Rroxscaffold_4G00292950

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0004331
Physical Location & Seq
Forward (+)
13187576 .. 13191830
4255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00292950.1

Sequence Viewer

Length: 1380 bp
ATGGGTTACCAAAACCCACTATTTGCATCTTTTTGCATTTTGCTACTTTCATTTGGAGCTTGTTTTGCTTCTTCTATTCAAGATCAAGTGAGGGATAGAATAACACAGTTGCCAGGGCAGCCAGCCAATGTGGGGTTTCGTCAGTATTCTGGTTATGTCACTGCCAATGAGCAAGCTGGGAGAGCATTGTTTTACTGGTTGGTTGAGTCCCCAGCGCATCGTGAACCGGAGTCCAGACCGCTAGTGTTGTGGCTCAATGGTGGTCCAGGTTGTTCTTCTGTTGCTTATGGTGCAGCTGAAGAGATTGGACCTTTTCATATTAGACCTGATGGAGAGACCCTTTACGTGAATCCATATGCTTGGAACAATTTGGCAAATTTGCTTTTCCTTGAATCTCCAGCTGGTGTTGGTTTTTCATACACGAATACGTCTTCAGATTTGTATACAGCTGGAGACCAGAGAACAGCTGAAGATGCGTATACATTTCTGGTCAATTGGTTTGAAAGGTTTCCTCAGTACAAGCACAGAGATTTCTACATTGCTGGAGAAAGTTATGCAGGTCATTATGTTCCTCAGCTGTCTCAATTGGTTTATGAGAGAAATAAGGGAATTCAGAATCCAGATATCAATTTTAAGGGGTTTATGGTAGGAAATGCTGTAACTGATGATTACCATGATTTTGTTGGCACATTCGAATACTGGTGGACACATGGTTTAATTTCTGATTCCACCTATCGTGAGCTGCGAGTCAAGTGTGACTTGGATGTCTCTCAGCATCCATCACTGGCTTGCATGGAGGCCCTCAAAGTAGCAGATTCAGAGCAGGGAAACATTGACCCTTACAGCATTTACACCCGTCCTTGTAGTAGTAGTACTGCAGCACTAAAGCGCAACTTGAGGGGTCATTATCCATGGATGTCCAGAGCATATGATCCATGCACTGAGAGGTATTCTGAAAAGTATTTTAACCATCCAGAAGTCCAAAAGGCACTCCATGCAAATGTAACTGGAGTGTCGTACCCATGGAGAACATGCAGTGATGTTGTTGGAAACTACTGGTCGGATTCTCCACGGTCTATGCTTCCAATTTATCAAGAGCTCATTGCTGCGGGTCTCAAGATATGGGTATTCAGTGGAGATACTGATGCAGTGGTTCCTGTGACTGCCACACGTTACTCCATAGACGCCCTTAAGTTACCGACCATCACCAATTGGTCCCCATGGTATGATACTGGCAAGGTTGGTGGCTGGAGCCAAATATACAAGGGGCTGACATTAGTCACCATTACCGGAGCTGGACATGAGGTCCCACTCCATCGACCTCGAGAAGCTTTCATTGTTTTCAGATCATTTTTGGAGAACAAGCCCATGCCTAGTTAA

Protein Analysis

459

Amino Acids

51.82

Weight (kDa)

5.75

Isoelectric Point (pI)

