FvH4_7g19840

Belongs to the peptidase S10 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
16279655 .. 16284997
5343 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g19840.t2

Sequence Viewer

Length: 1350 bp
ATGGGTTACCAAAACTCTCTATTTGCATCTGTCTGCATTTTGCTACTTTCATTCGGAGCTTGTTTTGCTTCTTCTATTCAAGATCAAGTGAGGGATAGAATAACACAGTTGCCAGGGCAGCCAGCCAATGTGGGGTTTCGTCAGTATTCTGGTTATGTCACTGCCAATAAGCAAGCTGGGAGAGCATTGTTTTACTGGTTGGTTGAGTCCCCAGCGCAGCGTGGACCGGAGTCCAGACCGCTAGTGTTGTGGCTCAATGGTGGTCCAGGTTGCTCTTCTGTTGCTTATGGAGCAGCTGAAGAGATTGGACCTTTTCATATTAGACCTGATGGGAAGACCCTTTACTTGAATCCATATGCTTGGAACAATTTGGCAAATTTGCTTTTCCTTGAATCGCCAGCTGGTGTTGGATTTTCATATAGCAATACATCTTCAGATTTGTATACAGCTGGGGACCAGAGAACAGCTGAAGATGCATATACATTTCTGGTCAATTGGTTCGAAAGGTTTCCTCAGTACAAGCACAGAAATTTCTACATTGCTGGAGAAAGTTATGCAGGTCATTATGTTCCTCAGCTGTCTCAATTGGTTTATGAGAGAAATAAGGGAATTAAGAATCCAGATATCAATTTTAAGGGGTTTTTGGTAGGAAATGCTGTGACCGATGATTACCATGATTTTATTGGCACATTCGAATACTGGTGGACACATGGTTTAATTTCTGATTCCACCTATCGGGAACTGCGAGTTAAGTGTGACTTGGAAGTCTCTCAGCATCCATCACTGGCTTGCATGGAGGCCCTCAAACTAGCAGATTCAGAGCAAGGAAACATTGACCCTTACAGCATTTTCACCCGTCCTTGTAGTAGTGCTGCAGCACTGAAGCGCAACTTGAGGGGTCATTATCCATGGATGTCCAGAGCATATGATCCATGCACTGAGAGGTATTCTGAAAAGTATTTCAACCATCCAGAAGTTCAAAAGGCACTTCATGCAAATGTAACTGGACTTTCATACCCATGGAAAACATGCAGTGATTTTGTTGGAAACTACTGGTCGGATTCTCCACGGTCTATGCTTCCAATTTATCAAGAGCTTATTGCTGCTGGTCTCAAGATATGGGTCTACAGCGGAGATACTGATGCAGTGGTTCCTGTTACTGCCACGCGTTACTCCATTGACGCCCTTAAGTTACCGACCATCAACAACTGGTCCCCATGGTCCGATTCCGGCAAGGTTGGTGGCTGGAGCCAAATATACAAGGGGCTGACATTAGTTACCATCACCGGAGCTGGACATGAGCCCAAACACCTGGAATTTGCAACCATTTTTCATATACAAACGCCATGA

Protein Analysis

450

Amino Acids

50.46

Weight (kDa)

6.31

Isoelectric Point (pI)

