AT3G07990

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0004331
Physical Location & Seq
Forward (+)
2552394 .. 2554921
2528 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G07990.1

Sequence Viewer

Length: 1380 bp
ATGGATTACTCTTTCCTTCTAATCATTCTCTTACTCACAATCTCTACTTCATGTTGTGCTGCTCCTTCTTCTTATGTGGAAGAACAATTGAGAGACAGAATCAGTAACTTACCTGGACAACCTAGTAATGTCGATTTTAGACAGTACTCAGGCTATGTCACTGTGCATGAAGAACGTGGAAGAGCTTTGTTCTACTGGTTGGTCGAGTCTCCGTTGGCCCGTGACCCAAAGTCTAGACCTTTGGTTCTGTGGCTCAATGGTGGCCCTGGTTGTTCTTCTGTTGCTTATGGTGCTGCTGAAGAAATTGGACCTTTTCGTGTTGGTTCTGATGGCAAGACTCTTCATTCCAAACTTTATGCTTGGAATAAATTGGCAAACTTGCTATTCTTGGAGTCTCCAGCTGGAGTTGGTTTCTCATATTCAAACACAACTTCAGATCTTTACACAACCGGTGATCAGAGAACAGCTGAGGATTCGTACATATTTCTTGTCAACTGGTTTGAGAGGTTTCCACAATACAAGCATAGGGAGTTTTACATTGTTGGAGAAAGCTATGCAGGTCATTTTGTTCCTCAACTGTCTAAACTTGTCCATGAAAGGAACAAGGGCTTCAAGAACCCGGCTATAAACCTCAAAGGTTTTATGGTGGGAAATGCTGTTACAGATGACTATCATGATTATATAGGAACATTTGAATACTGGTGGAATCACGGTCTCATATCCGATTCCACGTATCACCAACTAAAGACCGCGTGCTACTCAGTATCATCTCAGCATCCTTCAATGCAGTGTATGGTGGCTCTGAGAAATGCCGAATTAGAGCAAGGAAATATCGATCCATATAGCATTTTCACCAAACCTTGCAACAGTACTGTGGCACTTAAGAGATTCTTAAAGGGTCGCTACCCATGGATGTCAAGAGCTTATGATCCTTGTACAGAGAGATATTCGAATGTGTATTTTAACCGCTTGGACGTTCAGAAGGCTCTCCACGCAAATGTCACTCGCTTATCTTACCCCTGGAAAGCATGCAGTGACATTGTAGGAAGCTATTGGGACGATTCTCCTCTGTCTATGCTTCCTATATACAAAGAATTGATTACTGCAGGTCTCAAAATATGGGTCTTCAGTGGGGATACAGATGCTGTTGTTCCTATAACCGCTACCCGATACTCTGTAGATGCACTGAAGCTAGCAACCATCACGAACTGGTACCCGTGGTACGACCATGGCAAGGTAGGTGGGTGGAGTCAAGTTTACAAAGGACTTACATTAGTGACAGTAGCAGGAGCTGGTCATGAAGTGCCTCTACACCGTCCCCGGCAAGCCTTTATTCTTTTCAGATCCTTTTTAGAGAGCAAACCAATGCCTATGACTTGA

Protein Analysis

459

Amino Acids

52.14

Weight (kDa)

8.0

Isoelectric Point (pI)

