Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0004089

Physical Location & Seq

Genomic Coordinates Reverse (-)

34581081 .. 34586452

Gene Structure 5372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1289600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGAGATGTCTACCCAGCAAGATAATTCTGTTCCCAACAAAGTCTCAGGGTCAGGTTCTTGCCTCTACGATCTCTTATGTTCAGACACACCGGTTTGGAGATGCCCTAGTGATCGACGTACATTATCTGGTCCACAAGAAAGGCTGGAGATTTTGTTGCACCAATCTGCCAACAGGTCCTGTGCAGATTGTGGAGCTCTAGATCCAAAATGGGTATCTTTAACCTTCGGAGTATTTATTTGTATAAAGTGTTCTGGTGTACATAGAAGCCTTGGAGTGCATATTTCGAAGGTTGTATCAGTGAAGCTAGATGAATGGACAGATGATGAAGTTGAGATCTTGGCAAGTATGGGAGGAAATACTACTGTAAACAAGAAGTATGAGGCTCGCTTGCCAGAAAATGTCAGCAAACCAAAACCAGATTCTTCTATAGAGGAGCGCTTTTATTTTATTAGGAGAAAATATGAGCTGCTAGACTTCTTGAACTCTGATGAACAGATGTCATGTCCCTTCCCACCTAATAAGAAATCAAACAATTCAACTGTTAGTTCTACCCAAGATAAGAAACAGTATGAGAAACAACCAACAAAACACCGCATTGGTCAGGCATTTCGTAACAGCTGGGGAAGAAAAGATTCTGAACATAAGACCGCAAAGAAGGGCTACTCAATGCCGATGGCAGGTATGGTCGAATTTGTTGGACTAATTAAGGTGAATGTGGTTAGAGGAACCAACCTAGTTGTACGGGATATGGTGACAAGTGACCCTTACGTCATCCTTGCATTGGGTCACCAATCGGTGAAGACACGTGTCATAAAGAACAACCTTAATCCAGTATGGAATGAGAGCCTGATGCTGTCAATTCCTGACCACATACCTCCTCTAAAAGTGCTGGTATATGACAAAGATACGTTCAAAGCTGATGATTTTATGGGTGAGGCTGAGATTGACATTCAACCTTTGGTGAGTGCTGCCATAGCCTATGAGAAGTCCTCAATCAATGAGCCGGTGCAGCTTGGAAAGTGGGTAGCCAGCAAAGAAAATGCACTTGTAAAAGATGGTGTCATCAACCTAGTGGACGGGGGAGTGAGACAGCAGATCACTCTCAGGCTGCAGAATGTTGAGAGGGGTATACTGGAGATTGAGCTTGAATGTGTGCCTCTTAATCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ArfGap C2

Protein Analysis

391

Amino Acids

43.71

Weight (kDa)

7.03

Isoelectric Point (pI)