41.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 38 - 454 4.2e-149 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 764
Acc36I ACCTGC 1 cut(s) 548
AccI GTMKAC 2 cut(s) 443, 479
AciI CCGC 2 cut(s) 239, 1109
AclWI GGATC 1 cut(s) 926
AcsI RAATTY 2 cut(s) 376, 609
AcuI CTGAAG 3 cut(s) 318, 417, 489
AcyI GRCGYC 1 cut(s) 1185
AfaI GTAC 3 cut(s) 518, 874, 1019
AfiI CCNNNNNNNGG 1 cut(s) 132
AflII CTTAAG 1 cut(s) 1190
AflIII ACRYGT 1 cut(s) 1169
AgsI TTSAA 3 cut(s) 80, 392, 503
AhdI GACNNNNNGTC 1 cut(s) 1304
AjnI CCWGG 2 cut(s) 112, 265
Alw21I GWGCWC 1 cut(s) 1101
Alw26I GTCTC 5 cut(s) 329, 447, 585, 772, 1118
AlwI GGATC 1 cut(s) 926
Ama87I CYCGRG 1 cut(s) 1323
AoxI GGCC 1 cut(s) 798
ApeKI GCWGC 5 cut(s) 118, 293, 742, 878, 1106
ApoI RAATTY 2 cut(s) 376, 609
Asp700I GAANNNNTTC 1 cut(s) 507
AspLEI GCGC 2 cut(s) 217, 891
AspS9I GGNCC 5 cut(s) 263, 308, 799, 1215, 1306
AsuHPI GGTGA 2 cut(s) 1198, 1273
AsuII TTCGAA 1 cut(s) 693
AvaI CYCGRG 1 cut(s) 1323
AvaII GGWCC 4 cut(s) 263, 308, 1215, 1306
BanII GRGCYC 1 cut(s) 1101
BbsI GAAGAC 1 cut(s) 423
Bbv12I GWGCWC 1 cut(s) 1101
BbvCI CCTCAGC 1 cut(s) 573
BbvI GCAGC 5 cut(s) 130, 305, 729, 890, 1093
BccI CCATC 5 cut(s) 323, 787, 978, 1211, 1323
BciT130I CCWGG 2 cut(s) 114, 267
BcoDI GTCTC 5 cut(s) 329, 447, 585, 772, 1118
BfaI CTAG 2 cut(s) 242, 1374
BfmI CTRYAG 1 cut(s) 876
BfrI CTTAAG 1 cut(s) 1190
BfuAI ACCTGC 1 cut(s) 548
BisI GCNGC 5 cut(s) 119, 294, 743, 879, 1107
BlsI GCNGC 5 cut(s) 120, 295, 744, 880, 1108
BmcAI AGTACT 1 cut(s) 874
Bme1390I CCNGG 2 cut(s) 114, 267
Bme18I GGWCC 4 cut(s) 263, 308, 1215, 1306
BmeRI GACNNNNNGTC 1 cut(s) 1304
BmeT110I CYCGRG 1 cut(s) 1323
BmgT120I GGNCC 5 cut(s) 263, 308, 799, 1215, 1306
BmiI GGNNCC 4 cut(s) 1155, 1217, 1253, 1308
BmrFI CCNGG 2 cut(s) 114, 267
BmsI GCATC 5 cut(s) 35, 226, 463, 784, 1135
BoxI GACNNNNGTC 1 cut(s) 1277
BpiI GAAGAC 1 cut(s) 423
BpmI CTGGAG 5 cut(s) 381, 471, 564, 1029, 1270
Bpu10I CCTNAGC 1 cut(s) 573
Bpu14I TTCGAA 1 cut(s) 693
BpuEI CTTGAG 2 cut(s) 916, 1100
BsaAI YACGTR 1 cut(s) 346
BsaHI GRCGYC 1 cut(s) 1185
BsaI GGTCTC 3 cut(s) 329, 447, 1118
BsaJI CCNNGG 5 cut(s) 113, 911, 1022, 1070, 1220
BsaWI WCCGGW 2 cut(s) 226, 1289
Bsc4I CCNNNNNNNGG 1 cut(s) 132
Bse1I ACTGG 6 cut(s) 200, 704, 789, 1012, 1061, 1237
