Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004089

Physical Location & Seq

Genomic Coordinates Forward (+)

3534123 .. 3539704

Gene Structure 5582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G032700.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGAGATGTCTACCCAGCGAGATAATTCTGGTCCCAACAAAGTTTCAGGATCAAGTTCTTGCCTATATGATCTCTTATGTTCAGACGCACCGACTTGGAGATGCCCAAGTGACCGACGAACACAATCTGGTCCACAAGAAAGGTTAGAGATTTTGTTGCATCAATCTGCCAATAGGTCCTGTGCAGATTGTGGATCTCTAGATCCAAAATGGGTATCTTTAAGCTTTGGAGTATTTATTTGTATAAAATGTTCTGGTGTACATAGAAGCCTGGGAGTGCATGTATCAAAGGTTGTATCAGTGAAGCTAGATGAATGGACAGATGAAGAAGTTGATATCTTGGCGAGTATGGGAGGAAACGTTGCTGTAAATAAGAAGTATGAAGCTTGCTTGCCAGAAAATGTCAAAAAACCAAAACCAGATTCTTCTATAGAGGAGCGCTTTTATTTTATTAGGAGAAAATATGAGCTGTTAGACTTTTTAAACCCCAATGAACAGGTGTCCTGTCCTTATCCGCCTTCTCATAAGAAGTCACCTTCTAGCAATTCAACCAATAATTCTACCCAAGATAAGAAACAGTTTGAAAAACAACCAACGAAACATCGTATTGGGCAGGCATTTCGTAACAGCTGGGGAAGAAAAGACTCTGAACATAAGACTGCGAAGAAGGGCAACTCAATGCCAATGGCAGGTATGGTTGAATTTGTTGGATTAGTTAAGGTGAATGTTGTTAGAGGAACCAACCTAGTTGTACGGGATGTGATGACAAGTGACCCCTACGTCATCCTGGCATTGGGTCACCAATCAGTGAAGACACGTGTTATTAAAAACAACTTAAATCCAGTATGGAATGAGAGCCTGATGCTGTCAATTCCTGAACACATTCCTCCTCTAAAAGTGCTGGTGTATGACAAAGATACATTCACAACTGATGATTTTATGGGTGAGGCTGAAATTGACATTCAACCTCTGGTGAGTGCTGCCATAGCCTATGAGAAGTCCACGATCAATGAGCCGGTGCAGCTTGGAAAGTGGGTAGCCAGCAAAGAAAATACACTGGTAAAAGACGGTGTCATCAACCTAGTAGATGGGAAAGTAAGACAGCAAATCACTCTCAGGCTGCAGAATGTTGAGAGGGGTGTACTGGAGATTGAGCTTGAATGTGTTCCTCTTAATCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ArfGap C2

Protein Analysis

394

Amino Acids

44.0

Weight (kDa)

7.96

Isoelectric Point (pI)