41.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 38 - 453 3.7e-148 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 764
Acc36I ACCTGC 1 cut(s) 548
AccI GTMKAC 2 cut(s) 443, 1125
AccII CGCG 1 cut(s) 1168
AciI CCGC 2 cut(s) 239, 1131
AclWI GGATC 1 cut(s) 923
AcsI RAATTY 3 cut(s) 376, 529, 1316
AcuI CTGAAG 4 cut(s) 318, 417, 489, 902
AcyI GRCGYC 1 cut(s) 1182
AfaI GTAC 1 cut(s) 518
AfiI CCNNNNNNNGG 2 cut(s) 132, 735
AflII CTTAAG 1 cut(s) 1187
AflIII ACRYGT 1 cut(s) 1166
AgsI TTSAA 5 cut(s) 80, 349, 392, 964, 980
AjnI CCWGG 3 cut(s) 112, 265, 1311
AluBI AGCT 9 cut(s) 59, 176, 296, 401, 449, 467, 577, 1096, 1292
AluI AGCT 9 cut(s) 59, 176, 296, 401, 449, 467, 577, 1096, 1292
Alw26I GTCTC 3 cut(s) 585, 772, 1115
AlwI GGATC 1 cut(s) 923
AoxI GGCC 1 cut(s) 798
ApeKI GCWGC 6 cut(s) 118, 217, 293, 872, 875, 1103
ApoI RAATTY 3 cut(s) 376, 529, 1316
Asp700I GAANNNNTTC 1 cut(s) 507
AspLEI GCGC 2 cut(s) 217, 888
AspS9I GGNCC 7 cut(s) 224, 263, 308, 454, 799, 1212, 1221
AsuHPI GGTGA 2 cut(s) 844, 1276
AsuII TTCGAA 2 cut(s) 501, 693
AvaII GGWCC 6 cut(s) 224, 263, 308, 454, 1212, 1221
BanII GRGCYC 1 cut(s) 1305
BarI GAAGNNNNNNTAC 2 cut(s) 326, 358
BbsI GAAGAC 1 cut(s) 341
BbvCI CCTCAGC 1 cut(s) 573
BbvI GCAGC 6 cut(s) 130, 229, 305, 859, 887, 1090
BccI CCATC 5 cut(s) 323, 787, 975, 1208, 1289
BciT130I CCWGG 3 cut(s) 114, 267, 1313
BcoDI GTCTC 3 cut(s) 585, 772, 1115
BfaI CTAG 2 cut(s) 242, 809
BfmI CTRYAG 2 cut(s) 873, 1126
BfrI CTTAAG 1 cut(s) 1187
BfuAI ACCTGC 1 cut(s) 548
BisI GCNGC 6 cut(s) 119, 218, 294, 873, 876, 1104
BlsI GCNGC 6 cut(s) 120, 219, 295, 874, 877, 1105
Bme1390I CCNGG 3 cut(s) 114, 267, 1313
Bme18I GGWCC 6 cut(s) 224, 263, 308, 454, 1212, 1221
BmgT120I GGNCC 7 cut(s) 224, 263, 308, 454, 799, 1212, 1221
BmiI GGNNCC 4 cut(s) 455, 1152, 1214, 1250
BmrFI CCNGG 3 cut(s) 114, 267, 1313
BmsI GCATC 4 cut(s) 35, 463, 784, 1132
BoxI GACNNNNGTC 1 cut(s) 229
BpiI GAAGAC 1 cut(s) 341
BpmI CTGGAG 2 cut(s) 564, 1267
Bpu10I CCTNAGC 1 cut(s) 573
Bpu14I TTCGAA 2 cut(s) 501, 693
BpuEI CTTGAG 2 cut(s) 913, 1097
BsaHI GRCGYC 1 cut(s) 1182
BsaI GGTCTC 1 cut(s) 1115
