AT3G08630

multicellular organism development

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013257
Physical Location & Seq
Forward (+)
2620713 .. 2622220
1508 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G08630.1

Sequence Viewer

Length: 1020 bp
ATGGCGGCTATGGCGGCGAAGCTTCATATATCGACGAAATCGGATCAGAGCAATGTGCGATTGCCTAGACTGATCAACCTGTCGCGTGATCCAACCGCTAGAGTCTTGTTTCCACGAAACGGATCAGTTTCTTCGCTCCACACCAACTTCTCTTCTCCAAATATAATGGTTCCATGCGCCGGAGGTGGTGGTGGTGGAAGCATCGGTAATCACGGCGGTGGAAGTGGAAGCGGAGGAGGTGGTGGTGGTTATGGAGGTTCAGAAGAAGAAGAATCGTCTCCATGGGGACCATTAGGGTTATTTATCCAAGGATGGAGATCACGAGTTGCAGCTGATTCTCAATTCCCTTTCAAGGTACTAATGGAAATGCTTGTTGGTGTTAGCGCCAATGTACTTGGCGACATGGCTTCACGCCCTAATTTCGGATTGAACGAGCTAGATTTCGTCTTCTCCACTCTCGTTGTAGGTTCGATTCTCAATTTCACACTCATGTACCTCTTAGCTCCTTCTGCAATATCTCATGGATCCTCCAATTTGTTGCCTGGAATCTTTAGAAGCTGTCCTTCGAGCCATATGTTTGAACAGGGTAACTTCACCCTTATGAACCGTTTTGGGACTCTTGTGTACAAAGGAATGGTTTTTGCTACCGTGGGATTAGCTGCAGGTCTTGTTGGAACCGCTATCTCTAACGGGTTGATCATGCTGAGGAAAAAGATTGATCCGAGCTTCGAAACGCCGAACAAACCACCACCTACGCTGCTGAATTCTTTAACTTGGGCAACGCATATGGGAGTGAGCGCCAATGTGAGGTACCAAACGTTGAATGGGGCTGAATTCTTGCTGGAAAAGTCATTGCCGCCATTGGTGTTTAAAACAAGTGTGATTGCTTTGAGGGTTGTGAACAATGTTTTGGGAGGAATGTCGTTTGTTACATTGGCGAGGATGACTGGATCACAGTCGGTGGAGGAGGAGAAGAAGATAGAGATGTCAGAGATATCAGAGAAGGAGAAAGAGGATTGA

Protein Analysis

339

Amino Acids

35.95

Weight (kDa)

8.52

Isoelectric Point (pI)

