Rh3DG101700

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0013257
Physical Location & Seq
Forward (+)
8094636 .. 8095322
687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG101700.1

Sequence Viewer

Length: 687 bp
ATGGAGGAGGTCGTCGGAGTCAGCTCCTGCGTCCTCGGCGACATGGCTTCCCGGCCCAATTTCGGCCTCAACGAGCTCGATTTCGTCTTCTCGACTCTCGTCGTCGGCTGCATTCTGAACTTCACTCTCATGTATCTACTGGCGCCGAGCTTGTCCGCCTCCGCCGCAACTCTCCCTTCGATCTTCGCCAGCTGTCCGGCCAGCCACATGTTCGAACCGGGCTCTTTCGGCCTGCTGAATCGCCTCGGGACGTTGGTCTACAAAGGGGCAGTCTTTGCCGGAGTTGGATTCGCCGCTGGGCTTGCCGGTACTGCGCTTTCGAATGGGCTGATCAAGCTGAGGAAGAAGATGGACCCGGAGTTTGAGACCCCGAATAAGCCTCCACCGACATTGTTGAATGCGGTGACTTGGGCAATTCACATGGGTGTGAGCAGCAATTTGAGGTACCAGACATTGAACGGGGTGGAGTATGCGTTGGGGAAGGGGCTGCCGCCCCTGGCGTTTAAGTCTTCGGTGGTGGTTCTGAGGTGCTTGAACAATGTGCTTGGTGGGATGACATTTGTGCTTCTGGCGAGGTTGACAGGATCGCAGAGTGCTGCTGAGAAGCCGGAGATTGGATTGGCTGCAGAGAAGGAAAAACTGGTGGAGGAGAATGCGGATTTGAGCAATCAGTCGACTTACAAGTGA

Protein Analysis

228

Amino Acids

24.09

Weight (kDa)

6.73

Isoelectric Point (pI)

