GGTNACC	1 cut(s)	878
BstF5I	GGATG	3 cut(s)	71, 198, 844
BstH2I	RGCGCY	1 cut(s)	187
BstHHI	GCGC	1 cut(s)	186
BstKTI	GATC	4 cut(s)	269, 277, 568, 856
BstMAI	GTCTC	1 cut(s)	601
BstMBI	GATC	4 cut(s)	266, 274, 565, 853
BstMWI	GCNNNNNNNGC	2 cut(s)	76, 1067
BstNI	CCWGG	3 cut(s)	76, 117, 413
BstNSI	RCATGY	1 cut(s)	466
BstPI	GGTNACC	1 cut(s)	878
BstSCI	CCNGG	4 cut(s)	74, 115, 411, 834
BstSFI	CTRYAG	3 cut(s)	501, 1065, 1202
BstSLI	GKGCMC	1 cut(s)	11
BstV1I	GCAGC	8 cut(s)	154, 157, 216, 528, 765, 1048, 1114, 1188
BstV2I	GAAGAC	2 cut(s)	899, 1074
BstX2I	RGATCY	2 cut(s)	266, 274
BstYI	RGATCY	2 cut(s)	266, 274
Bsu36I	CCTNAGG	1 cut(s)	39
BsuI	GTATCC	1 cut(s)	991
BsuRI	GGCC	3 cut(s)	37, 79, 411
BtgI	CCRYGG	1 cut(s)	765
BtgZI	GCGATG	1 cut(s)	1174
BtsCI	GGATG	3 cut(s)	71, 198, 844
BtsI	GCAGTG	1 cut(s)	1056
BtsIMutI	CAGTG	4 cut(s)	378, 894, 930, 1056
BveI	ACCTGC	1 cut(s)	761
Cac8I	GCNNGC	4 cut(s)	460, 464, 696, 1123
CaiI	CAGNNNCTG	1 cut(s)	1051
CfoI	GCGC	1 cut(s)	186
Cfr10I	RCCGGY	2 cut(s)	33, 154
Cfr13I	GGNCC	1 cut(s)	78
Csp6I	GTAC	2 cut(s)	332, 980
CviAII	CATG	3 cut(s)	17, 463, 766
CviQI	GTAC	2 cut(s)	332, 980
DdeI	CTNAG	3 cut(s)	39, 1032, 1196
DpnI	GATC	4 cut(s)	268, 276, 567, 855
DpnII	GATC	4 cut(s)	266, 274, 565, 853
DraI	TTTAAA	2 cut(s)	294, 555
Eco130I	CCWWGG	2 cut(s)	343, 765
Eco72I	CACGTG	1 cut(s)	899
Eco81I	CCTNAGG	1 cut(s)	39
Eco88I	CYCGRG	1 cut(s)	87
Eco91I	GGTNACC	1 cut(s)	878
EcoO65I	GGTNACC	1 cut(s)	878
EcoRII	CCWGG	3 cut(s)	74, 115, 411
EcoT14I	CCWWGG	2 cut(s)	343, 765
ErhI	CCWWGG	2 cut(s)	343, 765
FaeI	CATG	3 cut(s)	20, 466, 769
FalI	AAGNNNNNCTT	4 cut(s)	622, 654, 841, 873
FatI	CATG	3 cut(s)	16, 462, 765
FauI	CCCGC	1 cut(s)	600
FbaI	TGATCA	1 cut(s)	565
Fnu4HI	GCNGC	8 cut(s)	143, 146, 230, 542, 754, 1062, 1103, 1202
FokI	GGATG	3 cut(s)	58, 205, 851
Fsp4HI	GCNGC	8 cut(s)	143, 146, 230, 542, 754, 1062, 1103, 1202
FspBI	CTAG	3 cut(s)	380, 827, 1139
GlaI	GCGC	1 cut(s)	185
GluI	GCNGC	8 cut(s)	143, 146, 230, 542, 754, 1062, 1103, 1202
GsaI	CCCAGC	2 cut(s)	715, 1109
GsuI	CTGGAG	2 cut(s)	239, 255
HaeII	RGCGCY	1 cut(s)	187
HaeIII	GGCC	3 cut(s)	37, 79, 411
HapII	CCGG	5 cut(s)	34, 139, 155, 190, 835