BsaJI CCNNGG 5 cut(s) 113, 908, 1019, 1067, 1217
BsaWI WCCGGW 2 cut(s) 226, 1286
Bsc4I CCNNNNNNNGG 2 cut(s) 132, 735
Bse1I ACTGG 6 cut(s) 200, 704, 789, 1009, 1058, 1214
Bse3DI GCAATG 1 cut(s) 537
BseBI CCWGG 3 cut(s) 114, 267, 1313
BseDI CCNNGG 5 cut(s) 113, 908, 1019, 1067, 1217
BseGI GGATG 3 cut(s) 775, 918, 967
BseLI CCNNNNNNNGG 2 cut(s) 132, 735
BseMI GCAATG 1 cut(s) 537
BseMII CTCAG 4 cut(s) 527, 587, 785, 930
BseNI ACTGG 6 cut(s) 200, 704, 789, 1009, 1058, 1214
BseXI GCAGC 6 cut(s) 130, 229, 305, 859, 887, 1090
BseYI CCCAGC 3 cut(s) 176, 211, 449
Bsh1236I CGCG 1 cut(s) 1168
BshFI GGCC 1 cut(s) 800
BsiSI CCGG 3 cut(s) 227, 1230, 1287
BslFI GGGAC 3 cut(s) 193, 467, 1198
BslI CCNNNNNNNGG 2 cut(s) 132, 735
BsmAI GTCTC 3 cut(s) 585, 772, 1115
BsmFI GGGAC 3 cut(s) 193, 467, 1198
BsnI GGCC 1 cut(s) 800
Bso31I GGTCTC 1 cut(s) 1115
Bsp119I TTCGAA 2 cut(s) 501, 693
Bsp1286I GDGCHC 1 cut(s) 1305
Bsp143I GATC 2 cut(s) 82, 928
Bsp19I CCATGG 3 cut(s) 908, 1019, 1217
BspACI CCGC 2 cut(s) 239, 1131
BspANI GGCC 1 cut(s) 800
BspCNI CTCAG 4 cut(s) 526, 586, 784, 931
BspFNI CGCG 1 cut(s) 1168
BspLI GGNNCC 4 cut(s) 455, 1152, 1214, 1250
BspMAI CTGCAG 1 cut(s) 877
BspMI ACCTGC 1 cut(s) 548
BspPI GGATC 1 cut(s) 923
BspQI GCTCTTC 1 cut(s) 280
BspT104I TTCGAA 2 cut(s) 501, 693
BspTI CTTAAG 1 cut(s) 1187
BspTNI GGTCTC 1 cut(s) 1115
BsrDI GCAATG 1 cut(s) 537
BsrI ACTGG 6 cut(s) 200, 704, 789, 1009, 1058, 1214
BssECI CCNNGG 5 cut(s) 113, 908, 1019, 1067, 1217
BssMI GATC 2 cut(s) 82, 928
BssNAI GTATAC 1 cut(s) 444
BssNI GRCGYC 1 cut(s) 1182
BssT1I CCWWGG 3 cut(s) 908, 1019, 1217
Bst1107I GTATAC 1 cut(s) 444
Bst2UI CCWGG 3 cut(s) 114, 267, 1313
Bst4CI ACNGT 2 cut(s) 108, 1071
Bst6I CTCTTC 2 cut(s) 280, 294
BstACI GRCGYC 1 cut(s) 1182
BstAFI CTTAAG 1 cut(s) 1187
BstAPI GCANNNNNTGC 1 cut(s) 992
BstBI TTCGAA 2 cut(s) 501, 693
BstC8I GCNNGC 4 cut(s) 123, 174, 399, 790
BstDEI CTNAG 4 cut(s) 513, 573, 771, 939
BstDSI CCRYGG 4 cut(s) 908, 1019, 1067, 1217
BstEII GGTNACC 1 cut(s) 5
BstF5I GGATG 3 cut(s) 775, 918, 967
BstFNI CGCG 1 cut(s) 1168
BstHHI GCGC 2 cut(s) 217, 888
BstKTI GATC 2 cut(s) 85, 931
BstMAI GTCTC 3 cut(s) 585, 772, 1115
