Rh3BG100200

Protein RETICULATA-related

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Forward (+)
7994039 .. 7995435
1397 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG100200.1

Sequence Viewer

Length: 1056 bp
ATGGCCGCCACCGCCCAGCTCCGCTGCTCTACTCTGGCCAAAGCCCACTCCAGTCTCTCCGACAACCGCCGCAGCATCCCCAGTAACCCCAGTTCTTCAATTTCTTTCCCCTATTCCAAAACCCTAAATCGCGGCCTTTCTTTCGGACCCAGACCCATTTTGGACGGAAGGCCCGATCTTTCGTTTTCCGGCGGTAATGGCGGCAACGGCGCCGGCGGAGGAGGTAGCGGCGATTGGAGCCGCGGAGATGAGAATGAAGAGTCGAAACCCTCGACGTCGCTGTTTCAGGGTTTTGGGCTTCTGGGTATGTTTCTGAATGGATGGAGATCTAGAGTCGCCGCCGATCCTCAGTTTCCGTTCAAGGTTTTGATGGAGGAGGTCGTCGGAGTCAGCTCCTGCGTCCTGGGCGACATGGCTTCCCGGCCCAATTTCGGCCTCAACGAGCTCGATTTCGTCTTCTCGACTCTCGTCGTCGGCTGCATTCTGAACTTCACTCTCATGTATCTACTGGCGCCGAGCTTGTCCGCCTCCGCCGCAACTCTCCCTTCGATCTTCGCCAGCTGTCCGGCCAGCCACATGTTCGAACCGGGCTCTTTCGGCCTGCTGAATCGCCTCGGGACGTTGGTCTACAAAGGGGCAGTCTTTGCCGGAGTTGGATTCGCCGCAGGGCTTGCCGGTACTGCGCTTTCGAATGGGCTGATCAAGCTGAGGAAGAAGATGGACCCGGAGTTTGAGACCCCGAATAAGCCTCCACCGACATTGTTGAATGCGGTGACTTGGGCAATTCACATGGGTGTGAGCAGCAATTTGAGGTACCAGACATTGAACGGGGTGGAGTATGCGTTGGGGAAGGGGCTGCCGCCGCTGGCGTTTAAGTCTTCGGTGGTGGTTCTGAGGTGCTTGAACAATGTGCTTGGTGGGATGACATTTGTGCTTCTGGCGAGGTTGACAGGATCGCAGAGTGCTGCTGAGAAGCCGGAGGTTGGTTCGGCTGCAGAGAAGGAAAAACTGGTGGAGGAGAATGCGGATTTGAGCAATCAGTCGACTTACAAGTGA

Protein Analysis

351

Amino Acids

36.96

Weight (kDa)

8.77

Isoelectric Point (pI)