Bse3DI GCAATG 2 cut(s) 537, 1101
BseBI CCWGG 2 cut(s) 114, 267
BseDI CCNNGG 5 cut(s) 113, 911, 1022, 1070, 1220
BseGI GGATG 4 cut(s) 769, 775, 921, 970
BseLI CCNNNNNNNGG 1 cut(s) 132
BseMI GCAATG 2 cut(s) 537, 1101
BseMII CTCAG 4 cut(s) 527, 587, 785, 933
BseNI ACTGG 6 cut(s) 200, 704, 789, 1012, 1061, 1237
BseXI GCAGC 5 cut(s) 130, 305, 729, 890, 1093
BseYI CCCAGC 2 cut(s) 176, 211
BsgI GTGCAG 1 cut(s) 312
BshFI GGCC 1 cut(s) 800
BsiHKAI GWGCWC 1 cut(s) 1101
BsiHKCI CYCGRG 1 cut(s) 1323
BsiSI CCGG 2 cut(s) 227, 1290
BslFI GGGAC 3 cut(s) 193, 1201, 1292
BslI CCNNNNNNNGG 1 cut(s) 132
BsmAI GTCTC 5 cut(s) 329, 447, 585, 772, 1118
BsmFI GGGAC 3 cut(s) 193, 1201, 1292
BsnI GGCC 1 cut(s) 800
Bso31I GGTCTC 3 cut(s) 329, 447, 1118
BsoBI CYCGRG 1 cut(s) 1323
Bsp119I TTCGAA 1 cut(s) 693
Bsp1286I GDGCHC 1 cut(s) 1101
Bsp143I GATC 3 cut(s) 82, 931, 1346
Bsp19I CCATGG 3 cut(s) 911, 1022, 1220
BspACI CCGC 2 cut(s) 239, 1109
BspANI GGCC 1 cut(s) 800
BspCNI CTCAG 4 cut(s) 526, 586, 784, 934
BspLI GGNNCC 4 cut(s) 1155, 1217, 1253, 1308
BspMAI CTGCAG 1 cut(s) 880
BspMI ACCTGC 1 cut(s) 548
BspPI GGATC 1 cut(s) 926
BspT104I TTCGAA 1 cut(s) 693
BspTI CTTAAG 1 cut(s) 1190
BspTNI GGTCTC 3 cut(s) 329, 447, 1118
BsrDI GCAATG 2 cut(s) 537, 1101
BsrI ACTGG 6 cut(s) 200, 704, 789, 1012, 1061, 1237
BssECI CCNNGG 5 cut(s) 113, 911, 1022, 1070, 1220
BssMI GATC 3 cut(s) 82, 931, 1346
BssNAI GTATAC 2 cut(s) 444, 480
BssNI GRCGYC 1 cut(s) 1185
BssT1I CCWWGG 3 cut(s) 911, 1022, 1220
Bst1107I GTATAC 2 cut(s) 444, 480
Bst2UI CCWGG 2 cut(s) 114, 267
Bst4CI ACNGT 2 cut(s) 108, 1074
Bst6I CTCTTC 1 cut(s) 294
BstACI GRCGYC 1 cut(s) 1185
BstAFI CTTAAG 1 cut(s) 1190
BstAPI GCANNNNNTGC 1 cut(s) 995
BstBAI YACGTR 1 cut(s) 346
BstBI TTCGAA 1 cut(s) 693
BstC8I GCNNGC 3 cut(s) 123, 174, 790
BstDEI CTNAG 4 cut(s) 513, 573, 771, 942
BstDSI CCRYGG 4 cut(s) 911, 1022, 1070, 1220
BstEII GGTNACC 1 cut(s) 5
BstF5I GGATG 4 cut(s) 769, 775, 921, 970
BstHHI GCGC 2 cut(s) 217, 891
BstKTI GATC 3 cut(s) 85, 934, 1349
BstMAI GTCTC 5 cut(s) 329, 447, 585, 772, 1118
BstMBI GATC 3 cut(s) 82, 931, 1346
BstMWI GCNNNNNNNGC 6 cut(s) 65, 118, 182, 290, 473, 995
BstNI CCWGG 2 cut(s) 114, 267
BstNSI RCATGY 1 cut(s) 1035
BstPAI GACNNNNGTC 1 cut(s) 1277