HhaI	GCGC	1 cut(s)	186
Hin1II	CATG	3 cut(s)	20, 466, 769
Hin6I	GCGC	1 cut(s)	184
HinP1I	GCGC	1 cut(s)	184
HindIII	AAGCTT	1 cut(s)	456
HinfI	GANTC	9 cut(s)	57, 129, 494, 571, 725, 919, 964, 1094, 1152
HpaII	CCGG	5 cut(s)	34, 139, 155, 190, 835
HphI	GGTGA	4 cut(s)	144, 856, 872, 1037
Hpy166II	GTNNAC	4 cut(s)	206, 442, 741, 805
Hpy188I	TCNGA	5 cut(s)	570, 576, 730, 815, 918
Hpy188III	TCNNGA	3 cut(s)	87, 272, 956
Hpy8I	GTNNAC	4 cut(s)	206, 442, 741, 805
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	2 cut(s)	606, 742
HpyCH4III	ACNGT	1 cut(s)	439
HpyCH4IV	ACGT	2 cut(s)	807, 898
HpyCH4V	TGCA	9 cut(s)	20, 232, 315, 352, 462, 544, 872, 1102, 1204
HpyF10VI	GCNNNNNNNGC	2 cut(s)	76, 1067
HpyF3I	CTNAG	3 cut(s)	39, 1032, 1196
HpySE526I	ACGT	2 cut(s)	807, 898
Hsp92II	CATG	3 cut(s)	20, 466, 769
HspAI	GCGC	1 cut(s)	184
Ksp22I	TGATCA	1 cut(s)	565
Kzo9I	GATC	4 cut(s)	266, 274, 565, 853
LmnI	GCTCC	3 cut(s)	49, 117, 508
Lsp1109I	GCAGC	8 cut(s)	154, 157, 216, 528, 765, 1048, 1114, 1188
LweI	GCATC	3 cut(s)	241, 324, 933
MaeI	CTAG	3 cut(s)	380, 827, 1139
MaeII	ACGT	2 cut(s)	807, 898
MaeIII	GTNAC	4 cut(s)	704, 844, 878, 1054
MalI	GATC	4 cut(s)	268, 276, 567, 855
MboI	GATC	4 cut(s)	266, 274, 565, 853
MboII	GAAGA	7 cut(s)	91, 489, 606, 618, 729, 904, 1074
MflI	RGATCY	2 cut(s)	266, 274
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	4 cut(s)	622, 782, 795, 951
MlyI	GAGTC	4 cut(s)	51, 719, 1103, 1161
MmeI	TCCRAC	2 cut(s)	769, 1218
MroXI	GAANNNNTTC	2 cut(s)	963, 1245
MseI	TTAA	4 cut(s)	293, 554, 794, 798
MspA1I	CMGCKG	3 cut(s)	563, 711, 1105
MspI	CCGG	5 cut(s)	34, 139, 155, 190, 835
MspR9I	CCNGG	4 cut(s)	76, 117, 413, 836
MvaI	CCWGG	3 cut(s)	76, 117, 413
MwoI	GCNNNNNNNGC	2 cut(s)	76, 1067
NciI	CCSGG	1 cut(s)	836
NcoI	CCATGG	1 cut(s)	765
NdeII	GATC	4 cut(s)	266, 274, 565, 853
NlaIII	CATG	3 cut(s)	20, 466, 769
NlaIV	GGNNCC	2 cut(s)	8, 45
NmuCI	GTSAC	3 cut(s)	844, 878, 1054
NspI	RCATGY	1 cut(s)	466
NspV	TTCGAA	1 cut(s)	478
PacI	TTAATTAA	1 cut(s)	798
PaeI	GCATGC	1 cut(s)	466
PdmI	GAANNNNTTC	2 cut(s)	963, 1245
PfeI	GAWTC	5 cut(s)	129, 494, 571, 919, 964
PflFI	GACNNNGTC	1 cut(s)	1151
PfoI	TCCNGGA	1 cut(s)	834
