Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0004089

Physical Location & Seq

Genomic Coordinates Forward (+)

3071312 .. 3076416

Gene Structure 5105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1037300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGAGATGTCTACCCAGCAAGATAATTCTGTTCCCAACAAAGTTTCAGGATCAGGTTCTTGCCTGTATGATCTCTTATGTTCAGACGCACCGGCTTGGAGATGCCCTAGTGACCAACGGTCATTATCTGGTCCACAAGAAAGGCTGGAGATTTTGTTGCGCCAATCTGCCAACAGGTCCTGTGCAGATTGTGGAGCTCTAGATCCAAAATGGGTATCTTTAAGCTTCGGAGTATTTATTTGTATAAAGTGTTCTGGTGTACATAGAAGCCTTGGAGTGCATATTTCGAAGGTTGTATCAGTGAAGCTAGATGAATGGTCAGACGATGAAGTTGATATCTTGGCAAGTATGGGAGGAAATACTACTGTAAACAAGAAGTATGAGGCTTGCTTGCCGGAAAATTTCTGTAAACCAAAACCAGATTCTTCTATAGAGGAGCGCTTTTATTTTATAAGGAGAAAATATGAGCTGCTAGACTTCTTGAACCCCAATGAACCGTTGTCATGTCCTTTTCCACCTAATAAGAAATCACCTCCTAGCAATTCAACTATTAGTTCTACCCAAGATAAGAAACAGTATGAGAAACAACCAACGAAAAACCGTATTGGGCAGGCATTTCGTAACAGCTGGGGAAGAAAAGACTCTGAACATAAGACCGCAAAGAAGGGCTACTCAATGCCAATGGCAGGTATGATCGAATTTGTTGGATTAATCAAGGTGAATGTGGTTAAAGGAACCAACCTAGTTGTACGGGATATGATGACAAGTGACCCTTACGTCATCCTTGCATTGGGTCACCAATCAGTGAAGACGCGTGTCATAAAGAACAATCTTAATCCCGTATGGAATGAGAGCCTGATGCTGTCAATTCCTGATCACATACCTCCTCTAAAAGTGCTGGTGTATGACAAAGATACGTTCAAAGCTGATGATTATATGGGTGAAGCCGAGATTGATATTCAACCTCTGGTGAGTGCTGCTATAGCTTATGAGAAATCCACGATCAATGAACCAATGCAGCTTGGAAAGTGGGTAGCCAGCAAAGAAAACACACTCGTAAAAGATGGTGTCATCAACCTCGTAGACGGGAGAGTAAGACAGCAGATCTCTCTCAGGCTGCAGAATGTTGAGAGGGGTATACTGGAGATTGAGCTTGAATGTGTGCCTCTTAATCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ArfGap C2

Protein Analysis

393

Amino Acids

43.92

Weight (kDa)

7.47

Isoelectric Point (pI)