BstPI GGTNACC 1 cut(s) 5
BstSCI CCNGG 2 cut(s) 112, 265
BstSFI CTRYAG 1 cut(s) 876
BstV1I GCAGC 5 cut(s) 130, 305, 729, 890, 1093
BstV2I GAAGAC 1 cut(s) 423
BstXI CCANNNNNNTGG 1 cut(s) 360
BstZ17I GTATAC 2 cut(s) 444, 480
BsuRI GGCC 1 cut(s) 800
BtgI CCRYGG 4 cut(s) 911, 1022, 1070, 1220
BtsCI GGATG 4 cut(s) 769, 775, 921, 970
BtsI GCAGTG 3 cut(s) 159, 1042, 1155
BtsIMutI CAGTG 6 cut(s) 159, 782, 939, 1042, 1138, 1155
BveI ACCTGC 1 cut(s) 548
Cac8I GCNNGC 3 cut(s) 123, 174, 790
CfoI GCGC 2 cut(s) 217, 891
Cfr13I GGNCC 5 cut(s) 263, 308, 799, 1215, 1306
CseI GACGC 1 cut(s) 1193
Csp6I GTAC 3 cut(s) 517, 873, 1018
CspCI CAANNNNNGTGG 2 cut(s) 1225, 1260
CviQI GTAC 3 cut(s) 517, 873, 1018
DdeI CTNAG 4 cut(s) 513, 573, 771, 942
DpnI GATC 3 cut(s) 84, 933, 1348
DpnII GATC 3 cut(s) 82, 931, 1346
DrdI GACNNNNNNGTC 1 cut(s) 764
DriI GACNNNNNGTC 1 cut(s) 1304
DseDI GACNNNNNNGTC 1 cut(s) 764
Eam1104I CTCTTC 1 cut(s) 294
Eam1105I GACNNNNNGTC 1 cut(s) 1304
EarI CTCTTC 1 cut(s) 294
Ecl136II GAGCTC 1 cut(s) 1099
Eco130I CCWWGG 3 cut(s) 911, 1022, 1220
Eco24I GRGCYC 1 cut(s) 1101
Eco31I GGTCTC 3 cut(s) 329, 447, 1118
Eco32I GATATC 1 cut(s) 625
Eco47I GGWCC 4 cut(s) 263, 308, 1215, 1306
Eco53kI GAGCTC 1 cut(s) 1099
Eco57I CTGAAG 3 cut(s) 318, 417, 489
Eco88I CYCGRG 1 cut(s) 1323
Eco91I GGTNACC 1 cut(s) 5
EcoICRI GAGCTC 1 cut(s) 1099
EcoO109I RGGNCCY 2 cut(s) 799, 1306
EcoO65I GGTNACC 1 cut(s) 5
EcoRI GAATTC 1 cut(s) 609
EcoRII CCWGG 2 cut(s) 112, 265
EcoRV GATATC 1 cut(s) 625
EcoT14I CCWWGG 3 cut(s) 911, 1022, 1220
EcoT38I GRGCYC 1 cut(s) 1101
ErhI CCWWGG 3 cut(s) 911, 1022, 1220
FalI AAGNNNNNCTT 4 cut(s) 743, 775, 878, 910
FaqI GGGAC 3 cut(s) 193, 1201, 1292
FauI CCCGC 1 cut(s) 1102
FauNDI CATATG 2 cut(s) 355, 928
FblI GTMKAC 2 cut(s) 443, 479
Fnu4HI GCNGC 5 cut(s) 119, 294, 743, 879, 1107
FokI GGATG 4 cut(s) 762, 776, 928, 957
FriOI GRGCYC 1 cut(s) 1101
Fsp4HI GCNGC 5 cut(s) 119, 294, 743, 879, 1107
FspBI CTAG 2 cut(s) 242, 1374
GlaI GCGC 2 cut(s) 216, 890
GluI GCNGC 5 cut(s) 119, 294, 743, 879, 1107
GsaI CCCAGC 2 cut(s) 180, 215
GsuI CTGGAG 5 cut(s) 381, 471, 564, 1029, 1270
HaeIII GGCC 1 cut(s) 800
HapII CCGG 2 cut(s) 227, 1290
HgaI GACGC 1 cut(s) 1193
HhaI GCGC 2 cut(s) 217, 891
Hin1I GRCGYC 1 cut(s) 1185
Hin6I GCGC 2 cut(s) 215, 889