37.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RETICULATA-like PF11891 111 - 278 5.2e-63 Protein RETICULATA-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013257)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 278
Acc65I GGTACC 1 cut(s) 813
AccB1I GGYRCC 3 cut(s) 209, 511, 813
AccI GTMKAC 2 cut(s) 627, 1043
AccII CGCG 2 cut(s) 132, 243
AclWI GGATC 2 cut(s) 338, 961
AcoI YGGCCR 3 cut(s) 3, 36, 567
AcyI GRCGYC 3 cut(s) 210, 275, 512
AfaI GTAC 2 cut(s) 679, 815
AfiI CCNNNNNNNGG 2 cut(s) 431, 983
AflIII ACRYGT 1 cut(s) 576
AgsI TTSAA 5 cut(s) 99, 361, 766, 826, 904
AjnI CCWGG 1 cut(s) 402
AleI CACNNNNGTG 1 cut(s) 792
AluBI AGCT 6 cut(s) 19, 393, 445, 519, 561, 706
AluI AGCT 6 cut(s) 19, 393, 445, 519, 561, 706
Alw21I GWGCWC 1 cut(s) 447
Alw26I GTCTC 2 cut(s) 59, 728
AlwI GGATC 2 cut(s) 338, 961
AlwNI CAGNNNCTG 1 cut(s) 396
Ama87I CYCGRG 1 cut(s) 614
AoxI GGCC 8 cut(s) 3, 36, 133, 170, 422, 433, 567, 598
ApeKI GCWGC 7 cut(s) 24, 72, 477, 801, 856, 965, 992
ArsI GACNNNNNNTTYG 4 cut(s) 624, 656, 713, 745
Asp718I GGTACC 1 cut(s) 813
AspLEI GCGC 3 cut(s) 212, 514, 685
AspS9I GGNCC 4 cut(s) 146, 171, 423, 721
AsuC2I CCSGG 3 cut(s) 421, 588, 725
AsuHPI GGTGA 1 cut(s) 784
AsuII TTCGAA 2 cut(s) 582, 689
AvaI CYCGRG 1 cut(s) 614
AvaII GGWCC 2 cut(s) 146, 721
BalI TGGCCA 1 cut(s) 38
BanI GGYRCC 3 cut(s) 209, 511, 813
BanII GRGCYC 2 cut(s) 447, 593
BbsI GAAGAC 2 cut(s) 448, 870
Bbv12I GWGCWC 1 cut(s) 447
BbvCI CCTCAGC 1 cut(s) 707
BbvI GCAGC 7 cut(s) 11, 84, 464, 813, 843, 952, 979
BccI CCATC 3 cut(s) 315, 364, 712
BceAI ACGGC 1 cut(s) 223
BciT130I CCWGG 1 cut(s) 404
BclI TGATCA 1 cut(s) 699
BcnI CCSGG 3 cut(s) 421, 588, 725
BcoDI GTCTC 2 cut(s) 59, 728
BfaI CTAG 1 cut(s) 330
BfmI CTRYAG 1 cut(s) 993
BfoI RGCGCY 2 cut(s) 213, 515
BglII AGATCT 1 cut(s) 326
Bme1390I CCNGG 4 cut(s) 404, 421, 588, 725
Bme18I GGWCC 2 cut(s) 146, 721
BmeT110I CYCGRG 1 cut(s) 614
BmgT120I GGNCC 4 cut(s) 146, 171, 423, 721
BmiI GGNNCC 6 cut(s) 148, 211, 239, 513, 723, 815
BmrFI CCNGG 4 cut(s) 404, 421, 588, 725
BmrI ACTGGG 2 cut(s) 75, 84
BmsI GCATC 1 cut(s) 84
BmuI ACTGGG 2 cut(s) 75, 84
BoxI GACNNNNGTC 2 cut(s) 467, 623
BpiI GAAGAC 2 cut(s) 448, 870
BpmI CTGGAG 1 cut(s) 34
Bpu10I CCTNAGC 1 cut(s) 707
Bpu14I TTCGAA 2 cut(s) 582, 689