49.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArfGap	PF01412	47 - 161	5.9e-36	Putative GTPase activating protein for Arf
C2	PF00168	237 - 325	1.9e-23	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07940 AT3G07940
fragaria_vesca	FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820
malus_domestica	MD02G1289600.v1.1 MD07G1037300.v1.1
prunus_persica	Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1
pyrus_communis	pycom02g24520 pycom07g02610
rosa_chinensis	RchiOBHm_Chr1g0323271
rosa_laevigata	RLG00000030341
rosa_multiflora	Rmu_sc0002263.1_g000073 Rmu_sc0003418.1_g000004
rosa_roxburghii	Rroxscaffold_4G00326710
rosa_rugosa	Rorug01G0037200 Rorug01G0037300
rosa_samantha	Rh1AG054500 Rh1BG047400 Rh1CG055700 Rh1DG059600
rosa_wichuraiana	Rw1G004740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	452
AasI	GACNNNNNNGTC	1 cut(s)	776
Acc36I	ACCTGC	1 cut(s)	677
AccI	GTMKAC	3 cut(s)	11, 1083, 1138
AccII	CGCG	1 cut(s)	814
AciI	CCGC	1 cut(s)	657
AclWI	GGATC	2 cut(s)	58, 197
AcsI	RAATTY	2 cut(s)	400, 698
AfaI	GTAC	2 cut(s)	261, 750
AfeI	AGCGCT	1 cut(s)	440
AfiI	CCNNNNNNNGG	2 cut(s)	686, 790
AflIII	ACRYGT	1 cut(s)	812
AgsI	TTSAA	5 cut(s)	484, 546, 922, 962, 1157
AhdI	GACNNNNNGTC	1 cut(s)	118
AjuI	GAANNNNNNNTTGG	2 cut(s)	406, 438
AluBI	AGCT	9 cut(s)	197, 225, 307, 469, 627, 926, 986, 1021, 1153
AluI	AGCT	9 cut(s)	197, 225, 307, 469, 627, 926, 986, 1021, 1153
Alw21I	GWGCWC	1 cut(s)	199
AlwI	GGATC	2 cut(s)	58, 197
AlwNI	CAGNNNCTG	1 cut(s)	180
Aor51HI	AGCGCT	1 cut(s)	440
ApeKI	GCWGC	4 cut(s)	469, 977, 1018, 1117
ApoI	RAATTY	2 cut(s)	400, 698
AseI	ATTAAT	1 cut(s)	710
AspLEI	GCGC	2 cut(s)	162, 441
AspS9I	GGNCC	2 cut(s)	131, 177
AsuHPI	GGTGA	5 cut(s)	522, 730, 788, 953, 982
AsuII	TTCGAA	1 cut(s)	287
AvaII	GGWCC	2 cut(s)	131, 177
BanII	GRGCYC	1 cut(s)	199
BbsI	GAAGAC	1 cut(s)	815
Bbv12I	GWGCWC	1 cut(s)	199
BbvI	GCAGC	4 cut(s)	456, 964, 1030, 1104
BccI	CCATC	1 cut(s)	1058
BcgI	CGANNNNNNTGC	2 cut(s)	599, 633
BclI	TGATCA	1 cut(s)	874
BfaI	CTAG	6 cut(s)	108, 200, 308, 473, 537, 743
BfmI	CTRYAG	3 cut(s)	429, 981, 1118
BfoI	RGCGCY	1 cut(s)	442
BfuAI	ACCTGC	1 cut(s)	677
BglII	AGATCT	1 cut(s)	1104
BisI	GCNGC	4 cut(s)	470, 978, 1019, 1118
BlsI	GCNGC	4 cut(s)	471, 979, 1020, 1119
Bme18I	GGWCC	2 cut(s)	131, 177
BmeRI	GACNNNNNGTC	1 cut(s)	118
BmgT120I	GGNCC	2 cut(s)	131, 177
BmiI	GGNNCC	1 cut(s)	736
BmsI	GCATC	2 cut(s)	92, 849
BoxI	GACNNNNGTC	1 cut(s)	815
BpiI	GAAGAC	1 cut(s)	815