HinP1I GCGC 2 cut(s) 215, 889
HindIII AAGCTT 1 cut(s) 1329
HinfI GANTC 9 cut(s) 206, 230, 349, 392, 616, 725, 747, 815, 1064
HpaII CCGG 2 cut(s) 227, 1290
HphI GGTGA 2 cut(s) 1198, 1273
Hpy166II GTNNAC 4 cut(s) 224, 444, 480, 705
Hpy188I TCNGA 7 cut(s) 436, 615, 724, 820, 955, 1063, 1346
Hpy8I GTNNAC 4 cut(s) 224, 444, 480, 705
HpyCH4III ACNGT 2 cut(s) 108, 1074
HpyCH4IV ACGT 3 cut(s) 345, 428, 1171
HpyF10VI GCNNNNNNNGC 6 cut(s) 65, 118, 182, 290, 473, 995
HpyF3I CTNAG 4 cut(s) 513, 573, 771, 942
HpySE526I ACGT 3 cut(s) 345, 428, 1171
Hsp92I GRCGYC 1 cut(s) 1185
HspAI GCGC 2 cut(s) 215, 889
Kzo9I GATC 3 cut(s) 82, 931, 1346
LmnI GCTCC 3 cut(s) 56, 1251, 1292
Lsp1109I GCAGC 5 cut(s) 130, 305, 729, 890, 1093
LweI GCATC 5 cut(s) 35, 226, 463, 784, 1135
MaeI CTAG 2 cut(s) 242, 1374
MaeII ACGT 3 cut(s) 345, 428, 1171
MaeIII GTNAC 9 cut(s) 5, 157, 658, 755, 1003, 1159, 1172, 1194, 1279
MalI GATC 3 cut(s) 84, 933, 1348
MboI GATC 3 cut(s) 82, 931, 1346
MboII GAAGA 5 cut(s) 63, 267, 311, 423, 482
MfeI CAATTG 3 cut(s) 493, 584, 1210
MhlI GDGCHC 1 cut(s) 1101
MluCI AATT 9 cut(s) 367, 376, 493, 584, 609, 628, 717, 1086, 1210
MlyI GAGTC 3 cut(s) 215, 239, 756
MmeI TCCRAC 2 cut(s) 1027, 1041
MnlI CCTC 9 cut(s) 84, 522, 582, 790, 812, 891, 939, 1297, 1332
MroXI GAANNNNTTC 1 cut(s) 507
MseI TTAA 5 cut(s) 633, 716, 966, 1191, 1378
MslI CAYNNNNRTG 1 cut(s) 999
MspA1I CMGCKG 5 cut(s) 296, 401, 449, 467, 577
MspCI CTTAAG 1 cut(s) 1190
MspI CCGG 2 cut(s) 227, 1290
MspR9I CCNGG 2 cut(s) 114, 267
MunI CAATTG 3 cut(s) 493, 584, 1210
MvaI CCWGG 2 cut(s) 114, 267
MwoI GCNNNNNNNGC 6 cut(s) 65, 118, 182, 290, 473, 995
NcoI CCATGG 3 cut(s) 911, 1022, 1220
NdeI CATATG 2 cut(s) 355, 928
NdeII GATC 3 cut(s) 82, 931, 1346
NlaIV GGNNCC 4 cut(s) 1155, 1217, 1253, 1308
NmuCI GTSAC 4 cut(s) 157, 755, 1159, 1279
NspI RCATGY 1 cut(s) 1035
NspV TTCGAA 1 cut(s) 693
PaeR7I CTCGAG 1 cut(s) 1323
PcsI WCGNNNNNNNCGW 1 cut(s) 742
PdmI GAANNNNTTC 1 cut(s) 507
PfeI GAWTC 6 cut(s) 349, 392, 616, 725, 815, 1064
PkrI GCNGC 5 cut(s) 120, 295, 744, 880, 1108
PleI GAGTC 3 cut(s) 214, 238, 755
PpsI GAGTC 3 cut(s) 214, 238, 755
Ppu21I YACGTR 1 cut(s) 346
PpuMI RGGWCCY 1 cut(s) 1306
PshAI GACNNNNGTC 1 cut(s) 1277
Psp124BI GAGCTC 1 cut(s) 1101