BpuMI CCSGG 3 cut(s) 421, 588, 725
BsaBI GATNNNNATC 1 cut(s) 325
BsaHI GRCGYC 3 cut(s) 210, 275, 512
BsaI GGTCTC 1 cut(s) 728
BsaJI CCNNGG 3 cut(s) 241, 403, 613
BsaXI ACNNNNNCTCC 2 cut(s) 827, 857
Bsc4I CCNNNNNNNGG 2 cut(s) 431, 983
Bse118I RCCGGY 2 cut(s) 212, 674
Bse1I ACTGG 5 cut(s) 51, 81, 90, 513, 1014
Bse8I GATNNNNATC 1 cut(s) 325
BseBI CCWGG 1 cut(s) 404
BseDI CCNNGG 3 cut(s) 241, 403, 613
BseGI GGATG 3 cut(s) 75, 326, 927
BseJI GATNNNNATC 1 cut(s) 325
BseLI CCNNNNNNNGG 2 cut(s) 431, 983
BseMII CTCAG 4 cut(s) 362, 698, 884, 960
BseNI ACTGG 5 cut(s) 51, 81, 90, 513, 1014
BseRI GAGGAG 3 cut(s) 234, 389, 1031
BseXI GCAGC 7 cut(s) 11, 84, 464, 813, 843, 952, 979
BseYI CCCAGC 1 cut(s) 15
Bsh1236I CGCG 2 cut(s) 132, 243
BshFI GGCC 8 cut(s) 5, 38, 135, 172, 424, 435, 569, 600
BshNI GGYRCC 3 cut(s) 209, 511, 813
BsiHKAI GWGCWC 1 cut(s) 447
BsiHKCI CYCGRG 1 cut(s) 614
BsiSI CCGG 9 cut(s) 189, 213, 421, 566, 587, 648, 675, 725, 977
BslFI GGGAC 1 cut(s) 631
BslI CCNNNNNNNGG 2 cut(s) 431, 983
BsmAI GTCTC 2 cut(s) 59, 728
BsmFI GGGAC 1 cut(s) 631
BsmI GAATGC 3 cut(s) 480, 772, 1027
BsnI GGCC 8 cut(s) 5, 38, 135, 172, 424, 435, 569, 600
Bso31I GGTCTC 1 cut(s) 728
BsoBI CYCGRG 1 cut(s) 614
Bsp119I TTCGAA 2 cut(s) 582, 689
Bsp1286I GDGCHC 2 cut(s) 447, 593
Bsp143I GATC 6 cut(s) 175, 326, 343, 549, 699, 953
BspANI GGCC 8 cut(s) 5, 38, 135, 172, 424, 435, 569, 600
BspCNI CTCAG 4 cut(s) 361, 699, 885, 961
BspFNI CGCG 2 cut(s) 132, 243
BspLI GGNNCC 6 cut(s) 148, 211, 239, 513, 723, 815
BspMAI CTGCAG 1 cut(s) 997
BspPI GGATC 2 cut(s) 338, 961
BspT104I TTCGAA 2 cut(s) 582, 689
BspT107I GGYRCC 3 cut(s) 209, 511, 813
BspTNI GGTCTC 1 cut(s) 728
BsrFI RCCGGY 2 cut(s) 212, 674
BsrI ACTGG 5 cut(s) 51, 81, 90, 513, 1014
BssAI RCCGGY 2 cut(s) 212, 674
BssECI CCNNGG 3 cut(s) 241, 403, 613
BssMI GATC 6 cut(s) 175, 326, 343, 549, 699, 953
BssNI GRCGYC 3 cut(s) 210, 275, 512
Bst2UI CCWGG 1 cut(s) 404
Bst6I CTCTTC 1 cut(s) 252
BstACI GRCGYC 3 cut(s) 210, 275, 512
BstAPI GCANNNNNTGC 2 cut(s) 644, 671
BstBI TTCGAA 2 cut(s) 582, 689
BstC8I GCNNGC 6 cut(s) 214, 559, 571, 602, 672, 867
BstDEI CTNAG 4 cut(s) 348, 707, 893, 969
BstDSI CCRYGG 1 cut(s) 241
BstF5I GGATG 3 cut(s) 75, 326, 927
BstFNI CGCG 2 cut(s) 132, 243
BstH2I RGCGCY 2 cut(s) 213, 515