35.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 38 - 452 2.4e-147 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 548, 1097
Acc65I GGTACC 1 cut(s) 1212
AccB1I GGYRCC 1 cut(s) 1212
AccII CGCG 1 cut(s) 752
AciI CCGC 3 cut(s) 750, 967, 1161
AclWI GGATC 3 cut(s) 830, 923, 1338
AcuI CTGAAG 4 cut(s) 318, 417, 1111, 1208
AfaI GTAC 6 cut(s) 146, 479, 871, 937, 1214, 1223
AfiI CCNNNNNNNGG 1 cut(s) 1234
AflII CTTAAG 1 cut(s) 881
AgeI ACCGGT 1 cut(s) 449
AgsI TTSAA 4 cut(s) 423, 613, 695, 783
AhdI GACNNNNNGTC 1 cut(s) 229
AjnI CCWGG 3 cut(s) 112, 265, 1019
AluBI AGCT 8 cut(s) 185, 401, 467, 552, 923, 1050, 1192, 1292
AluI AGCT 8 cut(s) 185, 401, 467, 552, 923, 1050, 1192, 1292
Alw26I GTCTC 5 cut(s) 87, 213, 399, 719, 1115
AlwI GGATC 3 cut(s) 830, 923, 1338
AlwNI CAGNNNCTG 2 cut(s) 1145, 1292
AoxI GGCC 2 cut(s) 216, 262
ApeKI GCWGC 2 cut(s) 59, 293
ArsI GACNNNNNNTTYG 2 cut(s) 1107, 1139
AsiGI ACCGGT 1 cut(s) 449
Asp718I GGTACC 1 cut(s) 1212
AspS9I GGNCC 3 cut(s) 217, 263, 308
AsuC2I CCSGG 2 cut(s) 620, 1321
AsuHPI GGTGA 3 cut(s) 464, 728, 844
AsuII TTCGAA 1 cut(s) 950
AsuNHI GCTAGC 1 cut(s) 1192
AvaII GGWCC 1 cut(s) 308
BanI GGYRCC 1 cut(s) 1212
BarI GAAGNNNNNNTAC 2 cut(s) 1293, 1325
BbsI GAAGAC 1 cut(s) 1117
BbvCI CCTCAGC 1 cut(s) 468
BbvI GCAGC 2 cut(s) 46, 280
BccI CCATC 2 cut(s) 323, 1208
BciT130I CCWGG 3 cut(s) 114, 267, 1021
BciVI GTATCC 1 cut(s) 1129
BclI TGATCA 1 cut(s) 454
BcnI CCSGG 2 cut(s) 620, 1321
BcoDI GTCTC 5 cut(s) 87, 213, 399, 719, 1115
BfaI CTAG 3 cut(s) 123, 234, 1193
BfmI CTRYAG 2 cut(s) 1104, 1176
BfrI CTTAAG 1 cut(s) 881
BfuAI ACCTGC 2 cut(s) 548, 1097
BfuI GTATCC 1 cut(s) 1129
BglII AGATCT 1 cut(s) 436
BisI GCNGC 2 cut(s) 60, 294
BlsI GCNGC 2 cut(s) 61, 295
BmcAI AGTACT 2 cut(s) 146, 871
Bme1390I CCNGG 5 cut(s) 114, 267, 620, 1021, 1321
Bme18I GGWCC 1 cut(s) 308
BmeRI GACNNNNNGTC 1 cut(s) 229
BmgT120I GGNCC 3 cut(s) 217, 263, 308
BmiI GGNNCC 1 cut(s) 1214
BmrFI CCNGG 5 cut(s) 114, 267, 620, 1021, 1321
BmsI GCATC 3 cut(s) 784, 1132, 1171
BmtI GCTAGC 1 cut(s) 1196
BpiI GAAGAC 1 cut(s) 1117
BpmI CTGGAG 2 cut(s) 381, 423
Bpu10I CCTNAGC 1 cut(s) 468
Bpu14I TTCGAA 1 cut(s) 950
BpuMI CCSGG 2 cut(s) 620, 1321
Bsa29I ATCGAT 1 cut(s) 834