46.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArfGap	PF01412	47 - 161	2.9e-37	Putative GTPase activating protein for Arf
C2	PF00168	235 - 323	5.1e-24	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07940 AT3G07940
fragaria_vesca	FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820 FvH4_7g02820
malus_domestica	MD02G1289600.v1.1 MD07G1037300.v1.1
prunus_persica	Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1 Prupe.2G032700_v2.0.a1
pyrus_communis	pycom02g24520 pycom07g02610
rosa_chinensis	RchiOBHm_Chr1g0323271
rosa_laevigata	RLG00000030341
rosa_multiflora	Rmu_sc0002263.1_g000073 Rmu_sc0003418.1_g000004
rosa_roxburghii	Rroxscaffold_4G00326710
rosa_rugosa	Rorug01G0037200 Rorug01G0037300
rosa_samantha	Rh1AG054500 Rh1BG047400 Rh1CG055700 Rh1DG059600
rosa_wichuraiana	Rw1G004740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	770
Acc36I	ACCTGC	1 cut(s)	671
AccI	GTMKAC	2 cut(s)	11, 1132
AciI	CCGC	2 cut(s)	595, 651
AclWI	GGATC	1 cut(s)	197
AcsI	RAATTY	1 cut(s)	692
AcvI	CACGTG	1 cut(s)	809
AfaI	GTAC	3 cut(s)	121, 261, 744
AfeI	AGCGCT	1 cut(s)	440
AfiI	CCNNNNNNNGG	2 cut(s)	680, 784
AflIII	ACRYGT	2 cut(s)	806, 808
AgeI	ACCGGT	1 cut(s)	91
AgsI	TTSAA	5 cut(s)	484, 540, 916, 956, 1151
AjuI	GAANNNNNNNTTGG	2 cut(s)	406, 438
AluBI	AGCT	7 cut(s)	197, 307, 469, 621, 920, 1015, 1147
AluI	AGCT	7 cut(s)	197, 307, 469, 621, 920, 1015, 1147
Alw21I	GWGCWC	1 cut(s)	199
Alw26I	GTCTC	2 cut(s)	49, 1084
AlwI	GGATC	1 cut(s)	197
AlwNI	CAGNNNCTG	1 cut(s)	180
Aor51HI	AGCGCT	1 cut(s)	440
ApeKI	GCWGC	4 cut(s)	469, 971, 1012, 1111
ApoI	RAATTY	1 cut(s)	692
AsiGI	ACCGGT	1 cut(s)	91
Asp700I	GAANNNNTTC	1 cut(s)	634
AspLEI	GCGC	1 cut(s)	441
AspS9I	GGNCC	2 cut(s)	131, 177
AsuHPI	GGTGA	6 cut(s)	724, 766, 782, 811, 947, 976
AsuII	TTCGAA	1 cut(s)	287
AvaII	GGWCC	2 cut(s)	131, 177
BanII	GRGCYC	1 cut(s)	199
BbrPI	CACGTG	1 cut(s)	809
BbsI	GAAGAC	1 cut(s)	809
Bbv12I	GWGCWC	1 cut(s)	199
BbvI	GCAGC	4 cut(s)	456, 958, 1024, 1098
BccI	CCATC	2 cut(s)	670, 1052
BcoDI	GTCTC	2 cut(s)	49, 1084
BfaI	CTAG	6 cut(s)	108, 200, 308, 473, 737, 1073
BfmI	CTRYAG	2 cut(s)	429, 1112
BfoI	RGCGCY	1 cut(s)	442
BfuAI	ACCTGC	1 cut(s)	671
BglII	AGATCT	1 cut(s)	336
BisI	GCNGC	4 cut(s)	470, 972, 1013, 1112
BlsI	GCNGC	4 cut(s)	471, 973, 1014, 1113
Bme18I	GGWCC	2 cut(s)	131, 177
BmgT120I	GGNCC	2 cut(s)	131, 177
BmiI	GGNNCC	1 cut(s)	730
BmsI	GCATC	2 cut(s)	92, 843
BoxI	GACNNNNGTC	1 cut(s)	809