46.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07940 AT3G07940
fragaria_vesca	FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820
malus_domestica	MD02G1289600.v1.1 MD07G1037300.v1.1
prunus_persica	Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1
pyrus_communis	pycom02g24520 pycom07g02610
rosa_chinensis	RchiOBHm_Chr1g0323271
rosa_laevigata	RLG00000030341
rosa_multiflora	Rmu_sc0002263.1_g000073 Rmu_sc0003418.1_g000004
rosa_roxburghii	Rroxscaffold_4G00326710
rosa_rugosa	Rorug01G0037200 Rorug01G0037300
rosa_samantha	Rh1AG054500 Rh1BG047400 Rh1CG055700 Rh1DG059600
rosa_wichuraiana	Rw1G004740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	779
Acc36I	ACCTGC	1 cut(s)	680
AccI	GTMKAC	1 cut(s)	11
AciI	CCGC	1 cut(s)	515
AclI	AACGTT	1 cut(s)	360
AclWI	GGATC	3 cut(s)	58, 197, 202
AcsI	RAATTY	1 cut(s)	701
AcvI	CACGTG	1 cut(s)	818
AfaI	GTAC	3 cut(s)	261, 753, 1143
AfeI	AGCGCT	1 cut(s)	440
AfiI	CCNNNNNNNGG	2 cut(s)	689, 793
AflIII	ACRYGT	2 cut(s)	815, 817
AgsI	TTSAA	5 cut(s)	549, 584, 701, 965, 1160
AjnI	CCWGG	2 cut(s)	270, 786
AjuI	GAANNNNNNNTTGG	2 cut(s)	406, 438
AluBI	AGCT	7 cut(s)	225, 307, 386, 469, 630, 1024, 1156
AluI	AGCT	7 cut(s)	225, 307, 386, 469, 630, 1024, 1156
AlwI	GGATC	3 cut(s)	58, 197, 202
Aor51HI	AGCGCT	1 cut(s)	440
ApeKI	GCWGC	3 cut(s)	980, 1021, 1120
ApoI	RAATTY	1 cut(s)	701
Asp700I	GAANNNNTTC	2 cut(s)	882, 1164
AspLEI	GCGC	1 cut(s)	441
AspS9I	GGNCC	3 cut(s)	32, 131, 177
AsuHPI	GGTGA	5 cut(s)	525, 733, 791, 956, 985
AvaII	GGWCC	3 cut(s)	32, 131, 177
BbrPI	CACGTG	1 cut(s)	818
BbsI	GAAGAC	1 cut(s)	818
BbvI	GCAGC	3 cut(s)	967, 1033, 1107
BccI	CCATC	1 cut(s)	1082
BcgI	CGANNNNNNTGC	2 cut(s)	602, 636
BciT130I	CCWGG	2 cut(s)	272, 788
BfaI	CTAG	5 cut(s)	200, 308, 540, 746, 1082
BfmI	CTRYAG	2 cut(s)	429, 1121
BfoI	RGCGCY	1 cut(s)	442
BfuAI	ACCTGC	1 cut(s)	680
BisI	GCNGC	3 cut(s)	981, 1022, 1121
BlsI	GCNGC	3 cut(s)	982, 1023, 1122
Bme1390I	CCNGG	2 cut(s)	272, 788
Bme18I	GGWCC	3 cut(s)	32, 131, 177
BmgT120I	GGNCC	3 cut(s)	32, 131, 177
BmiI	GGNNCC	2 cut(s)	34, 739
BmrFI	CCNGG	2 cut(s)	272, 788
BmsI	GCATC	3 cut(s)	92, 169, 852
BpiI	GAAGAC	1 cut(s)	818
BpmI	CTGGAG	1 cut(s)	1166
BsaAI	YACGTR	1 cut(s)	818
BsaJI	CCNNGG	1 cut(s)	271
BsaXI	ACNNNNNCTCC	4 cut(s)	267, 297, 345, 375