45.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RETICULATA-like PF11891 108 - 276 1.1e-61 Protein RETICULATA-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013257)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G08630 AT3G08640
fragaria_vesca FvH4_6g09440
malus_domestica MD04G1177700.v1.1 MD12G1193000.v1.1
prunus_persica Prupe.6G297600_v2.0.a1
pyrus_communis pycom04g15670
rosa_chinensis RchiOBHm_Chr3g0459911
rosa_laevigata RLG00000025052
rosa_multiflora Rmu_co8396657.1_g000001 Rmu_sc0000240.1_g000046 Rmu_sc0016534.1_g000001
rosa_roxburghii Rroxscaffold_6G00419920
rosa_rugosa Rorug03G0038700.1
rosa_samantha Rh3AG097500 Rh3BG100200 Rh3CG102000 Rh3DG101700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 653
Acc65I GGTACC 1 cut(s) 810
AccB1I GGYRCC 1 cut(s) 810
AccII CGCG 1 cut(s) 85
AciI CCGC 7 cut(s) 5, 14, 96, 216, 231, 678, 857
AclI AACGTT 1 cut(s) 818
AclWI GGATC 7 cut(s) 51, 83, 130, 519, 532, 713, 958
AcsI RAATTY 2 cut(s) 763, 833
AfaI GTAC 5 cut(s) 357, 393, 494, 626, 812
AfiI CCNNNNNNNGG 5 cut(s) 119, 179, 352, 422, 807
AgsI TTSAA 4 cut(s) 352, 430, 581, 823
AjnI CCWGG 1 cut(s) 541
AjuI GAANNNNNNNTTGG 4 cut(s) 357, 389, 893, 925
AleI CACNNNNGTG 1 cut(s) 216
AluBI AGCT 7 cut(s) 22, 332, 436, 503, 558, 659, 726
AluI AGCT 7 cut(s) 22, 332, 436, 503, 558, 659, 726
Alw26I GTCTC 1 cut(s) 282
AlwI GGATC 7 cut(s) 51, 83, 130, 519, 532, 713, 958
ApeKI GCWGC 3 cut(s) 329, 659, 757
ApoI RAATTY 2 cut(s) 763, 833
Asp718I GGTACC 1 cut(s) 810
AspLEI GCGC 3 cut(s) 179, 386, 800
AspS9I GGNCC 1 cut(s) 287
AsuHPI GGTGA 1 cut(s) 586
AsuII TTCGAA 1 cut(s) 729
AvaII GGWCC 1 cut(s) 287
BaeI ACNNNNGTAYC 2 cut(s) 476, 509
BamHI GGATCC 1 cut(s) 524
BanI GGYRCC 1 cut(s) 810
BauI CACGAG 1 cut(s) 321
BbsI GAAGAC 1 cut(s) 439
BbvCI CCTCAGC 1 cut(s) 704
BbvI GCAGC 3 cut(s) 341, 646, 744
BccI CCATC 1 cut(s) 306
BceAI ACGGC 1 cut(s) 229
BciT130I CCWGG 1 cut(s) 543
BclI TGATCA 2 cut(s) 72, 696
BcoDI GTCTC 1 cut(s) 282
BfaI CTAG 3 cut(s) 66, 99, 437
BfmI CTRYAG 1 cut(s) 660
BfoI RGCGCY 2 cut(s) 387, 801
BfuAI ACCTGC 1 cut(s) 653
BisI GCNGC 6 cut(s) 6, 15, 330, 660, 758, 857
BlsI GCNGC 6 cut(s) 7, 16, 331, 661, 759, 858
Bme1390I CCNGG 1 cut(s) 543
Bme18I GGWCC 1 cut(s) 287
BmgT120I GGNCC 1 cut(s) 287
BmiI GGNNCC 5 cut(s) 171, 288, 526, 676, 812
BmrFI CCNGG 1 cut(s) 543
BmsI GCATC 1 cut(s) 210
BpiI GAAGAC 1 cut(s) 439
Bpu10I CCTNAGC 1 cut(s) 704
