Rmu_sc0000240.1_g000046

Protein RETICULATA-related

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000240.1
Physical Location & Seq
Forward (+)
247091 .. 248161
1071 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000240.1_g000046.1.cds

Sequence Viewer

Length: 1071 bp
atggccgccaccgcccagctccgctgctctactctggccaaagcccactccagtctctccgacaaccgccgcagcatccccagtaaccccagttcttcaatttctttcccctattccaaaaccctaaatcgcggcctttctttcggacccagacccattttggacggaaggcccgatctttcgttttccggcggtaatggcggcaacggcgccggccggggaggcgccggcggaggaggtagcggcgattggagccgcggagatgagaatgaagagtcgaaaccctcgacgtcgctgtttcagggttttgggcttctgggtatgtttctgaatggatggagatctagagtcgccgccgatcctcagtttccgtttaaggttttgatggaggaggtcgtcggagtcagctcctgcgtcctcggcgacatggcttcccggcccaatttcggcctcaacgagctcgatttcgtcttctcgactctcgtcgtcggctgcattctgaacttcactctcatgtatctactggcgccgagcttgtccgcctccgccgcaactctcccttcgatcttcgccagctgtccggccagccacatgttcgaaccgggctctttcggcctgctgaatcgcctcgggacgttggtctacaaaggggcagtctttgccggagttggattcgccgctgggcttgccggtactgcgctttcgaatgggctgatcaagctgaggaagaagatggacccggagtttgagaccccgaataagcctccaccgacattgttgaatgcggtgacttgggcaattcacatgggtgtgagcagcaatttgaggtaccagacattgaacggggtggagtatgcgttggggaaggggctgccgccgctggcgtttaagtcttcggtggtggttctgaggtgcttgaacaatgtgcttggtgggatgacatttgtgcttctggcgaggttgacaggatcgcagagtgctgctgagaagccggagattggatcggctgcagagaaggaaaaactggtggaggagaatgcggatttgagcaatcagtcgacttacaagtga

Protein Analysis

356

Amino Acids

37.37

Weight (kDa)

8.94

Isoelectric Point (pI)