BpmI	CTGGAG	2 cut(s)	167, 1163
Bpu14I	TTCGAA	1 cut(s)	287
BsaJI	CCNNGG	1 cut(s)	271
BsaXI	ACNNNNNCTCC	2 cut(s)	140, 170
Bsc4I	CCNNNNNNNGG	2 cut(s)	686, 790
Bse118I	RCCGGY	1 cut(s)	91
Bse1I	ACTGG	1 cut(s)	1146
BseDI	CCNNGG	1 cut(s)	271
BseGI	GGATG	1 cut(s)	780
BseLI	CCNNNNNNNGG	2 cut(s)	686, 790
BseMII	CTCAG	1 cut(s)	1126
BseNI	ACTGG	1 cut(s)	1146
BseRI	GAGGAG	2 cut(s)	449, 876
BseXI	GCAGC	4 cut(s)	456, 964, 1030, 1104
BseYI	CCCAGC	2 cut(s)	15, 627
BsgI	GTGCAG	1 cut(s)	204
Bsh1236I	CGCG	1 cut(s)	814
BsiHKAI	GWGCWC	1 cut(s)	199
BsiSI	CCGG	2 cut(s)	92, 395
BslI	CCNNNNNNNGG	2 cut(s)	686, 790
Bsp119I	TTCGAA	1 cut(s)	287
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp1407I	TGTACA	1 cut(s)	259
Bsp143I	GATC	7 cut(s)	50, 70, 202, 693, 874, 1002, 1104
BspACI	CCGC	1 cut(s)	657
BspCNI	CTCAG	1 cut(s)	1125
BspFNI	CGCG	1 cut(s)	814
BspLI	GGNNCC	1 cut(s)	736
BspMAI	CTGCAG	1 cut(s)	1122
BspMI	ACCTGC	1 cut(s)	677
BspPI	GGATC	2 cut(s)	58, 197
BspT104I	TTCGAA	1 cut(s)	287
BsrFI	RCCGGY	1 cut(s)	91
BsrGI	TGTACA	1 cut(s)	259
BsrI	ACTGG	1 cut(s)	1146
BssAI	RCCGGY	1 cut(s)	91
BssECI	CCNNGG	1 cut(s)	271
BssMI	GATC	7 cut(s)	50, 70, 202, 693, 874, 1002, 1104
BssNAI	GTATAC	1 cut(s)	1139
BssT1I	CCWWGG	1 cut(s)	271
Bst1107I	GTATAC	1 cut(s)	1139
Bst4CI	ACNGT	5 cut(s)	120, 367, 498, 576, 602
BstAUI	TGTACA	1 cut(s)	259
BstBI	TTCGAA	1 cut(s)	287
BstC8I	GCNNGC	4 cut(s)	388, 392, 612, 1039
BstDEI	CTNAG	1 cut(s)	1112
BstEII	GGTNACC	1 cut(s)	794
BstF5I	GGATG	1 cut(s)	780
BstFNI	CGCG	1 cut(s)	814
BstH2I	RGCGCY	1 cut(s)	442
BstHHI	GCGC	2 cut(s)	162, 441
BstKTI	GATC	7 cut(s)	53, 73, 205, 696, 877, 1005, 1107
BstMBI	GATC	7 cut(s)	50, 70, 202, 693, 874, 1002, 1104
BstMWI	GCNNNNNNNGC	1 cut(s)	983
BstPAI	GACNNNNGTC	1 cut(s)	815
BstPI	GGTNACC	1 cut(s)	794
BstSFI	CTRYAG	3 cut(s)	429, 981, 1118
BstUI	CGCG	1 cut(s)	814
BstV1I	GCAGC	4 cut(s)	456, 964, 1030, 1104
BstV2I	GAAGAC	1 cut(s)	815
BstX2I	RGATCY	2 cut(s)	202, 1104
BstYI	RGATCY	2 cut(s)	202, 1104
BstZ17I	GTATAC	1 cut(s)	1139
BtsCI	GGATG	1 cut(s)	780
BtsIMutI	CAGTG	2 cut(s)	306, 810
BveI	ACCTGC	1 cut(s)	677
Cac8I	GCNNGC	4 cut(s)	388, 392, 612, 1039
CaiI	CAGNNNCTG	1 cut(s)	180
CfoI	GCGC	2 cut(s)	162, 441
Cfr10I	RCCGGY	1 cut(s)	91
Cfr13I	GGNCC	2 cut(s)	131, 177
CseI	GACGC	2 cut(s)	95, 820
Csp6I	GTAC	2 cut(s)	260, 749
CviAII	CATG	1 cut(s)	504
CviQI	GTAC	2 cut(s)	260, 749
DdeI	CTNAG	1 cut(s)	1112
DpnI	GATC	7 cut(s)	52, 72, 204, 695, 876, 1004, 1106