Bsc4I	CCNNNNNNNGG	2 cut(s)	689, 793
Bse118I	RCCGGY	1 cut(s)	1015
Bse1I	ACTGG	3 cut(s)	842, 1062, 1149
BseBI	CCWGG	2 cut(s)	272, 788
BseDI	CCNNGG	1 cut(s)	271
BseGI	GGATG	2 cut(s)	763, 783
BseLI	CCNNNNNNNGG	2 cut(s)	689, 793
BseMII	CTCAG	1 cut(s)	1129
BseNI	ACTGG	3 cut(s)	842, 1062, 1149
BseRI	GAGGAG	2 cut(s)	449, 879
BseXI	GCAGC	3 cut(s)	967, 1033, 1107
BseYI	CCCAGC	2 cut(s)	15, 630
BsgI	GTGCAG	2 cut(s)	204, 1040
BsiSI	CCGG	1 cut(s)	1016
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	2 cut(s)	689, 793
BsmFI	GGGAC	1 cut(s)	18
Bsp1407I	TGTACA	1 cut(s)	259
Bsp143I	GATC	5 cut(s)	50, 70, 194, 202, 1005
BspACI	CCGC	1 cut(s)	515
BspCNI	CTCAG	1 cut(s)	1128
BspLI	GGNNCC	2 cut(s)	34, 739
BspMAI	CTGCAG	1 cut(s)	1125
BspMI	ACCTGC	1 cut(s)	680
BspPI	GGATC	3 cut(s)	58, 197, 202
BsrFI	RCCGGY	1 cut(s)	1015
BsrGI	TGTACA	1 cut(s)	259
BsrI	ACTGG	3 cut(s)	842, 1062, 1149
BssAI	RCCGGY	1 cut(s)	1015
BssECI	CCNNGG	1 cut(s)	271
BssMI	GATC	5 cut(s)	50, 70, 194, 202, 1005
Bst2UI	CCWGG	2 cut(s)	272, 788
Bst4CI	ACNGT	2 cut(s)	579, 1070
BstAUI	TGTACA	1 cut(s)	259
BstBAI	YACGTR	1 cut(s)	818
BstC8I	GCNNGC	4 cut(s)	388, 392, 615, 1042
BstDEI	CTNAG	1 cut(s)	1115
BstEII	GGTNACC	1 cut(s)	797
BstF5I	GGATG	2 cut(s)	763, 783
BstH2I	RGCGCY	1 cut(s)	442
BstHHI	GCGC	1 cut(s)	441
BstKTI	GATC	5 cut(s)	53, 73, 197, 205, 1008
BstMBI	GATC	5 cut(s)	50, 70, 194, 202, 1005
BstMWI	GCNNNNNNNGC	2 cut(s)	986, 1021
BstNI	CCWGG	2 cut(s)	272, 788
BstNSI	RCATGY	1 cut(s)	284
BstPI	GGTNACC	1 cut(s)	797
BstSCI	CCNGG	2 cut(s)	270, 786
BstSFI	CTRYAG	2 cut(s)	429, 1121
BstV1I	GCAGC	3 cut(s)	967, 1033, 1107
BstV2I	GAAGAC	1 cut(s)	818
BstX2I	RGATCY	2 cut(s)	194, 202
BstYI	RGATCY	2 cut(s)	194, 202
BtsCI	GGATG	2 cut(s)	763, 783
BtsIMutI	CAGTG	3 cut(s)	306, 813, 1055
BveI	ACCTGC	1 cut(s)	680
Cac8I	GCNNGC	4 cut(s)	388, 392, 615, 1042
CfoI	GCGC	1 cut(s)	441
Cfr10I	RCCGGY	1 cut(s)	1015
Cfr13I	GGNCC	3 cut(s)	32, 131, 177
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	3 cut(s)	260, 752, 1142
CviAII	CATG	1 cut(s)	281
CviQI	GTAC	3 cut(s)	260, 752, 1142
DdeI	CTNAG	1 cut(s)	1115
DpnI	GATC	5 cut(s)	52, 72, 196, 204, 1007
DpnII	GATC	5 cut(s)	50, 70, 194, 202, 1005
DraI	TTTAAA	1 cut(s)	483
DrdI	GACNNNNNNGTC	1 cut(s)	779
DseDI	GACNNNNNNGTC	1 cut(s)	779
EciI	GGCGGA	1 cut(s)	504