37.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013257)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 293
Acc65I GGTACC 1 cut(s) 828
AccB1I GGYRCC 4 cut(s) 209, 224, 526, 828
AccI GTMKAC 2 cut(s) 642, 1058
AccII CGCG 2 cut(s) 132, 258
AclWI GGATC 3 cut(s) 353, 976, 1009
AcoI YGGCCR 4 cut(s) 3, 36, 214, 582
AcyI GRCGYC 4 cut(s) 210, 225, 290, 527
AfaI GTAC 2 cut(s) 694, 830
AfiI CCNNNNNNNGG 2 cut(s) 446, 998
AflIII ACRYGT 1 cut(s) 591
AgsI TTSAA 4 cut(s) 99, 781, 841, 919
AleI CACNNNNGTG 1 cut(s) 807
AluBI AGCT 6 cut(s) 19, 408, 460, 534, 576, 721
AluI AGCT 6 cut(s) 19, 408, 460, 534, 576, 721
Alw21I GWGCWC 1 cut(s) 462
Alw26I GTCTC 2 cut(s) 59, 743
AlwI GGATC 3 cut(s) 353, 976, 1009
AlwNI CAGNNNCTG 1 cut(s) 411
Ama87I CYCGRG 1 cut(s) 629
AoxI GGCC 9 cut(s) 3, 36, 133, 170, 214, 437, 448, 582, 613
ApeKI GCWGC 7 cut(s) 24, 72, 492, 816, 871, 980, 1007
ArsI GACNNNNNNTTYG 4 cut(s) 639, 671, 728, 760
Asp718I GGTACC 1 cut(s) 828
AspLEI GCGC 4 cut(s) 212, 227, 529, 700
AspS9I GGNCC 4 cut(s) 146, 171, 438, 736
AsuC2I CCSGG 4 cut(s) 218, 436, 603, 740
AsuHPI GGTGA 1 cut(s) 799
AsuII TTCGAA 2 cut(s) 597, 704
AvaI CYCGRG 1 cut(s) 629
AvaII GGWCC 2 cut(s) 146, 736
BalI TGGCCA 1 cut(s) 38
BanI GGYRCC 4 cut(s) 209, 224, 526, 828
BanII GRGCYC 2 cut(s) 462, 608
BbsI GAAGAC 2 cut(s) 463, 885
Bbv12I GWGCWC 1 cut(s) 462
BbvCI CCTCAGC 1 cut(s) 722
BbvI GCAGC 7 cut(s) 11, 84, 479, 828, 858, 967, 994
BccI CCATC 3 cut(s) 330, 379, 727
BceAI ACGGC 1 cut(s) 223
BclI TGATCA 1 cut(s) 714
BcnI CCSGG 4 cut(s) 218, 436, 603, 740
BcoDI GTCTC 2 cut(s) 59, 743
BfaI CTAG 1 cut(s) 345
BfmI CTRYAG 1 cut(s) 1008
BfoI RGCGCY 3 cut(s) 213, 228, 530
BglI GCCNNNNNGGC 1 cut(s) 222
BglII AGATCT 1 cut(s) 341
Bme1390I CCNGG 4 cut(s) 218, 436, 603, 740
Bme18I GGWCC 2 cut(s) 146, 736
BmeT110I CYCGRG 1 cut(s) 629
BmgT120I GGNCC 4 cut(s) 146, 171, 438, 736
BmiI GGNNCC 7 cut(s) 148, 211, 226, 254, 528, 738, 830
BmrFI CCNGG 4 cut(s) 218, 436, 603, 740
BmrI ACTGGG 2 cut(s) 75, 84
BmsI GCATC 1 cut(s) 84
BmuI ACTGGG 2 cut(s) 75, 84
BoxI GACNNNNGTC 2 cut(s) 482, 638
BpiI GAAGAC 2 cut(s) 463, 885
BpmI CTGGAG 1 cut(s) 34
Bpu10I CCTNAGC 1 cut(s) 722
Bpu14I TTCGAA 2 cut(s) 597, 704
BpuMI CCSGG 4 cut(s) 218, 436, 603, 740
BsaBI GATNNNNATC 1 cut(s) 340