DpnII	GATC	7 cut(s)	50, 70, 202, 693, 874, 1002, 1104
DrdI	GACNNNNNNGTC	1 cut(s)	776
DriI	GACNNNNNGTC	1 cut(s)	118
DseDI	GACNNNNNNGTC	1 cut(s)	776
Eam1105I	GACNNNNNGTC	1 cut(s)	118
Ecl136II	GAGCTC	1 cut(s)	197
Eco130I	CCWWGG	1 cut(s)	271
Eco24I	GRGCYC	1 cut(s)	199
Eco32I	GATATC	1 cut(s)	337
Eco47I	GGWCC	2 cut(s)	131, 177
Eco47III	AGCGCT	1 cut(s)	440
Eco53kI	GAGCTC	1 cut(s)	197
Eco91I	GGTNACC	1 cut(s)	794
EcoICRI	GAGCTC	1 cut(s)	197
EcoO109I	RGGNCCY	1 cut(s)	177
EcoO65I	GGTNACC	1 cut(s)	794
EcoRV	GATATC	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	271
EcoT38I	GRGCYC	1 cut(s)	199
ErhI	CCWWGG	1 cut(s)	271
FaeI	CATG	1 cut(s)	507
FalI	AAGNNNNNCTT	2 cut(s)	757, 789
FatI	CATG	1 cut(s)	503
FbaI	TGATCA	1 cut(s)	874
FblI	GTMKAC	3 cut(s)	11, 1083, 1138
Fnu4HI	GCNGC	4 cut(s)	470, 978, 1019, 1118
FokI	GGATG	1 cut(s)	767
FriOI	GRGCYC	1 cut(s)	199
Fsp4HI	GCNGC	4 cut(s)	470, 978, 1019, 1118
FspBI	CTAG	6 cut(s)	108, 200, 308, 473, 537, 743
GlaI	GCGC	2 cut(s)	161, 440
GluI	GCNGC	4 cut(s)	470, 978, 1019, 1118
GsaI	CCCAGC	2 cut(s)	19, 631
GsuI	CTGGAG	2 cut(s)	167, 1163
HaeII	RGCGCY	1 cut(s)	442
HapII	CCGG	2 cut(s)	92, 395
HgaI	GACGC	2 cut(s)	95, 820
HhaI	GCGC	2 cut(s)	162, 441
Hin1II	CATG	1 cut(s)	507
Hin6I	GCGC	2 cut(s)	160, 439
HinP1I	GCGC	2 cut(s)	160, 439
HindIII	AAGCTT	1 cut(s)	223
HinfI	GANTC	2 cut(s)	422, 641
HpaII	CCGG	2 cut(s)	92, 395
HphI	GGTGA	5 cut(s)	522, 730, 788, 953, 982
Hpy166II	GTNNAC	7 cut(s)	12, 134, 260, 370, 410, 1084, 1139
Hpy188I	TCNGA	4 cut(s)	85, 230, 322, 646
Hpy188III	TCNNGA	4 cut(s)	48, 200, 481, 872
Hpy8I	GTNNAC	7 cut(s)	12, 134, 260, 370, 410, 1084, 1139
HpyAV	CCTTC	2 cut(s)	283, 658
HpyCH4III	ACNGT	5 cut(s)	120, 367, 498, 576, 602
HpyCH4IV	ACGT	2 cut(s)	777, 917
HpyCH4V	TGCA	5 cut(s)	185, 280, 788, 1018, 1120
HpyF10VI	GCNNNNNNNGC	1 cut(s)	983
HpyF3I	CTNAG	1 cut(s)	1112
HpySE526I	ACGT	2 cut(s)	777, 917
Hsp92II	CATG	1 cut(s)	507
HspAI	GCGC	2 cut(s)	160, 439
Ksp22I	TGATCA	1 cut(s)	874
Kzo9I	GATC	7 cut(s)	50, 70, 202, 693, 874, 1002, 1104
LmnI	GCTCC	2 cut(s)	194, 436
Lsp1109I	GCAGC	4 cut(s)	456, 964, 1030, 1104
LweI	GCATC	2 cut(s)	92, 849
MaeI	CTAG	6 cut(s)	108, 200, 308, 473, 537, 743
MaeII	ACGT	2 cut(s)	777, 917
MaeIII	GTNAC	4 cut(s)	110, 620, 767, 794
MalI	GATC	7 cut(s)	52, 72, 204, 695, 876, 1004, 1106
MboI	GATC	7 cut(s)	50, 70, 202, 693, 874, 1002, 1104
MboII	GAAGA	3 cut(s)	417, 645, 820
MflI	RGATCY	2 cut(s)	202, 1104