BpiI	GAAGAC	1 cut(s)	809
BplI	GAGNNNNNCTC	2 cut(s)	977, 1009
BpmI	CTGGAG	2 cut(s)	167, 1157
Bpu14I	TTCGAA	1 cut(s)	287
BsaAI	YACGTR	1 cut(s)	809
BsaJI	CCNNGG	1 cut(s)	271
BsaWI	WCCGGW	1 cut(s)	91
BsaXI	ACNNNNNCTCC	2 cut(s)	140, 170
Bsc4I	CCNNNNNNNGG	2 cut(s)	680, 784
Bse118I	RCCGGY	2 cut(s)	91, 1006
Bse1I	ACTGG	2 cut(s)	833, 1140
BseDI	CCNNGG	1 cut(s)	271
BseGI	GGATG	1 cut(s)	774
BseLI	CCNNNNNNNGG	2 cut(s)	680, 784
BseMII	CTCAG	3 cut(s)	60, 933, 1120
BseNI	ACTGG	2 cut(s)	833, 1140
BseRI	GAGGAG	2 cut(s)	449, 870
BseXI	GCAGC	4 cut(s)	456, 958, 1024, 1098
BseYI	CCCAGC	2 cut(s)	15, 621
BsgI	GTGCAG	2 cut(s)	204, 1031
BshTI	ACCGGT	1 cut(s)	91
BsiHKAI	GWGCWC	1 cut(s)	199
BsiSI	CCGG	2 cut(s)	92, 1007
BslFI	GGGAC	1 cut(s)	492
BslI	CCNNNNNNNGG	2 cut(s)	680, 784
BsmAI	GTCTC	2 cut(s)	49, 1084
BsmFI	GGGAC	1 cut(s)	492
Bsp119I	TTCGAA	1 cut(s)	287
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp1407I	TGTACA	1 cut(s)	259
Bsp143I	GATC	5 cut(s)	70, 112, 202, 336, 1098
BspACI	CCGC	2 cut(s)	595, 651
BspCNI	CTCAG	3 cut(s)	59, 934, 1119
BspLI	GGNNCC	1 cut(s)	730
BspMAI	CTGCAG	1 cut(s)	1116
BspMI	ACCTGC	1 cut(s)	671
BspPI	GGATC	1 cut(s)	197
BspT104I	TTCGAA	1 cut(s)	287
BsrFI	RCCGGY	2 cut(s)	91, 1006
BsrGI	TGTACA	1 cut(s)	259
BsrI	ACTGG	2 cut(s)	833, 1140
BssAI	RCCGGY	2 cut(s)	91, 1006
BssECI	CCNNGG	1 cut(s)	271
BssMI	GATC	5 cut(s)	70, 112, 202, 336, 1098
BssNAI	GTATAC	1 cut(s)	1133
BssT1I	CCWWGG	1 cut(s)	271
Bst1107I	GTATAC	1 cut(s)	1133
Bst4CI	ACNGT	3 cut(s)	367, 544, 570
BstAUI	TGTACA	1 cut(s)	259
BstBAI	YACGTR	1 cut(s)	809
BstBI	TTCGAA	1 cut(s)	287
BstC8I	GCNNGC	3 cut(s)	388, 392, 1033
BstDEI	CTNAG	3 cut(s)	46, 942, 1106
BstEII	GGTNACC	1 cut(s)	788
BstF5I	GGATG	1 cut(s)	774
BstH2I	RGCGCY	1 cut(s)	442
BstHHI	GCGC	1 cut(s)	441
BstKTI	GATC	5 cut(s)	73, 115, 205, 339, 1101
BstMAI	GTCTC	2 cut(s)	49, 1084
BstMBI	GATC	5 cut(s)	70, 112, 202, 336, 1098
BstMWI	GCNNNNNNNGC	2 cut(s)	977, 1012
BstPAI	GACNNNNGTC	1 cut(s)	809
BstPI	GGTNACC	1 cut(s)	788
BstSFI	CTRYAG	2 cut(s)	429, 1112
BstV1I	GCAGC	4 cut(s)	456, 958, 1024, 1098
BstV2I	GAAGAC	1 cut(s)	809
BstX2I	RGATCY	2 cut(s)	202, 336
BstYI	RGATCY	2 cut(s)	202, 336
BstZ17I	GTATAC	1 cut(s)	1133
BtsCI	GGATG	1 cut(s)	774
BtsIMutI	CAGTG	1 cut(s)	306
BveI	ACCTGC	1 cut(s)	671
Cac8I	GCNNGC	3 cut(s)	388, 392, 1033
CaiI	CAGNNNCTG	1 cut(s)	180
CfoI	GCGC	1 cut(s)	441
Cfr10I	RCCGGY	2 cut(s)	91, 1006