BsaHI GRCGYC 4 cut(s) 210, 225, 290, 527
BsaI GGTCTC 1 cut(s) 743
BsaJI CCNNGG 4 cut(s) 217, 256, 418, 628
BsaXI ACNNNNNCTCC 2 cut(s) 842, 872
Bsc4I CCNNNNNNNGG 2 cut(s) 446, 998
Bse118I RCCGGY 3 cut(s) 212, 227, 689
Bse1I ACTGG 5 cut(s) 51, 81, 90, 528, 1029
Bse8I GATNNNNATC 1 cut(s) 340
BseDI CCNNGG 4 cut(s) 217, 256, 418, 628
BseGI GGATG 3 cut(s) 75, 341, 942
BseJI GATNNNNATC 1 cut(s) 340
BseLI CCNNNNNNNGG 2 cut(s) 446, 998
BseMII CTCAG 4 cut(s) 377, 713, 899, 975
BseNI ACTGG 5 cut(s) 51, 81, 90, 528, 1029
BseRI GAGGAG 3 cut(s) 249, 404, 1046
BseX3I CGGCCG 1 cut(s) 214
BseXI GCAGC 7 cut(s) 11, 84, 479, 828, 858, 967, 994
BseYI CCCAGC 2 cut(s) 15, 680
Bsh1236I CGCG 2 cut(s) 132, 258
Bsh1285I CGRYCG 1 cut(s) 217
BshFI GGCC 9 cut(s) 5, 38, 135, 172, 216, 439, 450, 584, 615
BshNI GGYRCC 4 cut(s) 209, 224, 526, 828
BsiEI CGRYCG 1 cut(s) 217
BsiHKAI GWGCWC 1 cut(s) 462
BsiHKCI CYCGRG 1 cut(s) 629
BslFI GGGAC 1 cut(s) 646
BslI CCNNNNNNNGG 2 cut(s) 446, 998
BsmAI GTCTC 2 cut(s) 59, 743
BsmFI GGGAC 1 cut(s) 646
BsmI GAATGC 3 cut(s) 495, 787, 1042
BsnI GGCC 9 cut(s) 5, 38, 135, 172, 216, 439, 450, 584, 615
Bso31I GGTCTC 1 cut(s) 743
BsoBI CYCGRG 1 cut(s) 629
Bsp119I TTCGAA 2 cut(s) 597, 704
Bsp1286I GDGCHC 2 cut(s) 462, 608
Bsp143I GATC 7 cut(s) 175, 341, 358, 564, 714, 968, 1001
BspANI GGCC 9 cut(s) 5, 38, 135, 172, 216, 439, 450, 584, 615
BspCNI CTCAG 4 cut(s) 376, 714, 900, 976
BspFNI CGCG 2 cut(s) 132, 258
BspLI GGNNCC 7 cut(s) 148, 211, 226, 254, 528, 738, 830
BspMAI CTGCAG 1 cut(s) 1012
BspPI GGATC 3 cut(s) 353, 976, 1009
BspT104I TTCGAA 2 cut(s) 597, 704
BspT107I GGYRCC 4 cut(s) 209, 224, 526, 828
BspTNI GGTCTC 1 cut(s) 743
BsrFI RCCGGY 3 cut(s) 212, 227, 689
BsrI ACTGG 5 cut(s) 51, 81, 90, 528, 1029
BssAI RCCGGY 3 cut(s) 212, 227, 689
BssECI CCNNGG 4 cut(s) 217, 256, 418, 628
BssMI GATC 7 cut(s) 175, 341, 358, 564, 714, 968, 1001
BssNI GRCGYC 4 cut(s) 210, 225, 290, 527
Bst6I CTCTTC 1 cut(s) 267
BstACI GRCGYC 4 cut(s) 210, 225, 290, 527
BstAPI GCANNNNNTGC 1 cut(s) 659
BstBI TTCGAA 2 cut(s) 597, 704
BstC8I GCNNGC 7 cut(s) 214, 229, 574, 586, 617, 687, 882
BstDEI CTNAG 4 cut(s) 363, 722, 908, 984
BstDSI CCRYGG 1 cut(s) 256
BstF5I GGATG 3 cut(s) 75, 341, 942
BstFNI CGCG 2 cut(s) 132, 258
BstH2I RGCGCY 3 cut(s) 213, 228, 530