BsaAI YACGTR 1 cut(s) 732
BsaBI GATNNNNATC 1 cut(s) 669
BsaI GGTCTC 2 cut(s) 719, 1115
BsaJI CCNNGG 6 cut(s) 265, 908, 1019, 1217, 1228, 1319
BsaWI WCCGGW 1 cut(s) 449
Bsc4I CCNNNNNNNGG 1 cut(s) 1234
Bse118I RCCGGY 1 cut(s) 449
Bse1I ACTGG 4 cut(s) 200, 500, 704, 1214
Bse8I GATNNNNATC 1 cut(s) 669
BseBI CCWGG 3 cut(s) 114, 267, 1021
BseCI ATCGAT 1 cut(s) 834
BseDI CCNNGG 6 cut(s) 265, 908, 1019, 1217, 1228, 1319
BseGI GGATG 2 cut(s) 775, 918
BseJI GATNNNNATC 1 cut(s) 669
BseLI CCNNNNNNNGG 1 cut(s) 1234
BseMII CTCAG 5 cut(s) 162, 459, 774, 785, 794
BseNI ACTGG 4 cut(s) 200, 500, 704, 1214
BseRI GAGGAG 1 cut(s) 1056
BseXI GCAGC 2 cut(s) 46, 280
Bsh1236I CGCG 1 cut(s) 752
BshFI GGCC 2 cut(s) 218, 264
BshNI GGYRCC 1 cut(s) 1212
BshTI ACCGGT 1 cut(s) 449
BshVI ATCGAT 1 cut(s) 834
BsiSI CCGG 3 cut(s) 450, 620, 1321
BslFI GGGAC 2 cut(s) 1070, 1302
BslI CCNNNNNNNGG 1 cut(s) 1234
BsmAI GTCTC 5 cut(s) 87, 213, 399, 719, 1115
BsmFI GGGAC 2 cut(s) 1070, 1302
BsnI GGCC 2 cut(s) 218, 264
Bso31I GGTCTC 2 cut(s) 719, 1115
Bsp119I TTCGAA 1 cut(s) 950
Bsp1407I TGTACA 1 cut(s) 935
Bsp143I GATC 5 cut(s) 436, 454, 835, 928, 1343
Bsp19I CCATGG 2 cut(s) 908, 1228
BspACI CCGC 3 cut(s) 750, 967, 1161
BspANI GGCC 2 cut(s) 218, 264
BspCNI CTCAG 5 cut(s) 161, 460, 773, 784, 795
BspDI ATCGAT 1 cut(s) 834
BspFNI CGCG 1 cut(s) 752
BspHI TCATGA 2 cut(s) 673, 1297
BspLI GGNNCC 1 cut(s) 1214
BspMAI CTGCAG 1 cut(s) 1108
BspMI ACCTGC 2 cut(s) 548, 1097
BspOI GCTAGC 1 cut(s) 1196
BspPI GGATC 3 cut(s) 830, 923, 1338
BspQI GCTCTTC 1 cut(s) 175
BspT104I TTCGAA 1 cut(s) 950
BspT107I GGYRCC 1 cut(s) 1212
BspTI CTTAAG 1 cut(s) 881
BspTNI GGTCTC 2 cut(s) 719, 1115
BsrFI RCCGGY 1 cut(s) 449
BsrGI TGTACA 1 cut(s) 935
BsrI ACTGG 4 cut(s) 200, 500, 704, 1214
BssAI RCCGGY 1 cut(s) 449
BssECI CCNNGG 6 cut(s) 265, 908, 1019, 1217, 1228, 1319
BssMI GATC 5 cut(s) 436, 454, 835, 928, 1343
BssT1I CCWWGG 2 cut(s) 908, 1228
Bst2UI CCWGG 3 cut(s) 114, 267, 1021
Bst4CI ACNGT 8 cut(s) 144, 163, 579, 713, 869, 874, 1282, 1316
Bst6I CTCTTC 2 cut(s) 175, 345
BstAFI CTTAAG 1 cut(s) 881
BstAUI TGTACA 1 cut(s) 935
BstBAI YACGTR 1 cut(s) 732
BstBI TTCGAA 1 cut(s) 950
BstC8I GCNNGC 4 cut(s) 754, 1030, 1194, 1326