Cfr13I	GGNCC	2 cut(s)	131, 177
Csp6I	GTAC	3 cut(s)	120, 260, 743
CspAI	ACCGGT	1 cut(s)	91
CviAII	CATG	1 cut(s)	504
CviQI	GTAC	3 cut(s)	120, 260, 743
DdeI	CTNAG	3 cut(s)	46, 942, 1106
DpnI	GATC	5 cut(s)	72, 114, 204, 338, 1100
DpnII	GATC	5 cut(s)	70, 112, 202, 336, 1098
DrdI	GACNNNNNNGTC	1 cut(s)	770
DseDI	GACNNNNNNGTC	1 cut(s)	770
Ecl136II	GAGCTC	1 cut(s)	197
Eco130I	CCWWGG	1 cut(s)	271
Eco24I	GRGCYC	1 cut(s)	199
Eco47I	GGWCC	2 cut(s)	131, 177
Eco47III	AGCGCT	1 cut(s)	440
Eco53kI	GAGCTC	1 cut(s)	197
Eco72I	CACGTG	1 cut(s)	809
Eco91I	GGTNACC	1 cut(s)	788
EcoICRI	GAGCTC	1 cut(s)	197
EcoO109I	RGGNCCY	1 cut(s)	177
EcoO65I	GGTNACC	1 cut(s)	788
EcoT14I	CCWWGG	1 cut(s)	271
EcoT38I	GRGCYC	1 cut(s)	199
ErhI	CCWWGG	1 cut(s)	271
FaeI	CATG	1 cut(s)	507
FalI	AAGNNNNNCTT	2 cut(s)	751, 783
FaqI	GGGAC	1 cut(s)	492
FatI	CATG	1 cut(s)	503
FblI	GTMKAC	2 cut(s)	11, 1132
Fnu4HI	GCNGC	4 cut(s)	470, 972, 1013, 1112
FokI	GGATG	1 cut(s)	761
FriOI	GRGCYC	1 cut(s)	199
Fsp4HI	GCNGC	4 cut(s)	470, 972, 1013, 1112
FspBI	CTAG	6 cut(s)	108, 200, 308, 473, 737, 1073
GlaI	GCGC	1 cut(s)	440
GluI	GCNGC	4 cut(s)	470, 972, 1013, 1112
GsaI	CCCAGC	2 cut(s)	19, 625
GsuI	CTGGAG	2 cut(s)	167, 1157
HaeII	RGCGCY	1 cut(s)	442
HapII	CCGG	2 cut(s)	92, 1007
HhaI	GCGC	1 cut(s)	441
Hin1II	CATG	1 cut(s)	507
Hin6I	GCGC	1 cut(s)	439
HinP1I	GCGC	1 cut(s)	439
HinfI	GANTC	2 cut(s)	422, 635
HpaII	CCGG	2 cut(s)	92, 1007
HphI	GGTGA	6 cut(s)	724, 766, 782, 811, 947, 976
Hpy166II	GTNNAC	6 cut(s)	12, 134, 260, 370, 1078, 1133
Hpy188I	TCNGA	4 cut(s)	85, 230, 490, 640
Hpy188III	TCNNGA	3 cut(s)	200, 481, 866
Hpy8I	GTNNAC	6 cut(s)	12, 134, 260, 370, 1078, 1133
Hpy99I	CGWCG	1 cut(s)	120
HpyAV	CCTTC	4 cut(s)	235, 283, 520, 652
HpyCH4III	ACNGT	3 cut(s)	367, 544, 570
HpyCH4IV	ACGT	4 cut(s)	118, 771, 808, 911
HpyCH4V	TGCA	7 cut(s)	160, 185, 280, 782, 1012, 1046, 1114
HpyF10VI	GCNNNNNNNGC	2 cut(s)	977, 1012
HpyF3I	CTNAG	3 cut(s)	46, 942, 1106
HpySE526I	ACGT	4 cut(s)	118, 771, 808, 911
Hsp92II	CATG	1 cut(s)	507
HspAI	GCGC	1 cut(s)	439
Kzo9I	GATC	5 cut(s)	70, 112, 202, 336, 1098
LmnI	GCTCC	2 cut(s)	194, 436
Lsp1109I	GCAGC	4 cut(s)	456, 958, 1024, 1098
LweI	GCATC	2 cut(s)	92, 843
MaeI	CTAG	6 cut(s)	108, 200, 308, 473, 737, 1073
MaeII	ACGT	4 cut(s)	118, 771, 808, 911
MaeIII	GTNAC	4 cut(s)	614, 754, 761, 788
MalI	GATC	5 cut(s)	72, 114, 204, 338, 1100
MboI	GATC	5 cut(s)	70, 112, 202, 336, 1098
MboII	GAAGA	3 cut(s)	417, 639, 814