BstHHI GCGC 4 cut(s) 212, 227, 529, 700
BstKTI GATC 7 cut(s) 178, 344, 361, 567, 717, 971, 1004
BstMAI GTCTC 2 cut(s) 59, 743
BstMBI GATC 7 cut(s) 175, 341, 358, 564, 714, 968, 1001
BstMCI CGRYCG 1 cut(s) 217
BstNSI RCATGY 1 cut(s) 595
BstPAI GACNNNNGTC 2 cut(s) 482, 638
BstSCI CCNGG 4 cut(s) 216, 434, 601, 738
BstSFI CTRYAG 1 cut(s) 1008
BstUI CGCG 2 cut(s) 132, 258
BstV1I GCAGC 7 cut(s) 11, 84, 479, 828, 858, 967, 994
BstV2I GAAGAC 2 cut(s) 463, 885
BstX2I RGATCY 1 cut(s) 341
BstYI RGATCY 1 cut(s) 341
BstZI CGGCCG 1 cut(s) 214
BsuRI GGCC 9 cut(s) 5, 38, 135, 172, 216, 439, 450, 584, 615
BtgI CCRYGG 1 cut(s) 256
BtsCI GGATG 3 cut(s) 75, 341, 942
Cac8I GCNNGC 7 cut(s) 214, 229, 574, 586, 617, 687, 882
CaiI CAGNNNCTG 1 cut(s) 411
CfoI GCGC 4 cut(s) 212, 227, 529, 700
Cfr10I RCCGGY 3 cut(s) 212, 227, 689
Cfr13I GGNCC 4 cut(s) 146, 171, 438, 736
Cfr42I CCGCGG 1 cut(s) 259
CseI GACGC 1 cut(s) 403
Csp6I GTAC 2 cut(s) 693, 829
CspCI CAANNNNNGTGG 2 cut(s) 756, 791
CviAII CATG 4 cut(s) 427, 514, 592, 805
CviQI GTAC 2 cut(s) 693, 829
DdeI CTNAG 4 cut(s) 363, 722, 908, 984
DinI GGCGCC 3 cut(s) 211, 226, 528
DpnI GATC 7 cut(s) 177, 343, 360, 566, 716, 970, 1003
DpnII GATC 7 cut(s) 175, 341, 358, 564, 714, 968, 1001
EaeI YGGCCR 4 cut(s) 3, 36, 214, 582
EagI CGGCCG 1 cut(s) 214
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
EciI GGCGGA 3 cut(s) 246, 529, 535
Ecl136II GAGCTC 1 cut(s) 460
EclXI CGGCCG 1 cut(s) 214
Eco24I GRGCYC 2 cut(s) 462, 608
Eco31I GGTCTC 1 cut(s) 743
Eco47I GGWCC 2 cut(s) 146, 736
Eco52I CGGCCG 1 cut(s) 214
Eco53kI GAGCTC 1 cut(s) 460
Eco88I CYCGRG 1 cut(s) 629
EcoICRI GAGCTC 1 cut(s) 460
EcoT38I GRGCYC 2 cut(s) 462, 608
EgeI GGCGCC 3 cut(s) 211, 226, 528
EheI GGCGCC 3 cut(s) 211, 226, 528
FaeI CATG 4 cut(s) 430, 517, 595, 808
FaiI YATR 6 cut(s) 323, 428, 515, 593, 806, 855
FaqI GGGAC 1 cut(s) 646
FatI CATG 4 cut(s) 426, 513, 591, 804
FbaI TGATCA 1 cut(s) 714
FblI GTMKAC 2 cut(s) 642, 1058
FokI GGATG 3 cut(s) 62, 348, 949
FriOI GRGCYC 2 cut(s) 462, 608
FspBI CTAG 1 cut(s) 345
GlaI GCGC 4 cut(s) 211, 226, 528, 699
GsaI CCCAGC 2 cut(s) 19, 684
GsuI CTGGAG 1 cut(s) 34
HaeII RGCGCY 3 cut(s) 213, 228, 530
HaeIII GGCC 9 cut(s) 5, 38, 135, 172, 216, 439, 450, 584, 615
HgaI GACGC 1 cut(s) 403
HhaI GCGC 4 cut(s) 212, 227, 529, 700