BstMBI GATC 2 cut(s) 82, 928
BstMWI GCNNNNNNNGC 6 cut(s) 65, 118, 182, 290, 473, 992
BstNI CCWGG 3 cut(s) 114, 267, 1313
BstNSI RCATGY 1 cut(s) 1032
BstPAI GACNNNNGTC 1 cut(s) 229
BstPI GGTNACC 1 cut(s) 5
BstSCI CCNGG 3 cut(s) 112, 265, 1311
BstSFI CTRYAG 2 cut(s) 873, 1126
BstUI CGCG 1 cut(s) 1168
BstV1I GCAGC 6 cut(s) 130, 229, 305, 859, 887, 1090
BstV2I GAAGAC 1 cut(s) 341
BstXI CCANNNNNNTGG 2 cut(s) 360, 1312
BstZ17I GTATAC 1 cut(s) 444
BsuRI GGCC 1 cut(s) 800
BtgI CCRYGG 4 cut(s) 908, 1019, 1067, 1217
BtsCI GGATG 3 cut(s) 775, 918, 967
BtsI GCAGTG 3 cut(s) 159, 1039, 1152
BtsIMutI CAGTG 6 cut(s) 159, 782, 878, 936, 1039, 1152
BveI ACCTGC 1 cut(s) 548
Cac8I GCNNGC 4 cut(s) 123, 174, 399, 790
CfoI GCGC 2 cut(s) 217, 888
Cfr13I GGNCC 7 cut(s) 224, 263, 308, 454, 799, 1212, 1221
CseI GACGC 1 cut(s) 1190
Csp6I GTAC 1 cut(s) 517
CspCI CAANNNNNGTGG 2 cut(s) 1222, 1257
CviQI GTAC 1 cut(s) 517
DdeI CTNAG 4 cut(s) 513, 573, 771, 939
DpnI GATC 2 cut(s) 84, 930
DpnII GATC 2 cut(s) 82, 928
DrdI GACNNNNNNGTC 1 cut(s) 764
DseDI GACNNNNNNGTC 1 cut(s) 764
Eam1104I CTCTTC 2 cut(s) 280, 294
EarI CTCTTC 2 cut(s) 280, 294
Eco130I CCWWGG 3 cut(s) 908, 1019, 1217
Eco24I GRGCYC 1 cut(s) 1305
Eco31I GGTCTC 1 cut(s) 1115
Eco32I GATATC 1 cut(s) 625
Eco47I GGWCC 6 cut(s) 224, 263, 308, 454, 1212, 1221
Eco57I CTGAAG 4 cut(s) 318, 417, 489, 902
Eco91I GGTNACC 1 cut(s) 5
EcoO109I RGGNCCY 1 cut(s) 799
EcoO65I GGTNACC 1 cut(s) 5
EcoRII CCWGG 3 cut(s) 112, 265, 1311
EcoRV GATATC 1 cut(s) 625
EcoT14I CCWWGG 3 cut(s) 908, 1019, 1217
EcoT22I ATGCAT 1 cut(s) 478
EcoT38I GRGCYC 1 cut(s) 1305
ErhI CCWWGG 3 cut(s) 908, 1019, 1217
FalI AAGNNNNNCTT 4 cut(s) 743, 775, 875, 907
FaqI GGGAC 3 cut(s) 193, 467, 1198
FauNDI CATATG 2 cut(s) 355, 925
FblI GTMKAC 2 cut(s) 443, 1125
Fnu4HI GCNGC 6 cut(s) 119, 218, 294, 873, 876, 1104
FokI GGATG 3 cut(s) 762, 925, 954
FriOI GRGCYC 1 cut(s) 1305
Fsp4HI GCNGC 6 cut(s) 119, 218, 294, 873, 876, 1104
FspBI CTAG 2 cut(s) 242, 809
GlaI GCGC 2 cut(s) 216, 887
GluI GCNGC 6 cut(s) 119, 218, 294, 873, 876, 1104
GsaI CCCAGC 3 cut(s) 180, 215, 453
GsuI CTGGAG 2 cut(s) 564, 1267