Eco32I	GATATC	1 cut(s)	337
Eco47I	GGWCC	3 cut(s)	32, 131, 177
Eco47III	AGCGCT	1 cut(s)	440
Eco72I	CACGTG	1 cut(s)	818
Eco91I	GGTNACC	1 cut(s)	797
EcoO109I	RGGNCCY	1 cut(s)	177
EcoO65I	GGTNACC	1 cut(s)	797
EcoRII	CCWGG	2 cut(s)	270, 786
EcoRV	GATATC	1 cut(s)	337
FaeI	CATG	1 cut(s)	284
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	1 cut(s)	280
FblI	GTMKAC	1 cut(s)	11
Fnu4HI	GCNGC	3 cut(s)	981, 1022, 1121
FokI	GGATG	2 cut(s)	770, 770
Fsp4HI	GCNGC	3 cut(s)	981, 1022, 1121
FspBI	CTAG	5 cut(s)	200, 308, 540, 746, 1082
GlaI	GCGC	1 cut(s)	440
GluI	GCNGC	3 cut(s)	981, 1022, 1121
GsaI	CCCAGC	2 cut(s)	19, 634
GsuI	CTGGAG	1 cut(s)	1166
HaeII	RGCGCY	1 cut(s)	442
HapII	CCGG	1 cut(s)	1016
HgaI	GACGC	1 cut(s)	95
HhaI	GCGC	1 cut(s)	441
Hin1II	CATG	1 cut(s)	284
Hin6I	GCGC	1 cut(s)	439
HinP1I	GCGC	1 cut(s)	439
HindIII	AAGCTT	2 cut(s)	223, 384
HinfI	GANTC	2 cut(s)	422, 644
HpaII	CCGG	1 cut(s)	1016
HphI	GGTGA	5 cut(s)	525, 733, 791, 956, 985
Hpy166II	GTNNAC	5 cut(s)	12, 134, 260, 1002, 1142
Hpy188I	TCNGA	2 cut(s)	85, 649
Hpy188III	TCNNGA	3 cut(s)	48, 200, 875
Hpy8I	GTNNAC	5 cut(s)	12, 134, 260, 1002, 1142
Hpy99I	CGWCG	1 cut(s)	120
HpyAV	CCTTC	3 cut(s)	528, 546, 661
HpyCH4III	ACNGT	2 cut(s)	579, 1070
HpyCH4IV	ACGT	3 cut(s)	360, 780, 817
HpyCH4V	TGCA	5 cut(s)	160, 185, 280, 1021, 1123
HpyF10VI	GCNNNNNNNGC	2 cut(s)	986, 1021
HpyF3I	CTNAG	1 cut(s)	1115
HpySE526I	ACGT	3 cut(s)	360, 780, 817
Hsp92II	CATG	1 cut(s)	284
HspAI	GCGC	1 cut(s)	439
Kzo9I	GATC	5 cut(s)	50, 70, 194, 202, 1005
LmnI	GCTCC	1 cut(s)	436
Lsp1109I	GCAGC	3 cut(s)	967, 1033, 1107
LweI	GCATC	3 cut(s)	92, 169, 852
MaeI	CTAG	5 cut(s)	200, 308, 540, 746, 1082
MaeII	ACGT	3 cut(s)	360, 780, 817
MaeIII	GTNAC	5 cut(s)	110, 531, 623, 770, 797
MalI	GATC	5 cut(s)	52, 72, 196, 204, 1007
MboI	GATC	5 cut(s)	50, 70, 194, 202, 1005
MboII	GAAGA	5 cut(s)	338, 417, 648, 676, 823
MflI	RGATCY	2 cut(s)	194, 202
MluCI	AATT	6 cut(s)	25, 544, 556, 701, 870, 954
MlyI	GAGTC	1 cut(s)	638
MmeI	TCCRAC	1 cut(s)	688
MnlI	CCTC	9 cut(s)	347, 427, 728, 897, 900, 940, 978, 1128, 1179
MroXI	GAANNNNTTC	2 cut(s)	882, 1164
MseI	TTAA	6 cut(s)	221, 482, 717, 825, 836, 1173
MspA1I	CMGCKG	1 cut(s)	630
MspI	CCGG	1 cut(s)	1016
MspR9I	CCNGG	2 cut(s)	272, 788
MvaI	CCWGG	2 cut(s)	272, 788
MwoI	GCNNNNNNNGC	2 cut(s)	986, 1021