BstHHI GCGC 3 cut(s) 212, 514, 685
BstKTI GATC 6 cut(s) 178, 329, 346, 552, 702, 956
BstMAI GTCTC 2 cut(s) 59, 728
BstMBI GATC 6 cut(s) 175, 326, 343, 549, 699, 953
BstNI CCWGG 1 cut(s) 404
BstNSI RCATGY 1 cut(s) 580
BstPAI GACNNNNGTC 2 cut(s) 467, 623
BstSCI CCNGG 4 cut(s) 402, 419, 586, 723
BstSFI CTRYAG 1 cut(s) 993
BstUI CGCG 2 cut(s) 132, 243
BstV1I GCAGC 7 cut(s) 11, 84, 464, 813, 843, 952, 979
BstV2I GAAGAC 2 cut(s) 448, 870
BstX2I RGATCY 1 cut(s) 326
BstYI RGATCY 1 cut(s) 326
BsuRI GGCC 8 cut(s) 5, 38, 135, 172, 424, 435, 569, 600
BtgI CCRYGG 1 cut(s) 241
BtsCI GGATG 3 cut(s) 75, 326, 927
Cac8I GCNNGC 6 cut(s) 214, 559, 571, 602, 672, 867
CaiI CAGNNNCTG 1 cut(s) 396
CfoI GCGC 3 cut(s) 212, 514, 685
Cfr10I RCCGGY 2 cut(s) 212, 674
Cfr13I GGNCC 4 cut(s) 146, 171, 423, 721
Cfr42I CCGCGG 1 cut(s) 244
CseI GACGC 1 cut(s) 388
Csp6I GTAC 2 cut(s) 678, 814
CspCI CAANNNNNGTGG 2 cut(s) 741, 776
CviAII CATG 4 cut(s) 412, 499, 577, 790
CviQI GTAC 2 cut(s) 678, 814
DdeI CTNAG 4 cut(s) 348, 707, 893, 969
DinI GGCGCC 2 cut(s) 211, 513
DpnI GATC 6 cut(s) 177, 328, 345, 551, 701, 955
DpnII GATC 6 cut(s) 175, 326, 343, 549, 699, 953
EaeI YGGCCR 3 cut(s) 3, 36, 567
Eam1104I CTCTTC 1 cut(s) 252
EarI CTCTTC 1 cut(s) 252
EciI GGCGGA 3 cut(s) 231, 514, 520
Ecl136II GAGCTC 1 cut(s) 445
Eco24I GRGCYC 2 cut(s) 447, 593
Eco31I GGTCTC 1 cut(s) 728
Eco47I GGWCC 2 cut(s) 146, 721
Eco53kI GAGCTC 1 cut(s) 445
Eco88I CYCGRG 1 cut(s) 614
EcoICRI GAGCTC 1 cut(s) 445
EcoRII CCWGG 1 cut(s) 402
EcoT38I GRGCYC 2 cut(s) 447, 593
EgeI GGCGCC 2 cut(s) 211, 513
EheI GGCGCC 2 cut(s) 211, 513
FaeI CATG 4 cut(s) 415, 502, 580, 793
FaiI YATR 6 cut(s) 308, 413, 500, 578, 791, 840
FaqI GGGAC 1 cut(s) 631
FatI CATG 4 cut(s) 411, 498, 576, 789
FbaI TGATCA 1 cut(s) 699
FblI GTMKAC 2 cut(s) 627, 1043
FokI GGATG 3 cut(s) 62, 333, 934
FriOI GRGCYC 2 cut(s) 447, 593
FspBI CTAG 1 cut(s) 330
GlaI GCGC 3 cut(s) 211, 513, 684
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 34
HaeII RGCGCY 2 cut(s) 213, 515
HaeIII GGCC 8 cut(s) 5, 38, 135, 172, 424, 435, 569, 600
HapII CCGG 9 cut(s) 189, 213, 421, 566, 587, 648, 675, 725, 977
HgaI GACGC 1 cut(s) 388
HhaI GCGC 3 cut(s) 212, 514, 685
Hin1I GRCGYC 3 cut(s) 210, 275, 512
Hin1II CATG 4 cut(s) 415, 502, 580, 793