Hin1I GRCGYC 4 cut(s) 210, 225, 290, 527
Hin1II CATG 4 cut(s) 430, 517, 595, 808
Hin6I GCGC 4 cut(s) 210, 225, 527, 698
HinP1I GCGC 4 cut(s) 210, 225, 527, 698
HincII GTYRAC 2 cut(s) 963, 1059
HindII GTYRAC 2 cut(s) 963, 1059
HinfI GANTC 6 cut(s) 275, 348, 402, 478, 622, 672
HphI GGTGA 1 cut(s) 799
Hpy166II GTNNAC 3 cut(s) 643, 963, 1059
Hpy188I TCNGA 6 cut(s) 61, 146, 330, 401, 501, 909
Hpy188III TCNNGA 3 cut(s) 345, 475, 631
Hpy8I GTNNAC 3 cut(s) 643, 963, 1059
Hpy99I CGWCG 5 cut(s) 292, 295, 401, 488, 491
HpyAV CCTTC 4 cut(s) 162, 570, 859, 1009
HpyCH4IV ACGT 2 cut(s) 290, 635
HpyCH4V TGCA 2 cut(s) 495, 1010
HpyF3I CTNAG 4 cut(s) 363, 722, 908, 984
HpySE526I ACGT 2 cut(s) 290, 635
Hsp92I GRCGYC 4 cut(s) 210, 225, 290, 527
Hsp92II CATG 4 cut(s) 430, 517, 595, 808
HspAI GCGC 4 cut(s) 210, 225, 527, 698
KasI GGCGCC 3 cut(s) 209, 224, 526
KpnI GGTACC 1 cut(s) 832
KroI GCCGGC 2 cut(s) 212, 227
KroNI GCCGGC 2 cut(s) 214, 229
Ksp22I TGATCA 1 cut(s) 714
KspI CCGCGG 1 cut(s) 259
Kzo9I GATC 7 cut(s) 175, 341, 358, 564, 714, 968, 1001
LmnI GCTCC 3 cut(s) 24, 252, 413
Lsp1109I GCAGC 7 cut(s) 11, 84, 479, 828, 858, 967, 994
LweI GCATC 1 cut(s) 84
MaeI CTAG 1 cut(s) 345
MaeII ACGT 2 cut(s) 290, 635
MaeIII GTNAC 2 cut(s) 83, 787
MalI GATC 7 cut(s) 177, 343, 360, 566, 716, 970, 1003
MboI GATC 7 cut(s) 175, 341, 358, 564, 714, 968, 1001
MboII GAAGA 7 cut(s) 87, 284, 463, 559, 739, 742, 885
MflI RGATCY 1 cut(s) 341
MhlI GDGCHC 2 cut(s) 462, 608
MlsI TGGCCA 1 cut(s) 38
MluCI AATT 4 cut(s) 99, 442, 798, 820
MluNI TGGCCA 1 cut(s) 38
Mly113I GGCGCC 3 cut(s) 210, 225, 527
MlyI GAGTC 4 cut(s) 284, 357, 411, 472
MmeI TCCRAC 3 cut(s) 84, 379, 649
Mox20I TGGCCA 1 cut(s) 38
MreI CGCCGGCG 1 cut(s) 227
MroNI GCCGGC 2 cut(s) 212, 227
MscI TGGCCA 1 cut(s) 38
MseI TTAA 2 cut(s) 375, 888
MslI CAYNNNNRTG 3 cut(s) 512, 807, 809
Msp20I TGGCCA 1 cut(s) 38
MspA1I CMGCKG 5 cut(s) 24, 258, 576, 680, 880
MspR9I CCNGG 4 cut(s) 218, 436, 603, 740
Mva1269I GAATGC 3 cut(s) 495, 787, 1042
MvnI CGCG 2 cut(s) 132, 258
NaeI GCCGGC 2 cut(s) 214, 229
NarI GGCGCC 3 cut(s) 210, 225, 527
NciI CCSGG 4 cut(s) 218, 436, 603, 740
NdeII GATC 7 cut(s) 175, 341, 358, 564, 714, 968, 1001
NgoMIV GCCGGC 2 cut(s) 212, 227
NlaIII CATG 4 cut(s) 430, 517, 595, 808