Psp5II RGGWCCY 1 cut(s) 1306
Psp6I CCWGG 2 cut(s) 112, 265
PspEI GGTNACC 1 cut(s) 5
PspFI CCCAGC 2 cut(s) 176, 211
PspGI CCWGG 2 cut(s) 112, 265
PspN4I GGNNCC 4 cut(s) 1155, 1217, 1253, 1308
PspPI GGNCC 5 cut(s) 263, 308, 799, 1215, 1306
PspPPI RGGWCCY 1 cut(s) 1306
PstI CTGCAG 1 cut(s) 880
PvuII CAGCTG 5 cut(s) 296, 401, 449, 467, 577
RsaI GTAC 3 cut(s) 518, 874, 1019
RsaNI GTAC 3 cut(s) 517, 873, 1018
RseI CAYNNNNRTG 1 cut(s) 999
SacI GAGCTC 1 cut(s) 1101
SaqAI TTAA 5 cut(s) 633, 716, 966, 1191, 1378
SatI GCNGC 5 cut(s) 119, 294, 743, 879, 1107
Sau3AI GATC 3 cut(s) 82, 931, 1346
Sau96I GGNCC 5 cut(s) 263, 308, 799, 1215, 1306
ScaI AGTACT 1 cut(s) 874
SchI GAGTC 3 cut(s) 215, 239, 756
ScrFI CCNGG 2 cut(s) 114, 267
SduI GDGCHC 1 cut(s) 1101
SfaNI GCATC 5 cut(s) 35, 226, 463, 784, 1135
SfcI CTRYAG 1 cut(s) 876
Sfr274I CTCGAG 1 cut(s) 1323
SfuI TTCGAA 1 cut(s) 693
SinI GGWCC 4 cut(s) 263, 308, 1215, 1306
SlaI CTCGAG 1 cut(s) 1323
SmiMI CAYNNNNRTG 1 cut(s) 999
SmlI CTYRAG 4 cut(s) 895, 1115, 1190, 1323
SmoI CTYRAG 4 cut(s) 895, 1115, 1190, 1323
Sse9I AATT 9 cut(s) 367, 376, 493, 584, 609, 628, 717, 1086, 1210
SsiI CCGC 2 cut(s) 239, 1109
SspMI CTAG 2 cut(s) 242, 1374
SstI GAGCTC 1 cut(s) 1101
StyD4I CCNGG 2 cut(s) 112, 265
StyI CCWWGG 3 cut(s) 911, 1022, 1220
TaaI ACNGT 2 cut(s) 108, 1074
TaiI ACGT 3 cut(s) 348, 431, 1174
TaqI TCGA 3 cut(s) 693, 1318, 1324
TasI AATT 9 cut(s) 367, 376, 493, 584, 609, 628, 717, 1086, 1210
TatI WGTACW 2 cut(s) 516, 872
TfiI GAWTC 6 cut(s) 349, 392, 616, 725, 815, 1064
Tru1I TTAA 5 cut(s) 633, 716, 966, 1191, 1378
Tru9I TTAA 5 cut(s) 633, 716, 966, 1191, 1378
TscAI CASTG 6 cut(s) 166, 789, 946, 1042, 1138, 1155
TseFI GTSAC 4 cut(s) 157, 755, 1159, 1279
TseI GCWGC 5 cut(s) 118, 293, 742, 878, 1106
Tsp45I GTSAC 4 cut(s) 157, 755, 1159, 1279
TspDTI ATGAA 4 cut(s) 39, 305, 405, 1324
TspRI CASTG 6 cut(s) 166, 789, 946, 1042, 1138, 1155
Vha464I CTTAAG 1 cut(s) 1190
VpaK11BI GGWCC 4 cut(s) 263, 308, 1215, 1306
XapI RAATTY 2 cut(s) 376, 609
XceI RCATGY 1 cut(s) 1035
XcmI CCANNNNNNNNNTGG 1 cut(s) 680
XhoI CTCGAG 1 cut(s) 1323
XmiI GTMKAC 2 cut(s) 443, 479
XmnI GAANNNNTTC 1 cut(s) 507
XspI CTAG 2 cut(s) 242, 1374
ZrmI AGTACT 1 cut(s) 874
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.