Hin6I GCGC 3 cut(s) 210, 512, 683
HinP1I GCGC 3 cut(s) 210, 512, 683
HincII GTYRAC 2 cut(s) 948, 1044
HindII GTYRAC 2 cut(s) 948, 1044
HinfI GANTC 6 cut(s) 260, 333, 387, 463, 607, 657
HpaII CCGG 9 cut(s) 189, 213, 421, 566, 587, 648, 675, 725, 977
HphI GGTGA 1 cut(s) 784
Hpy166II GTNNAC 3 cut(s) 628, 948, 1044
Hpy188I TCNGA 6 cut(s) 61, 146, 315, 386, 486, 894
Hpy188III TCNNGA 3 cut(s) 330, 460, 616
Hpy8I GTNNAC 3 cut(s) 628, 948, 1044
Hpy99I CGWCG 5 cut(s) 277, 280, 386, 473, 476
HpyAV CCTTC 4 cut(s) 162, 555, 844, 994
HpyCH4IV ACGT 2 cut(s) 275, 620
HpyCH4V TGCA 2 cut(s) 480, 995
HpyF3I CTNAG 4 cut(s) 348, 707, 893, 969
HpySE526I ACGT 2 cut(s) 275, 620
Hsp92I GRCGYC 3 cut(s) 210, 275, 512
Hsp92II CATG 4 cut(s) 415, 502, 580, 793
HspAI GCGC 3 cut(s) 210, 512, 683
KasI GGCGCC 2 cut(s) 209, 511
KpnI GGTACC 1 cut(s) 817
KroI GCCGGC 1 cut(s) 212
KroNI GCCGGC 1 cut(s) 214
Ksp22I TGATCA 1 cut(s) 699
KspI CCGCGG 1 cut(s) 244
Kzo9I GATC 6 cut(s) 175, 326, 343, 549, 699, 953
LmnI GCTCC 3 cut(s) 24, 237, 398
Lsp1109I GCAGC 7 cut(s) 11, 84, 464, 813, 843, 952, 979
LweI GCATC 1 cut(s) 84
MaeI CTAG 1 cut(s) 330
MaeII ACGT 2 cut(s) 275, 620
MaeIII GTNAC 2 cut(s) 83, 772
MalI GATC 6 cut(s) 177, 328, 345, 551, 701, 955
MboI GATC 6 cut(s) 175, 326, 343, 549, 699, 953
MboII GAAGA 7 cut(s) 87, 269, 448, 544, 724, 727, 870
MflI RGATCY 1 cut(s) 326
MhlI GDGCHC 2 cut(s) 447, 593
MlsI TGGCCA 1 cut(s) 38
MluCI AATT 4 cut(s) 99, 427, 783, 805
MluNI TGGCCA 1 cut(s) 38
Mly113I GGCGCC 2 cut(s) 210, 512
MlyI GAGTC 4 cut(s) 269, 342, 396, 457
MmeI TCCRAC 3 cut(s) 84, 364, 634
Mox20I TGGCCA 1 cut(s) 38
MreI CGCCGGCG 1 cut(s) 212
MroNI GCCGGC 1 cut(s) 212
MscI TGGCCA 1 cut(s) 38
MseI TTAA 1 cut(s) 873
MslI CAYNNNNRTG 3 cut(s) 497, 792, 794
Msp20I TGGCCA 1 cut(s) 38
MspA1I CMGCKG 4 cut(s) 24, 243, 561, 865
MspI CCGG 9 cut(s) 189, 213, 421, 566, 587, 648, 675, 725, 977
MspR9I CCNGG 4 cut(s) 404, 421, 588, 725
Mva1269I GAATGC 3 cut(s) 480, 772, 1027
MvaI CCWGG 1 cut(s) 404
MvnI CGCG 2 cut(s) 132, 243
NaeI GCCGGC 1 cut(s) 214
NarI GGCGCC 2 cut(s) 210, 512
NciI CCSGG 3 cut(s) 421, 588, 725
NdeII GATC 6 cut(s) 175, 326, 343, 549, 699, 953
NgoMIV GCCGGC 1 cut(s) 212
NlaIII CATG 4 cut(s) 415, 502, 580, 793
NlaIV GGNNCC 6 cut(s) 148, 211, 239, 513, 723, 815