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	5 cut(s)	25, 400, 541, 698, 867
MluI	ACGCGT	1 cut(s)	812
MlyI	GAGTC	1 cut(s)	635
MmeI	TCCRAC	1 cut(s)	685
MseI	TTAA	5 cut(s)	221, 710, 729, 834, 1170
MspA1I	CMGCKG	1 cut(s)	627
MspI	CCGG	2 cut(s)	92, 395
MvnI	CGCG	1 cut(s)	814
MwoI	GCNNNNNNNGC	1 cut(s)	983
NdeII	GATC	7 cut(s)	50, 70, 202, 693, 874, 1002, 1104
NlaIII	CATG	1 cut(s)	507
NlaIV	GGNNCC	1 cut(s)	736
NmeAIII	GCCGAG	1 cut(s)	973
NmuCI	GTSAC	3 cut(s)	110, 767, 794
NspV	TTCGAA	1 cut(s)	287
PfeI	GAWTC	1 cut(s)	422
PkrI	GCNGC	4 cut(s)	471, 979, 1020, 1119
PleI	GAGTC	1 cut(s)	635
PpsI	GAGTC	1 cut(s)	635
PpuMI	RGGWCCY	1 cut(s)	177
PshAI	GACNNNNGTC	1 cut(s)	815
PshBI	ATTAAT	1 cut(s)	710
PsiI	TTATAA	1 cut(s)	452
Psp124BI	GAGCTC	1 cut(s)	199
Psp5II	RGGWCCY	1 cut(s)	177
PspEI	GGTNACC	1 cut(s)	794
PspFI	CCCAGC	2 cut(s)	15, 627
PspN4I	GGNNCC	1 cut(s)	736
PspPI	GGNCC	2 cut(s)	131, 177
PspPPI	RGGWCCY	1 cut(s)	177
PsrI	GAACNNNNNNTAC	2 cut(s)	235, 267
PstI	CTGCAG	1 cut(s)	1122
PstNI	CAGNNNCTG	1 cut(s)	180
PsuI	RGATCY	2 cut(s)	202, 1104
PvuII	CAGCTG	1 cut(s)	627
RsaI	GTAC	2 cut(s)	261, 750
RsaNI	GTAC	2 cut(s)	260, 749
SacI	GAGCTC	1 cut(s)	199
SaqAI	TTAA	5 cut(s)	221, 710, 729, 834, 1170
SatI	GCNGC	4 cut(s)	470, 978, 1019, 1118
Sau3AI	GATC	7 cut(s)	50, 70, 202, 693, 874, 1002, 1104
Sau96I	GGNCC	2 cut(s)	131, 177
SchI	GAGTC	1 cut(s)	635
SduI	GDGCHC	1 cut(s)	199
SfaNI	GCATC	2 cut(s)	92, 849
SfcI	CTRYAG	3 cut(s)	429, 981, 1118
SfuI	TTCGAA	1 cut(s)	287
SinI	GGWCC	2 cut(s)	131, 177
Sse9I	AATT	5 cut(s)	25, 400, 541, 698, 867
SsiI	CCGC	1 cut(s)	657
SspMI	CTAG	6 cut(s)	108, 200, 308, 473, 537, 743
SstI	GAGCTC	1 cut(s)	199
StyI	CCWWGG	1 cut(s)	271
TaaI	ACNGT	5 cut(s)	120, 367, 498, 576, 602
TaiI	ACGT	2 cut(s)	780, 920
TaqI	TCGA	2 cut(s)	287, 696
TasI	AATT	5 cut(s)	25, 400, 541, 698, 867
TatI	WGTACW	1 cut(s)	259
TfiI	GAWTC	1 cut(s)	422
Tru1I	TTAA	5 cut(s)	221, 710, 729, 834, 1170
Tru9I	TTAA	5 cut(s)	221, 710, 729, 834, 1170
TscAI	CASTG	2 cut(s)	306, 810
TseFI	GTSAC	3 cut(s)	110, 767, 794
TseI	GCWGC	4 cut(s)	469, 977, 1018, 1117
Tsp45I	GTSAC	3 cut(s)	110, 767, 794
TspDTI	ATGAA	4 cut(s)	327, 342, 507, 1023
TspRI	CASTG	2 cut(s)	306, 810
VpaK11BI	GGWCC	2 cut(s)	131, 177
VspI	ATTAAT	1 cut(s)	710
XapI	RAATTY	2 cut(s)	400, 698
XbaI	TCTAGA	1 cut(s)	199
XmiI	GTMKAC	3 cut(s)	11, 1083, 1138
XspI	CTAG	6 cut(s)	108, 200, 308, 473, 537, 743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.