Bpu14I TTCGAA 1 cut(s) 729
BsaBI GATNNNNATC 1 cut(s) 316
BsaJI CCNNGG 3 cut(s) 281, 307, 648
Bsc4I CCNNNNNNNGG 5 cut(s) 119, 179, 352, 422, 807
Bse1I ACTGG 1 cut(s) 952
Bse3DI GCAATG 2 cut(s) 58, 851
Bse8I GATNNNNATC 1 cut(s) 316
BseBI CCWGG 1 cut(s) 543
BseDI CCNNGG 3 cut(s) 281, 307, 648
BseGI GGATG 2 cut(s) 317, 948
BseJI GATNNNNATC 1 cut(s) 316
BseLI CCNNNNNNNGG 5 cut(s) 119, 179, 352, 422, 807
BseMI GCAATG 2 cut(s) 58, 851
BseMII CTCAG 1 cut(s) 695
BseNI ACTGG 1 cut(s) 952
BseRI GAGGAG 3 cut(s) 249, 980, 983
BseXI GCAGC 3 cut(s) 341, 646, 744
Bsh1236I CGCG 1 cut(s) 85
BshNI GGYRCC 1 cut(s) 810
BsiSI CCGG 1 cut(s) 180
BslFI GGGAC 2 cut(s) 300, 628
BslI CCNNNNNNNGG 5 cut(s) 119, 179, 352, 422, 807
BsmAI GTCTC 1 cut(s) 282
BsmBI CGTCTC 1 cut(s) 282
BsmFI GGGAC 2 cut(s) 300, 628
Bsp119I TTCGAA 1 cut(s) 729
Bsp1407I TGTACA 1 cut(s) 624
Bsp143I GATC 9 cut(s) 43, 72, 88, 122, 317, 524, 696, 718, 950
Bsp19I CCATGG 1 cut(s) 281
BspACI CCGC 7 cut(s) 5, 14, 96, 216, 231, 678, 857
BspCNI CTCAG 1 cut(s) 696
BspFNI CGCG 1 cut(s) 85
BspLI GGNNCC 5 cut(s) 171, 288, 526, 676, 812
BspMAI CTGCAG 1 cut(s) 664
BspMI ACCTGC 1 cut(s) 653
BspPI GGATC 7 cut(s) 51, 83, 130, 519, 532, 713, 958
BspT104I TTCGAA 1 cut(s) 729
BspT107I GGYRCC 1 cut(s) 810
BsrDI GCAATG 2 cut(s) 58, 851
BsrGI TGTACA 1 cut(s) 624
BsrI ACTGG 1 cut(s) 952
BssECI CCNNGG 3 cut(s) 281, 307, 648
BssMI GATC 9 cut(s) 43, 72, 88, 122, 317, 524, 696, 718, 950
BssSI CACGAG 1 cut(s) 321
BssT1I CCWWGG 2 cut(s) 281, 307
Bst2BI CACGAG 1 cut(s) 321
Bst2UI CCWGG 1 cut(s) 543
Bst4CI ACNGT 3 cut(s) 608, 649, 957
Bst6I CTCTTC 1 cut(s) 157
BstAUI TGTACA 1 cut(s) 624
BstBI TTCGAA 1 cut(s) 729
BstDEI CTNAG 2 cut(s) 499, 704
BstDSI CCRYGG 2 cut(s) 281, 648
BstF5I GGATG 2 cut(s) 317, 948
BstFNI CGCG 1 cut(s) 85
BstH2I RGCGCY 2 cut(s) 387, 801
BstHHI GCGC 3 cut(s) 179, 386, 800
BstKTI GATC 9 cut(s) 46, 75, 91, 125, 320, 527, 699, 721, 953
BstMAI GTCTC 1 cut(s) 282
BstMBI GATC 9 cut(s) 43, 72, 88, 122, 317, 524, 696, 718, 950
BstMWI GCNNNNNNNGC 3 cut(s) 11, 14, 509
BstNI CCWGG 1 cut(s) 543
BstSCI CCNGG 1 cut(s) 541
BstSFI CTRYAG 1 cut(s) 660
BstUI CGCG 1 cut(s) 85
BstV1I GCAGC 3 cut(s) 341, 646, 744
BstV2I GAAGAC 1 cut(s) 439
BstX2I RGATCY 1 cut(s) 524
BstYI RGATCY 1 cut(s) 524
BtgI CCRYGG 2 cut(s) 281, 648
BtsCI GGATG 2 cut(s) 317, 948
BveI ACCTGC 1 cut(s) 653
CfoI GCGC 3 cut(s) 179, 386, 800
Cfr13I GGNCC 1 cut(s) 287