BstDEI CTNAG 5 cut(s) 148, 468, 760, 771, 803
BstDSI CCRYGG 3 cut(s) 908, 1217, 1228
BstF5I GGATG 2 cut(s) 775, 918
BstFNI CGCG 1 cut(s) 752
BstKTI GATC 5 cut(s) 439, 457, 838, 931, 1346
BstMAI GTCTC 5 cut(s) 87, 213, 399, 719, 1115
BstMBI GATC 5 cut(s) 436, 454, 835, 928, 1343
BstMWI GCNNNNNNNGC 2 cut(s) 290, 992
BstNI CCWGG 3 cut(s) 114, 267, 1021
BstNSI RCATGY 1 cut(s) 1032
BstSCI CCNGG 5 cut(s) 112, 265, 618, 1019, 1319
BstSFI CTRYAG 2 cut(s) 1104, 1176
BstUI CGCG 1 cut(s) 752
BstV1I GCAGC 2 cut(s) 46, 280
BstV2I GAAGAC 1 cut(s) 1117
BstX2I RGATCY 2 cut(s) 436, 1343
BstYI RGATCY 2 cut(s) 436, 1343
Bsu15I ATCGAT 1 cut(s) 834
BsuI GTATCC 1 cut(s) 1129
BsuRI GGCC 2 cut(s) 218, 264
BsuTUI ATCGAT 1 cut(s) 834
BtgI CCRYGG 3 cut(s) 908, 1217, 1228
BtsCI GGATG 2 cut(s) 775, 918
BtsI GCAGTG 2 cut(s) 794, 1039
BtsIMutI CAGTG 5 cut(s) 159, 794, 1039, 1135, 1184
BveI ACCTGC 2 cut(s) 548, 1097
Cac8I GCNNGC 4 cut(s) 754, 1030, 1194, 1326
CaiI CAGNNNCTG 2 cut(s) 1145, 1292
CciI TCATGA 2 cut(s) 673, 1297
Cfr10I RCCGGY 1 cut(s) 449
Cfr13I GGNCC 3 cut(s) 217, 263, 308
ClaI ATCGAT 1 cut(s) 834
Csp6I GTAC 6 cut(s) 145, 478, 870, 936, 1213, 1222
CspAI ACCGGT 1 cut(s) 449
CspCI CAANNNNNGTGG 2 cut(s) 1222, 1257
CviAII CATG 8 cut(s) 51, 167, 593, 674, 909, 1029, 1229, 1298
CviQI GTAC 6 cut(s) 145, 478, 870, 936, 1213, 1222
DdeI CTNAG 5 cut(s) 148, 468, 760, 771, 803
DpnI GATC 5 cut(s) 438, 456, 837, 930, 1345
DpnII GATC 5 cut(s) 436, 454, 835, 928, 1343
DriI GACNNNNNGTC 1 cut(s) 229
Eam1104I CTCTTC 2 cut(s) 175, 345
Eam1105I GACNNNNNGTC 1 cut(s) 229
EarI CTCTTC 2 cut(s) 175, 345
Eco130I CCWWGG 2 cut(s) 908, 1228
Eco31I GGTCTC 2 cut(s) 719, 1115
Eco47I GGWCC 1 cut(s) 308
Eco57I CTGAAG 4 cut(s) 318, 417, 1111, 1208
EcoRII CCWGG 3 cut(s) 112, 265, 1019
EcoT14I CCWWGG 2 cut(s) 908, 1228
ErhI CCWWGG 2 cut(s) 908, 1228
FaeI CATG 8 cut(s) 54, 170, 596, 677, 912, 1032, 1232, 1301
FalI AAGNNNNNCTT 2 cut(s) 875, 907
FaqI GGGAC 2 cut(s) 1070, 1302
FatI CATG 8 cut(s) 50, 166, 592, 673, 908, 1028, 1228, 1297
FbaI TGATCA 1 cut(s) 454
Fnu4HI GCNGC 2 cut(s) 60, 294
FokI GGATG 2 cut(s) 762, 925
Fsp4HI GCNGC 2 cut(s) 60, 294
FspBI CTAG 3 cut(s) 123, 234, 1193
GluI GCNGC 2 cut(s) 60, 294
GsuI CTGGAG 2 cut(s) 381, 423