MflI	RGATCY	2 cut(s)	202, 336
MhlI	GDGCHC	1 cut(s)	199
MluCI	AATT	5 cut(s)	25, 535, 692, 705, 861
MmeI	TCCRAC	1 cut(s)	679
MroXI	GAANNNNTTC	1 cut(s)	634
MseI	TTAA	4 cut(s)	221, 708, 828, 1164
MspA1I	CMGCKG	1 cut(s)	621
MspI	CCGG	2 cut(s)	92, 1007
MwoI	GCNNNNNNNGC	2 cut(s)	977, 1012
NdeII	GATC	5 cut(s)	70, 112, 202, 336, 1098
NlaIII	CATG	1 cut(s)	507
NlaIV	GGNNCC	1 cut(s)	730
NmuCI	GTSAC	3 cut(s)	754, 761, 788
NspV	TTCGAA	1 cut(s)	287
PdmI	GAANNNNTTC	1 cut(s)	634
PfeI	GAWTC	2 cut(s)	422, 635
PinAI	ACCGGT	1 cut(s)	91
PkrI	GCNGC	4 cut(s)	471, 973, 1014, 1113
PmaCI	CACGTG	1 cut(s)	809
PmlI	CACGTG	1 cut(s)	809
Ppu21I	YACGTR	1 cut(s)	809
PpuMI	RGGWCCY	1 cut(s)	177
PshAI	GACNNNNGTC	1 cut(s)	809
Psp124BI	GAGCTC	1 cut(s)	199
Psp5II	RGGWCCY	1 cut(s)	177
PspCI	CACGTG	1 cut(s)	809
PspEI	GGTNACC	1 cut(s)	788
PspFI	CCCAGC	2 cut(s)	15, 621
PspN4I	GGNNCC	1 cut(s)	730
PspPI	GGNCC	2 cut(s)	131, 177
PspPPI	RGGWCCY	1 cut(s)	177
PsrI	GAACNNNNNNTAC	2 cut(s)	235, 267
PstI	CTGCAG	1 cut(s)	1116
PstNI	CAGNNNCTG	1 cut(s)	180
PsuI	RGATCY	2 cut(s)	202, 336
PvuII	CAGCTG	1 cut(s)	621
RsaI	GTAC	3 cut(s)	121, 261, 744
RsaNI	GTAC	3 cut(s)	120, 260, 743
SacI	GAGCTC	1 cut(s)	199
SaqAI	TTAA	4 cut(s)	221, 708, 828, 1164
SatI	GCNGC	4 cut(s)	470, 972, 1013, 1112
Sau3AI	GATC	5 cut(s)	70, 112, 202, 336, 1098
Sau96I	GGNCC	2 cut(s)	131, 177
SduI	GDGCHC	1 cut(s)	199
SfaNI	GCATC	2 cut(s)	92, 843
SfcI	CTRYAG	2 cut(s)	429, 1112
SfuI	TTCGAA	1 cut(s)	287
SinI	GGWCC	2 cut(s)	131, 177
Sse9I	AATT	5 cut(s)	25, 535, 692, 705, 861
SsiI	CCGC	2 cut(s)	595, 651
SspMI	CTAG	6 cut(s)	108, 200, 308, 473, 737, 1073
SstI	GAGCTC	1 cut(s)	199
StyI	CCWWGG	1 cut(s)	271
TaaI	ACNGT	3 cut(s)	367, 544, 570
TaiI	ACGT	4 cut(s)	121, 774, 811, 914
TaqI	TCGA	3 cut(s)	115, 287, 690
TasI	AATT	5 cut(s)	25, 535, 692, 705, 861
TatI	WGTACW	1 cut(s)	259
TfiI	GAWTC	2 cut(s)	422, 635
Tru1I	TTAA	4 cut(s)	221, 708, 828, 1164
Tru9I	TTAA	4 cut(s)	221, 708, 828, 1164
TscAI	CASTG	1 cut(s)	306
TseFI	GTSAC	3 cut(s)	754, 761, 788
TseI	GCWGC	4 cut(s)	469, 971, 1012, 1111
Tsp45I	GTSAC	3 cut(s)	754, 761, 788
TspDTI	ATGAA	3 cut(s)	327, 342, 507
TspRI	CASTG	1 cut(s)	306
VpaK11BI	GGWCC	2 cut(s)	131, 177
XapI	RAATTY	1 cut(s)	692
XbaI	TCTAGA	1 cut(s)	199
XmiI	GTMKAC	2 cut(s)	11, 1132
XmnI	GAANNNNTTC	1 cut(s)	634
XspI	CTAG	6 cut(s)	108, 200, 308, 473, 737, 1073

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.