Csp6I GTAC 5 cut(s) 356, 392, 493, 625, 811
CspCI CAANNNNNGTGG 2 cut(s) 442, 477
CviAII CATG 6 cut(s) 174, 282, 403, 490, 521, 700
CviQI GTAC 5 cut(s) 356, 392, 493, 625, 811
DdeI CTNAG 2 cut(s) 499, 704
DpnI GATC 9 cut(s) 45, 74, 90, 124, 319, 526, 698, 720, 952
DpnII GATC 9 cut(s) 43, 72, 88, 122, 317, 524, 696, 718, 950
DraI TTTAAA 1 cut(s) 871
Eam1104I CTCTTC 1 cut(s) 157
EarI CTCTTC 1 cut(s) 157
Eco130I CCWWGG 2 cut(s) 281, 307
Eco32I GATATC 1 cut(s) 996
Eco47I GGWCC 1 cut(s) 287
EcoRI GAATTC 2 cut(s) 763, 833
EcoRII CCWGG 1 cut(s) 541
EcoRV GATATC 1 cut(s) 996
EcoT14I CCWWGG 2 cut(s) 281, 307
ErhI CCWWGG 2 cut(s) 281, 307
Esp3I CGTCTC 1 cut(s) 282
FaeI CATG 6 cut(s) 177, 285, 406, 493, 524, 703
FalI AAGNNNNNCTT 2 cut(s) 547, 579
FaqI GGGAC 2 cut(s) 300, 628
FatI CATG 6 cut(s) 173, 281, 402, 489, 520, 699
FauNDI CATATG 2 cut(s) 573, 786
FbaI TGATCA 2 cut(s) 72, 696
Fnu4HI GCNGC 6 cut(s) 6, 15, 330, 660, 758, 857
FokI GGATG 2 cut(s) 324, 955
Fsp4HI GCNGC 6 cut(s) 6, 15, 330, 660, 758, 857
FspBI CTAG 3 cut(s) 66, 99, 437
GlaI GCGC 3 cut(s) 178, 385, 799
GluI GCNGC 6 cut(s) 6, 15, 330, 660, 758, 857
HaeII RGCGCY 2 cut(s) 387, 801
HapII CCGG 1 cut(s) 180
HhaI GCGC 3 cut(s) 179, 386, 800
Hin1II CATG 6 cut(s) 177, 285, 406, 493, 524, 703
Hin6I GCGC 3 cut(s) 177, 384, 798
HinP1I GCGC 3 cut(s) 177, 384, 798
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 6 cut(s) 102, 272, 335, 472, 546, 616
HpaII CCGG 1 cut(s) 180
HphI GGTGA 1 cut(s) 586
Hpy166II GTNNAC 2 cut(s) 625, 901
Hpy188I TCNGA 7 cut(s) 43, 48, 262, 425, 723, 991, 1000
Hpy188III TCNNGA 1 cut(s) 321
Hpy8I GTNNAC 2 cut(s) 625, 901
Hpy99I CGWCG 1 cut(s) 37
HpyAV CCTTC 3 cut(s) 516, 573, 997
HpyCH4III ACNGT 3 cut(s) 608, 649, 957
HpyCH4IV ACGT 1 cut(s) 818
HpyCH4V TGCA 3 cut(s) 329, 512, 662
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 14, 509
HpyF3I CTNAG 2 cut(s) 499, 704
HpySE526I ACGT 1 cut(s) 818
Hsp92II CATG 6 cut(s) 177, 285, 406, 493, 524, 703
HspAI GCGC 3 cut(s) 177, 384, 798
KpnI GGTACC 1 cut(s) 814
Ksp22I TGATCA 2 cut(s) 72, 696
Kzo9I GATC 9 cut(s) 43, 72, 88, 122, 317, 524, 696, 718, 950
LmnI GCTCC 2 cut(s) 141, 508
LpnPI CCDG 8 cut(s) 92, 193, 528, 555, 569, 648, 827, 933
Lsp1109I GCAGC 3 cut(s) 341, 646, 744
LweI GCATC 1 cut(s) 210
MaeI CTAG 3 cut(s) 66, 99, 437
MaeII ACGT 1 cut(s) 818
MaeIII GTNAC 2 cut(s) 587, 928
MalI GATC 9 cut(s) 45, 74, 90, 124, 319, 526, 698, 720, 952