HaeIII GGCC 2 cut(s) 218, 264
HapII CCGG 3 cut(s) 450, 620, 1321
Hin1II CATG 8 cut(s) 54, 170, 596, 677, 912, 1032, 1232, 1301
HincII GTYRAC 1 cut(s) 493
HindII GTYRAC 1 cut(s) 493
HpaII CCGG 3 cut(s) 450, 620, 1321
HphI GGTGA 3 cut(s) 464, 728, 844
Hpy166II GTNNAC 2 cut(s) 493, 1258
Hpy188I TCNGA 7 cut(s) 328, 436, 459, 724, 804, 981, 1343
Hpy188III TCNNGA 6 cut(s) 234, 613, 674, 918, 1204, 1298
Hpy8I GTNNAC 2 cut(s) 493, 1258
HpyAV CCTTC 4 cut(s) 26, 75, 789, 976
HpyCH4III ACNGT 8 cut(s) 144, 163, 579, 713, 869, 874, 1282, 1316
HpyCH4IV ACGT 3 cut(s) 175, 731, 975
HpyCH4V TGCA 7 cut(s) 166, 557, 787, 864, 1032, 1106, 1184
HpyF10VI GCNNNNNNNGC 2 cut(s) 290, 992
HpyF3I CTNAG 5 cut(s) 148, 468, 760, 771, 803
HpySE526I ACGT 3 cut(s) 175, 731, 975
Hsp92II CATG 8 cut(s) 54, 170, 596, 677, 912, 1032, 1232, 1301
KpnI GGTACC 1 cut(s) 1216
Ksp22I TGATCA 1 cut(s) 454
Kzo9I GATC 5 cut(s) 436, 454, 835, 928, 1343
LguI GCTCTTC 1 cut(s) 175
LmnI GCTCC 2 cut(s) 67, 1289
Lsp1109I GCAGC 2 cut(s) 46, 280
LweI GCATC 3 cut(s) 784, 1132, 1171
MaeI CTAG 3 cut(s) 123, 234, 1193
MaeII ACGT 3 cut(s) 175, 731, 975
MaeIII GTNAC 7 cut(s) 104, 157, 221, 658, 1000, 1034, 1276
MalI GATC 5 cut(s) 438, 456, 837, 930, 1345
MboI GATC 5 cut(s) 436, 454, 835, 928, 1343
MboII GAAGA 8 cut(s) 60, 92, 182, 192, 267, 311, 332, 1117
MfeI CAATTG 1 cut(s) 86
MflI RGATCY 2 cut(s) 436, 1343
MluCI AATT 5 cut(s) 86, 303, 368, 815, 1094
MlyI GAGTC 4 cut(s) 215, 331, 401, 1258
MmeI TCCRAC 1 cut(s) 523
MnlI CCTC 6 cut(s) 463, 498, 582, 641, 1077, 1317
MseI TTAA 3 cut(s) 882, 893, 963
MslI CAYNNNNRTG 1 cut(s) 996
MspA1I CMGCKG 2 cut(s) 401, 467
MspCI CTTAAG 1 cut(s) 881
MspI CCGG 3 cut(s) 450, 620, 1321
MspR9I CCNGG 5 cut(s) 114, 267, 620, 1021, 1321
MunI CAATTG 1 cut(s) 86
MvaI CCWGG 3 cut(s) 114, 267, 1021
MvnI CGCG 1 cut(s) 752
MwoI GCNNNNNNNGC 2 cut(s) 290, 992
NciI CCSGG 2 cut(s) 620, 1321
NcoI CCATGG 2 cut(s) 908, 1228
NdeII GATC 5 cut(s) 436, 454, 835, 928, 1343
NheI GCTAGC 1 cut(s) 1192
NlaIII CATG 8 cut(s) 54, 170, 596, 677, 912, 1032, 1232, 1301
NlaIV GGNNCC 1 cut(s) 1214
NmuCI GTSAC 5 cut(s) 157, 221, 1000, 1034, 1276
NspI RCATGY 1 cut(s) 1032
NspV TTCGAA 1 cut(s) 950
PaeI GCATGC 1 cut(s) 1032