HaeIII GGCC 1 cut(s) 800
HapII CCGG 3 cut(s) 227, 1230, 1287
HgaI GACGC 1 cut(s) 1190
HhaI GCGC 2 cut(s) 217, 888
Hin1I GRCGYC 1 cut(s) 1182
Hin6I GCGC 2 cut(s) 215, 886
HinP1I GCGC 2 cut(s) 215, 886
HinfI GANTC 9 cut(s) 206, 230, 349, 392, 616, 725, 815, 1061, 1226
HpaII CCGG 3 cut(s) 227, 1230, 1287
HphI GGTGA 2 cut(s) 844, 1276
Hpy166II GTNNAC 4 cut(s) 224, 444, 705, 1126
Hpy188I TCNGA 7 cut(s) 56, 436, 724, 820, 952, 1060, 1225
Hpy188III TCNNGA 8 cut(s) 80, 234, 620, 737, 918, 971, 1091, 1114
Hpy8I GTNNAC 4 cut(s) 224, 444, 705, 1126
HpyCH4III ACNGT 2 cut(s) 108, 1071
HpyF10VI GCNNNNNNNGC 6 cut(s) 65, 118, 182, 290, 473, 992
HpyF3I CTNAG 4 cut(s) 513, 573, 771, 939
Hsp92I GRCGYC 1 cut(s) 1182
HspAI GCGC 2 cut(s) 215, 886
Kzo9I GATC 2 cut(s) 82, 928
LguI GCTCTTC 1 cut(s) 280
LmnI GCTCC 4 cut(s) 56, 290, 1248, 1289
Lsp1109I GCAGC 6 cut(s) 130, 229, 305, 859, 887, 1090
LweI GCATC 4 cut(s) 35, 463, 784, 1132
MaeI CTAG 2 cut(s) 242, 809
MaeIII GTNAC 9 cut(s) 5, 157, 658, 755, 1000, 1156, 1169, 1191, 1276
MalI GATC 2 cut(s) 84, 930
MboI GATC 2 cut(s) 82, 928
MboII GAAGA 6 cut(s) 63, 267, 311, 346, 423, 482
MfeI CAATTG 2 cut(s) 493, 584
MhlI GDGCHC 1 cut(s) 1305
MluI ACGCGT 1 cut(s) 1166
MlyI GAGTC 2 cut(s) 215, 239
MmeI TCCRAC 3 cut(s) 388, 1024, 1038
MnlI CCTC 7 cut(s) 84, 522, 582, 790, 812, 888, 936
Mph1103I ATGCAT 1 cut(s) 478
MroXI GAANNNNTTC 1 cut(s) 507
MseI TTAA 5 cut(s) 612, 633, 716, 750, 1188
MslI CAYNNNNRTG 2 cut(s) 996, 1018
MspA1I CMGCKG 6 cut(s) 296, 401, 449, 467, 577, 1131
MspCI CTTAAG 1 cut(s) 1187
MspI CCGG 3 cut(s) 227, 1230, 1287
MspR9I CCNGG 3 cut(s) 114, 267, 1313
MunI CAATTG 2 cut(s) 493, 584
MvaI CCWGG 3 cut(s) 114, 267, 1313
MvnI CGCG 1 cut(s) 1168
MwoI GCNNNNNNNGC 6 cut(s) 65, 118, 182, 290, 473, 992
NcoI CCATGG 3 cut(s) 908, 1019, 1217
NdeI CATATG 2 cut(s) 355, 925
NdeII GATC 2 cut(s) 82, 928
NlaIV GGNNCC 4 cut(s) 455, 1152, 1214, 1250
NmuCI GTSAC 3 cut(s) 157, 658, 755
NsiI ATGCAT 1 cut(s) 478
NspI RCATGY 1 cut(s) 1032
NspV TTCGAA 2 cut(s) 501, 693
PciSI GCTCTTC 1 cut(s) 280
PcsI WCGNNNNNNNCGW 1 cut(s) 742
PdmI GAANNNNTTC 1 cut(s) 507