MboI GATC 9 cut(s) 43, 72, 88, 122, 317, 524, 696, 718, 950
MboII GAAGA 8 cut(s) 123, 144, 275, 278, 281, 439, 985, 988
MflI RGATCY 1 cut(s) 524
MluCI AATT 6 cut(s) 341, 418, 478, 532, 763, 833
MlyI GAGTC 2 cut(s) 111, 610
MmeI TCCRAC 2 cut(s) 116, 652
MseI TTAA 2 cut(s) 770, 870
MslI CAYNNNNRTG 3 cut(s) 216, 488, 599
MspA1I CMGCKG 1 cut(s) 332
MspI CCGG 1 cut(s) 180
MspR9I CCNGG 1 cut(s) 543
MvaI CCWGG 1 cut(s) 543
MvnI CGCG 1 cut(s) 85
MwoI GCNNNNNNNGC 3 cut(s) 11, 14, 509
NcoI CCATGG 1 cut(s) 281
NdeI CATATG 2 cut(s) 573, 786
NdeII GATC 9 cut(s) 43, 72, 88, 122, 317, 524, 696, 718, 950
NlaIII CATG 6 cut(s) 177, 285, 406, 493, 524, 703
NlaIV GGNNCC 5 cut(s) 171, 288, 526, 676, 812
NspV TTCGAA 1 cut(s) 729
OliI CACNNNNGTG 1 cut(s) 216
PcsI WCGNNNNNNNCGW 1 cut(s) 429
PfeI GAWTC 4 cut(s) 272, 335, 472, 546
PkrI GCNGC 6 cut(s) 7, 16, 331, 661, 759, 858
PleI GAGTC 2 cut(s) 110, 610
PpsI GAGTC 2 cut(s) 110, 610
Psp1406I AACGTT 1 cut(s) 818
Psp6I CCWGG 1 cut(s) 541
PspGI CCWGG 1 cut(s) 541
PspN4I GGNNCC 5 cut(s) 171, 288, 526, 676, 812
PspPI GGNCC 1 cut(s) 287
PstI CTGCAG 1 cut(s) 664
PsuI RGATCY 1 cut(s) 524
PvuII CAGCTG 1 cut(s) 332
RsaI GTAC 5 cut(s) 357, 393, 494, 626, 812
RsaNI GTAC 5 cut(s) 356, 392, 493, 625, 811
RseI CAYNNNNRTG 3 cut(s) 216, 488, 599
SaqAI TTAA 2 cut(s) 770, 870
SatI GCNGC 6 cut(s) 6, 15, 330, 660, 758, 857
Sau3AI GATC 9 cut(s) 43, 72, 88, 122, 317, 524, 696, 718, 950
Sau96I GGNCC 1 cut(s) 287
SchI GAGTC 2 cut(s) 111, 610
ScrFI CCNGG 1 cut(s) 543
SfaNI GCATC 1 cut(s) 210
SfcI CTRYAG 1 cut(s) 660
SfuI TTCGAA 1 cut(s) 729
SinI GGWCC 1 cut(s) 287
SmiMI CAYNNNNRTG 3 cut(s) 216, 488, 599
Sse9I AATT 6 cut(s) 341, 418, 478, 532, 763, 833
SsiI CCGC 7 cut(s) 5, 14, 96, 216, 231, 678, 857
SspMI CTAG 3 cut(s) 66, 99, 437
StyD4I CCNGG 1 cut(s) 541
StyI CCWWGG 2 cut(s) 281, 307
TaaI ACNGT 3 cut(s) 608, 649, 957
TaiI ACGT 1 cut(s) 821
TaqI TCGA 4 cut(s) 32, 470, 566, 729
TasI AATT 6 cut(s) 341, 418, 478, 532, 763, 833
TatI WGTACW 2 cut(s) 391, 624
TauI GCSGC 3 cut(s) 8, 17, 859
TfiI GAWTC 4 cut(s) 272, 335, 472, 546
Tru1I TTAA 2 cut(s) 770, 870
Tru9I TTAA 2 cut(s) 770, 870
TseI GCWGC 3 cut(s) 329, 659, 757
TspDTI ATGAA 2 cut(s) 14, 617
TspGWI ACGGA 1 cut(s) 135
VpaK11BI GGWCC 1 cut(s) 287
XapI RAATTY 2 cut(s) 763, 833
XcmI CCANNNNNNNNNTGG 1 cut(s) 821
XspI CTAG 3 cut(s) 66, 99, 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.