PkrI	GCNGC	8 cut(s)	144, 147, 231, 543, 755, 1063, 1104, 1203
PleI	GAGTC	4 cut(s)	51, 719, 1102, 1160
PmaCI	CACGTG	1 cut(s)	899
PmlI	CACGTG	1 cut(s)	899
PpsI	GAGTC	4 cut(s)	51, 719, 1102, 1160
Ppu21I	YACGTR	1 cut(s)	899
PshBI	ATTAAT	1 cut(s)	794
Psp6I	CCWGG	3 cut(s)	74, 115, 411
PspCI	CACGTG	1 cut(s)	899
PspEI	GGTNACC	1 cut(s)	878
PspFI	CCCAGC	2 cut(s)	711, 1105
PspGI	CCWGG	3 cut(s)	74, 115, 411
PspN4I	GGNNCC	2 cut(s)	8, 45
PspPI	GGNCC	1 cut(s)	78
PstI	CTGCAG	1 cut(s)	1206
PstNI	CAGNNNCTG	1 cut(s)	1051
PsuI	RGATCY	2 cut(s)	266, 274
PsyI	GACNNNGTC	1 cut(s)	1151
PvuII	CAGCTG	3 cut(s)	563, 711, 1105
RsaI	GTAC	2 cut(s)	333, 981
RsaNI	GTAC	2 cut(s)	332, 980
SaqAI	TTAA	4 cut(s)	293, 554, 794, 798
SatI	GCNGC	8 cut(s)	143, 146, 230, 542, 754, 1062, 1103, 1202
Sau3AI	GATC	4 cut(s)	266, 274, 565, 853
Sau96I	GGNCC	1 cut(s)	78
ScaI	AGTACT	1 cut(s)	981
SchI	GAGTC	4 cut(s)	51, 719, 1103, 1161
ScrFI	CCNGG	4 cut(s)	76, 117, 413, 836
SduI	GDGCHC	1 cut(s)	11
SfaNI	GCATC	3 cut(s)	241, 324, 933
SfcI	CTRYAG	3 cut(s)	501, 1065, 1202
SfuI	TTCGAA	1 cut(s)	478
SgrAI	CRCCGGYG	1 cut(s)	154
SphI	GCATGC	1 cut(s)	466
Sse9I	AATT	4 cut(s)	622, 782, 795, 951
SsiI	CCGC	2 cut(s)	171, 593
SspI	AATATT	1 cut(s)	433
SspMI	CTAG	3 cut(s)	380, 827, 1139
StyD4I	CCNGG	4 cut(s)	74, 115, 411, 834
StyI	CCWWGG	2 cut(s)	343, 765
TaaI	ACNGT	1 cut(s)	439
TaiI	ACGT	2 cut(s)	810, 901
TaqI	TCGA	1 cut(s)	478
TasI	AATT	4 cut(s)	622, 782, 795, 951
TatI	WGTACW	1 cut(s)	979
TfiI	GAWTC	5 cut(s)	129, 494, 571, 919, 964
Tru1I	TTAA	4 cut(s)	293, 554, 794, 798
Tru9I	TTAA	4 cut(s)	293, 554, 794, 798
TscAI	CASTG	4 cut(s)	378, 894, 930, 1063
TseFI	GTSAC	3 cut(s)	844, 878, 1054
TseI	GCWGC	8 cut(s)	142, 145, 229, 541, 753, 1061, 1102, 1201
Tsp45I	GTSAC	3 cut(s)	844, 878, 1054
TspDTI	ATGAA	4 cut(s)	399, 411, 468, 948
TspGWI	ACGGA	2 cut(s)	36, 1164
TspRI	CASTG	4 cut(s)	378, 894, 930, 1063
Tth111I	GACNNNGTC	1 cut(s)	1151
VspI	ATTAAT	1 cut(s)	794
XapI	RAATTY	1 cut(s)	782
XceI	RCATGY	1 cut(s)	466
XcmI	CCANNNNNNNNNTGG	2 cut(s)	279, 772
XmnI	GAANNNNTTC	2 cut(s)	963, 1245
XspI	CTAG	3 cut(s)	380, 827, 1139
ZrmI	AGTACT	1 cut(s)	981

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.