PfeI GAWTC 7 cut(s) 349, 392, 616, 725, 815, 1061, 1226
PkrI GCNGC 6 cut(s) 120, 219, 295, 874, 877, 1105
PleI GAGTC 2 cut(s) 214, 238
PpsI GAGTC 2 cut(s) 214, 238
PshAI GACNNNNGTC 1 cut(s) 229
Psp6I CCWGG 3 cut(s) 112, 265, 1311
PspEI GGTNACC 1 cut(s) 5
PspFI CCCAGC 3 cut(s) 176, 211, 449
PspGI CCWGG 3 cut(s) 112, 265, 1311
PspN4I GGNNCC 4 cut(s) 455, 1152, 1214, 1250
PspPI GGNCC 7 cut(s) 224, 263, 308, 454, 799, 1212, 1221
PstI CTGCAG 1 cut(s) 877
PvuII CAGCTG 5 cut(s) 296, 401, 449, 467, 577
RsaI GTAC 1 cut(s) 518
RsaNI GTAC 1 cut(s) 517
RseI CAYNNNNRTG 2 cut(s) 996, 1018
SapI GCTCTTC 1 cut(s) 280
SaqAI TTAA 5 cut(s) 612, 633, 716, 750, 1188
SatI GCNGC 6 cut(s) 119, 218, 294, 873, 876, 1104
Sau3AI GATC 2 cut(s) 82, 928
Sau96I GGNCC 7 cut(s) 224, 263, 308, 454, 799, 1212, 1221
SchI GAGTC 2 cut(s) 215, 239
ScrFI CCNGG 3 cut(s) 114, 267, 1313
SduI GDGCHC 1 cut(s) 1305
SfaNI GCATC 4 cut(s) 35, 463, 784, 1132
SfcI CTRYAG 2 cut(s) 873, 1126
SfuI TTCGAA 2 cut(s) 501, 693
SinI GGWCC 6 cut(s) 224, 263, 308, 454, 1212, 1221
SmiMI CAYNNNNRTG 2 cut(s) 996, 1018
SmlI CTYRAG 3 cut(s) 892, 1112, 1187
SmoI CTYRAG 3 cut(s) 892, 1112, 1187
SsiI CCGC 2 cut(s) 239, 1131
SspMI CTAG 2 cut(s) 242, 809
StyD4I CCNGG 3 cut(s) 112, 265, 1311
StyI CCWWGG 3 cut(s) 908, 1019, 1217
TaaI ACNGT 2 cut(s) 108, 1071
TaqI TCGA 2 cut(s) 501, 693
TaqII GACCGA 1 cut(s) 677
TatI WGTACW 1 cut(s) 516
TfiI GAWTC 7 cut(s) 349, 392, 616, 725, 815, 1061, 1226
Tru1I TTAA 5 cut(s) 612, 633, 716, 750, 1188
Tru9I TTAA 5 cut(s) 612, 633, 716, 750, 1188
TscAI CASTG 6 cut(s) 166, 789, 885, 943, 1039, 1152
TseFI GTSAC 3 cut(s) 157, 658, 755
TseI GCWGC 6 cut(s) 118, 217, 293, 872, 875, 1103
Tsp45I GTSAC 3 cut(s) 157, 658, 755
TspDTI ATGAA 6 cut(s) 39, 305, 405, 980, 1002, 1322
TspRI CASTG 6 cut(s) 166, 789, 885, 943, 1039, 1152
Vha464I CTTAAG 1 cut(s) 1187
VpaK11BI GGWCC 6 cut(s) 224, 263, 308, 454, 1212, 1221
XapI RAATTY 3 cut(s) 376, 529, 1316
XceI RCATGY 1 cut(s) 1032
XcmI CCANNNNNNNNNTGG 1 cut(s) 680
XmiI GTMKAC 2 cut(s) 443, 1125
XmnI GAANNNNTTC 1 cut(s) 507
XspI CTAG 2 cut(s) 242, 809
Zsp2I ATGCAT 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.