NdeII	GATC	5 cut(s)	50, 70, 194, 202, 1005
NlaIII	CATG	1 cut(s)	284
NlaIV	GGNNCC	2 cut(s)	34, 739
NmuCI	GTSAC	4 cut(s)	110, 531, 770, 797
NspI	RCATGY	1 cut(s)	284
PdmI	GAANNNNTTC	2 cut(s)	882, 1164
PfeI	GAWTC	1 cut(s)	422
PflFI	GACNNNGTC	1 cut(s)	1070
PkrI	GCNGC	3 cut(s)	982, 1023, 1122
PleI	GAGTC	1 cut(s)	638
PmaCI	CACGTG	1 cut(s)	818
PmlI	CACGTG	1 cut(s)	818
PpsI	GAGTC	1 cut(s)	638
Ppu21I	YACGTR	1 cut(s)	818
PpuMI	RGGWCCY	1 cut(s)	177
Psp1406I	AACGTT	1 cut(s)	360
Psp5II	RGGWCCY	1 cut(s)	177
Psp6I	CCWGG	2 cut(s)	270, 786
PspCI	CACGTG	1 cut(s)	818
PspEI	GGTNACC	1 cut(s)	797
PspFI	CCCAGC	2 cut(s)	15, 630
PspGI	CCWGG	2 cut(s)	270, 786
PspN4I	GGNNCC	2 cut(s)	34, 739
PspPI	GGNCC	3 cut(s)	32, 131, 177
PspPPI	RGGWCCY	1 cut(s)	177
PsrI	GAACNNNNNNTAC	2 cut(s)	235, 267
PstI	CTGCAG	1 cut(s)	1125
PsuI	RGATCY	2 cut(s)	194, 202
PsyI	GACNNNGTC	1 cut(s)	1070
PvuII	CAGCTG	1 cut(s)	630
RsaI	GTAC	3 cut(s)	261, 753, 1143
RsaNI	GTAC	3 cut(s)	260, 752, 1142
SaqAI	TTAA	6 cut(s)	221, 482, 717, 825, 836, 1173
SatI	GCNGC	3 cut(s)	981, 1022, 1121
Sau3AI	GATC	5 cut(s)	50, 70, 194, 202, 1005
Sau96I	GGNCC	3 cut(s)	32, 131, 177
SchI	GAGTC	1 cut(s)	638
ScrFI	CCNGG	2 cut(s)	272, 788
SfaNI	GCATC	3 cut(s)	92, 169, 852
SfcI	CTRYAG	2 cut(s)	429, 1121
SinI	GGWCC	3 cut(s)	32, 131, 177
Sse9I	AATT	6 cut(s)	25, 544, 556, 701, 870, 954
SsiI	CCGC	1 cut(s)	515
SspMI	CTAG	5 cut(s)	200, 308, 540, 746, 1082
StyD4I	CCNGG	2 cut(s)	270, 786
TaaI	ACNGT	2 cut(s)	579, 1070
TaiI	ACGT	3 cut(s)	363, 783, 820
TaqII	GACCGA	1 cut(s)	129
TasI	AATT	6 cut(s)	25, 544, 556, 701, 870, 954
TatI	WGTACW	2 cut(s)	259, 1141
TfiI	GAWTC	1 cut(s)	422
Tru1I	TTAA	6 cut(s)	221, 482, 717, 825, 836, 1173
Tru9I	TTAA	6 cut(s)	221, 482, 717, 825, 836, 1173
TscAI	CASTG	3 cut(s)	306, 813, 1062
TseFI	GTSAC	4 cut(s)	110, 531, 770, 797
TseI	GCWGC	3 cut(s)	980, 1021, 1120
Tsp45I	GTSAC	4 cut(s)	110, 531, 770, 797
TspDTI	ATGAA	4 cut(s)	327, 339, 396, 507
TspRI	CASTG	3 cut(s)	306, 813, 1062
Tth111I	GACNNNGTC	1 cut(s)	1070
VpaK11BI	GGWCC	3 cut(s)	32, 131, 177
XapI	RAATTY	1 cut(s)	701
XbaI	TCTAGA	1 cut(s)	199
XceI	RCATGY	1 cut(s)	284
XmiI	GTMKAC	1 cut(s)	11
XmnI	GAANNNNTTC	2 cut(s)	882, 1164
XspI	CTAG	5 cut(s)	200, 308, 540, 746, 1082

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.