NmeAIII GCCGAG 1 cut(s) 540
NmuCI GTSAC 1 cut(s) 772
NspI RCATGY 1 cut(s) 580
NspV TTCGAA 2 cut(s) 582, 689
OliI CACNNNNGTG 1 cut(s) 792
PciI ACATGT 1 cut(s) 576
PcsI WCGNNNNNNNCGW 3 cut(s) 171, 269, 438
PctI GAATGC 3 cut(s) 480, 772, 1027
PdiI GCCGGC 1 cut(s) 214
PfeI GAWTC 2 cut(s) 607, 657
PleI GAGTC 4 cut(s) 268, 341, 395, 457
PluTI GGCGCC 2 cut(s) 213, 515
PpsI GAGTC 4 cut(s) 268, 341, 395, 457
PscI ACATGT 1 cut(s) 576
PshAI GACNNNNGTC 2 cut(s) 467, 623
Psp124BI GAGCTC 1 cut(s) 447
Psp6I CCWGG 1 cut(s) 402
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 1 cut(s) 402
PspN4I GGNNCC 6 cut(s) 148, 211, 239, 513, 723, 815
PspPI GGNCC 4 cut(s) 146, 171, 423, 721
PsrI GAACNNNNNNTAC 2 cut(s) 76, 108
PstI CTGCAG 1 cut(s) 997
PstNI CAGNNNCTG 1 cut(s) 396
PsuI RGATCY 1 cut(s) 326
PvuII CAGCTG 1 cut(s) 561
RsaI GTAC 2 cut(s) 679, 815
RsaNI GTAC 2 cut(s) 678, 814
RseI CAYNNNNRTG 3 cut(s) 497, 792, 794
SacI GAGCTC 1 cut(s) 447
SacII CCGCGG 1 cut(s) 244
SalI GTCGAC 1 cut(s) 1042
SaqAI TTAA 1 cut(s) 873
Sau3AI GATC 6 cut(s) 175, 326, 343, 549, 699, 953
Sau96I GGNCC 4 cut(s) 146, 171, 423, 721
SchI GAGTC 4 cut(s) 269, 342, 396, 457
ScrFI CCNGG 4 cut(s) 404, 421, 588, 725
SduI GDGCHC 2 cut(s) 447, 593
SfaNI GCATC 1 cut(s) 84
SfcI CTRYAG 1 cut(s) 993
SfoI GGCGCC 2 cut(s) 211, 513
Sfr303I CCGCGG 1 cut(s) 244
SfuI TTCGAA 2 cut(s) 582, 689
SgrAI CRCCGGYG 1 cut(s) 212
SgrBI CCGCGG 1 cut(s) 244
SinI GGWCC 2 cut(s) 146, 721
SmiMI CAYNNNNRTG 3 cut(s) 497, 792, 794
Sse9I AATT 4 cut(s) 99, 427, 783, 805
SspDI GGCGCC 2 cut(s) 209, 511
SspMI CTAG 1 cut(s) 330
SstI GAGCTC 1 cut(s) 447
StyD4I CCNGG 4 cut(s) 402, 419, 586, 723
TaiI ACGT 2 cut(s) 278, 623
TaqI TCGA 8 cut(s) 263, 272, 447, 461, 548, 582, 689, 1043
TasI AATT 4 cut(s) 99, 427, 783, 805
TfiI GAWTC 2 cut(s) 607, 657
Tru1I TTAA 1 cut(s) 873
Tru9I TTAA 1 cut(s) 873
TseFI GTSAC 1 cut(s) 772
TseI GCWGC 7 cut(s) 24, 72, 477, 801, 856, 965, 992
Tsp45I GTSAC 1 cut(s) 772
TspDTI ATGAA 1 cut(s) 270
TspGWI ACGGA 2 cut(s) 180, 345
VpaK11BI GGWCC 2 cut(s) 146, 721
XbaI TCTAGA 1 cut(s) 329
XceI RCATGY 1 cut(s) 580
XcmI CCANNNNNNNNNTGG 1 cut(s) 157
XmiI GTMKAC 2 cut(s) 627, 1043
XspI CTAG 1 cut(s) 330
ZraI GACGTC 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.