PagI TCATGA 2 cut(s) 673, 1297
PciSI GCTCTTC 1 cut(s) 175
PfeI GAWTC 6 cut(s) 99, 473, 706, 725, 888, 1061
PinAI ACCGGT 1 cut(s) 449
PkrI GCNGC 2 cut(s) 61, 295
PleI GAGTC 4 cut(s) 214, 331, 400, 1257
PpsI GAGTC 4 cut(s) 214, 331, 400, 1257
Ppu21I YACGTR 1 cut(s) 732
Psp6I CCWGG 3 cut(s) 112, 265, 1019
PspGI CCWGG 3 cut(s) 112, 265, 1019
PspN4I GGNNCC 1 cut(s) 1214
PspPI GGNCC 3 cut(s) 217, 263, 308
PstI CTGCAG 1 cut(s) 1108
PstNI CAGNNNCTG 2 cut(s) 1145, 1292
PsuI RGATCY 2 cut(s) 436, 1343
PvuII CAGCTG 2 cut(s) 401, 467
RsaI GTAC 6 cut(s) 146, 479, 871, 937, 1214, 1223
RsaNI GTAC 6 cut(s) 145, 478, 870, 936, 1213, 1222
RseI CAYNNNNRTG 1 cut(s) 996
SapI GCTCTTC 1 cut(s) 175
SaqAI TTAA 3 cut(s) 882, 893, 963
SatI GCNGC 2 cut(s) 60, 294
Sau3AI GATC 5 cut(s) 436, 454, 835, 928, 1343
Sau96I GGNCC 3 cut(s) 217, 263, 308
ScaI AGTACT 2 cut(s) 146, 871
SchI GAGTC 4 cut(s) 215, 331, 401, 1258
ScrFI CCNGG 5 cut(s) 114, 267, 620, 1021, 1321
SfaNI GCATC 3 cut(s) 784, 1132, 1171
SfcI CTRYAG 2 cut(s) 1104, 1176
SfuI TTCGAA 1 cut(s) 950
SinI GGWCC 1 cut(s) 308
SmiMI CAYNNNNRTG 1 cut(s) 996
SmlI CTYRAG 1 cut(s) 881
SmoI CTYRAG 1 cut(s) 881
SphI GCATGC 1 cut(s) 1032
Sse9I AATT 5 cut(s) 86, 303, 368, 815, 1094
SsiI CCGC 3 cut(s) 750, 967, 1161
SspMI CTAG 3 cut(s) 123, 234, 1193
StyD4I CCNGG 5 cut(s) 112, 265, 618, 1019, 1319
StyI CCWWGG 2 cut(s) 908, 1228
TaaI ACNGT 8 cut(s) 144, 163, 579, 713, 869, 874, 1282, 1316
TaiI ACGT 3 cut(s) 178, 734, 978
TaqI TCGA 4 cut(s) 132, 204, 834, 950
TasI AATT 5 cut(s) 86, 303, 368, 815, 1094
TatI WGTACW 3 cut(s) 144, 869, 935
TfiI GAWTC 6 cut(s) 99, 473, 706, 725, 888, 1061
Tru1I TTAA 3 cut(s) 882, 893, 963
Tru9I TTAA 3 cut(s) 882, 893, 963
TscAI CASTG 5 cut(s) 166, 794, 1039, 1135, 1191
TseFI GTSAC 5 cut(s) 157, 221, 1000, 1034, 1276
TseI GCWGC 2 cut(s) 59, 293
Tsp45I GTSAC 5 cut(s) 157, 221, 1000, 1034, 1276
TspDTI ATGAA 5 cut(s) 39, 183, 332, 609, 1314
TspGWI ACGGA 1 cut(s) 201
TspRI CASTG 5 cut(s) 166, 794, 1039, 1135, 1191
Vha464I CTTAAG 1 cut(s) 881
VpaK11BI GGWCC 1 cut(s) 308
XbaI TCTAGA 1 cut(s) 233
XceI RCATGY 1 cut(s) 1032
XspI CTAG 3 cut(s) 123, 234, 1193
ZrmI AGTACT 2 cut(s) 146, 871
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.