NlaIV GGNNCC 7 cut(s) 148, 211, 226, 254, 528, 738, 830
NmeAIII GCCGAG 2 cut(s) 399, 555
NmuCI GTSAC 1 cut(s) 787
NspI RCATGY 1 cut(s) 595
NspV TTCGAA 2 cut(s) 597, 704
OliI CACNNNNGTG 1 cut(s) 807
PciI ACATGT 1 cut(s) 591
PcsI WCGNNNNNNNCGW 3 cut(s) 171, 284, 453
PctI GAATGC 3 cut(s) 495, 787, 1042
PdiI GCCGGC 2 cut(s) 214, 229
PfeI GAWTC 2 cut(s) 622, 672
PleI GAGTC 4 cut(s) 283, 356, 410, 472
PluTI GGCGCC 3 cut(s) 213, 228, 530
PpsI GAGTC 4 cut(s) 283, 356, 410, 472
PscI ACATGT 1 cut(s) 591
PshAI GACNNNNGTC 2 cut(s) 482, 638
Psp124BI GAGCTC 1 cut(s) 462
PspFI CCCAGC 2 cut(s) 15, 680
PspN4I GGNNCC 7 cut(s) 148, 211, 226, 254, 528, 738, 830
PspPI GGNCC 4 cut(s) 146, 171, 438, 736
PsrI GAACNNNNNNTAC 2 cut(s) 76, 108
PstI CTGCAG 1 cut(s) 1012
PstNI CAGNNNCTG 1 cut(s) 411
PsuI RGATCY 1 cut(s) 341
PvuII CAGCTG 1 cut(s) 576
RsaI GTAC 2 cut(s) 694, 830
RsaNI GTAC 2 cut(s) 693, 829
RseI CAYNNNNRTG 3 cut(s) 512, 807, 809
SacI GAGCTC 1 cut(s) 462
SacII CCGCGG 1 cut(s) 259
SalI GTCGAC 1 cut(s) 1057
SaqAI TTAA 2 cut(s) 375, 888
Sau3AI GATC 7 cut(s) 175, 341, 358, 564, 714, 968, 1001
Sau96I GGNCC 4 cut(s) 146, 171, 438, 736
SchI GAGTC 4 cut(s) 284, 357, 411, 472
ScrFI CCNGG 4 cut(s) 218, 436, 603, 740
SduI GDGCHC 2 cut(s) 462, 608
SfaNI GCATC 1 cut(s) 84
SfcI CTRYAG 1 cut(s) 1008
SfoI GGCGCC 3 cut(s) 211, 226, 528
Sfr303I CCGCGG 1 cut(s) 259
SfuI TTCGAA 2 cut(s) 597, 704
SgrAI CRCCGGYG 1 cut(s) 227
SgrBI CCGCGG 1 cut(s) 259
SinI GGWCC 2 cut(s) 146, 736
SmiMI CAYNNNNRTG 3 cut(s) 512, 807, 809
Sse9I AATT 4 cut(s) 99, 442, 798, 820
SspDI GGCGCC 3 cut(s) 209, 224, 526
SspMI CTAG 1 cut(s) 345
SstI GAGCTC 1 cut(s) 462
StyD4I CCNGG 4 cut(s) 216, 434, 601, 738
TaiI ACGT 2 cut(s) 293, 638
TaqI TCGA 8 cut(s) 278, 287, 462, 476, 563, 597, 704, 1058
TasI AATT 4 cut(s) 99, 442, 798, 820
TfiI GAWTC 2 cut(s) 622, 672
Tru1I TTAA 2 cut(s) 375, 888
Tru9I TTAA 2 cut(s) 375, 888
TseFI GTSAC 1 cut(s) 787
TseI GCWGC 7 cut(s) 24, 72, 492, 816, 871, 980, 1007
Tsp45I GTSAC 1 cut(s) 787
TspDTI ATGAA 1 cut(s) 285
TspGWI ACGGA 2 cut(s) 180, 360
VpaK11BI GGWCC 2 cut(s) 146, 736
XbaI TCTAGA 1 cut(s) 344
XceI RCATGY 1 cut(s) 595
XcmI CCANNNNNNNNNTGG 1 cut(s) 157
XmiI GTMKAC 2 cut(s) 642, 1058
XspI CTAG 1 cut(s) 345
ZraI GACGTC 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.