34.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RETICULATA-like PF11891 1 - 155 6.4e-55 Protein RETICULATA-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013257)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G08630 AT3G08640
fragaria_vesca FvH4_6g09440
malus_domestica MD04G1177700.v1.1 MD12G1193000.v1.1
prunus_persica Prupe.6G297600_v2.0.a1
pyrus_communis pycom04g15670
rosa_chinensis RchiOBHm_Chr3g0459911
rosa_laevigata RLG00000025052
rosa_multiflora Rmu_co8396657.1_g000001 Rmu_sc0000240.1_g000046 Rmu_sc0016534.1_g000001
rosa_roxburghii Rroxscaffold_6G00419920
rosa_rugosa Rorug03G0038700.1
rosa_samantha Rh3AG097500 Rh3BG100200 Rh3CG102000 Rh3DG101700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 444
AccB1I GGYRCC 2 cut(s) 142, 444
AccI GTMKAC 2 cut(s) 258, 674
AciI CCGC 7 cut(s) 156, 162, 165, 294, 401, 491, 656
AclWI GGATC 1 cut(s) 592
AcoI YGGCCR 1 cut(s) 198
AcyI GRCGYC 1 cut(s) 143
AfaI GTAC 2 cut(s) 310, 446
AfiI CCNNNNNNNGG 2 cut(s) 62, 614
AflIII ACRYGT 1 cut(s) 207
AgsI TTSAA 3 cut(s) 397, 457, 535
AjnI CCWGG 1 cut(s) 495
AleI CACNNNNGTG 1 cut(s) 423
AluBI AGCT 5 cut(s) 24, 76, 150, 192, 337
AluI AGCT 5 cut(s) 24, 76, 150, 192, 337
Alw21I GWGCWC 1 cut(s) 78
Alw26I GTCTC 1 cut(s) 359
AlwI GGATC 1 cut(s) 592
AlwNI CAGNNNCTG 1 cut(s) 27
Ama87I CYCGRG 1 cut(s) 245
AoxI GGCC 4 cut(s) 53, 64, 198, 229
ApeKI GCWGC 5 cut(s) 108, 432, 487, 596, 623
ArsI GACNNNNNNTTYG 4 cut(s) 255, 287, 344, 376
Asp718I GGTACC 1 cut(s) 444
AspLEI GCGC 2 cut(s) 145, 316
AspS9I GGNCC 2 cut(s) 54, 352
AsuC2I CCSGG 3 cut(s) 52, 219, 356
AsuHPI GGTGA 1 cut(s) 415
AsuII TTCGAA 2 cut(s) 213, 320
AvaI CYCGRG 1 cut(s) 245
AvaII GGWCC 1 cut(s) 352
BanI GGYRCC 2 cut(s) 142, 444
BanII GRGCYC 2 cut(s) 78, 224
BbsI GAAGAC 2 cut(s) 79, 501
Bbv12I GWGCWC 1 cut(s) 78
BbvCI CCTCAGC 1 cut(s) 338
BbvI GCAGC 5 cut(s) 95, 444, 474, 583, 610
BccI CCATC 1 cut(s) 343
BciT130I CCWGG 1 cut(s) 497
BclI TGATCA 1 cut(s) 330
BcnI CCSGG 3 cut(s) 52, 219, 356
BcoDI GTCTC 1 cut(s) 359
BfmI CTRYAG 1 cut(s) 624
BfoI RGCGCY 1 cut(s) 146
BisI GCNGC 8 cut(s) 109, 165, 294, 433, 488, 491, 597, 624
BlsI GCNGC 8 cut(s) 110, 166, 295, 434, 489, 492, 598, 625
Bme1390I CCNGG 4 cut(s) 52, 219, 356, 497
Bme18I GGWCC 1 cut(s) 352
BmeT110I CYCGRG 1 cut(s) 245
BmgT120I GGNCC 2 cut(s) 54, 352
BmiI GGNNCC 3 cut(s) 144, 354, 446
BmrFI CCNGG 4 cut(s) 52, 219, 356, 497
BoxI GACNNNNGTC 2 cut(s) 98, 254
BpiI GAAGAC 2 cut(s) 79, 501
Bpu10I CCTNAGC 1 cut(s) 338
Bpu14I TTCGAA 2 cut(s) 213, 320
BpuMI CCSGG 3 cut(s) 52, 219, 356
BsaHI GRCGYC 1 cut(s) 143
BsaI GGTCTC 1 cut(s) 359
BsaJI CCNNGG 3 cut(s) 34, 244, 495
BsaXI ACNNNNNCTCC 2 cut(s) 458, 488
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 614
Bse118I RCCGGY 1 cut(s) 305
Bse1I ACTGG 2 cut(s) 144, 645
BseBI CCWGG 1 cut(s) 497
BseDI CCNNGG 3 cut(s) 34, 244, 495
BseGI GGATG 1 cut(s) 558
BseLI CCNNNNNNNGG 2 cut(s) 62, 614
BseMII CTCAG 3 cut(s) 329, 515, 591
BseNI ACTGG 2 cut(s) 144, 645
BseRI GAGGAG 2 cut(s) 20, 662
BseXI GCAGC 5 cut(s) 95, 444, 474, 583, 610
BseYI CCCAGC 1 cut(s) 296
BshFI GGCC 4 cut(s) 55, 66, 200, 231
BshNI GGYRCC 2 cut(s) 142, 444
BsiHKAI GWGCWC 1 cut(s) 78
BsiHKCI CYCGRG 1 cut(s) 245
BsiSI CCGG 7 cut(s) 52, 197, 218, 279, 306, 356, 608
BslFI GGGAC 1 cut(s) 262
BslI CCNNNNNNNGG 2 cut(s) 62, 614
BsmAI GTCTC 1 cut(s) 359
BsmFI GGGAC 1 cut(s) 262
BsmI GAATGC 3 cut(s) 111, 403, 658
BsnI GGCC 4 cut(s) 55, 66, 200, 231
Bso31I GGTCTC 1 cut(s) 359
BsoBI CYCGRG 1 cut(s) 245
Bsp119I TTCGAA 2 cut(s) 213, 320
Bsp1286I GDGCHC 2 cut(s) 78, 224
Bsp143I GATC 3 cut(s) 180, 330, 584
BspACI CCGC 7 cut(s) 156, 162, 165, 294, 401, 491, 656
BspANI GGCC 4 cut(s) 55, 66, 200, 231
BspCNI CTCAG 3 cut(s) 330, 516, 592
BspLI GGNNCC 3 cut(s) 144, 354, 446
BspMAI CTGCAG 1 cut(s) 628
BspPI GGATC 1 cut(s) 592
BspT104I TTCGAA 2 cut(s) 213, 320
BspT107I GGYRCC 2 cut(s) 142, 444
BspTNI GGTCTC 1 cut(s) 359
BsrFI RCCGGY 1 cut(s) 305
BsrI ACTGG 2 cut(s) 144, 645
BssAI RCCGGY 1 cut(s) 305
BssECI CCNNGG 3 cut(s) 34, 244, 495
BssMI GATC 3 cut(s) 180, 330, 584
BssNI GRCGYC 1 cut(s) 143
Bst2UI CCWGG 1 cut(s) 497
BstACI GRCGYC 1 cut(s) 143
BstAPI GCANNNNNTGC 1 cut(s) 275
BstBI TTCGAA 2 cut(s) 213, 320
BstC8I GCNNGC 4 cut(s) 190, 202, 233, 303
BstDEI CTNAG 3 cut(s) 338, 524, 600
BstF5I GGATG 1 cut(s) 558
BstH2I RGCGCY 1 cut(s) 146
BstHHI GCGC 2 cut(s) 145, 316
BstKTI GATC 3 cut(s) 183, 333, 587
BstMAI GTCTC 1 cut(s) 359
BstMBI GATC 3 cut(s) 180, 330, 584
BstMWI GCNNNNNNNGC 7 cut(s) 36, 164, 228, 275, 302, 311, 334
BstNI CCWGG 1 cut(s) 497
BstNSI RCATGY 1 cut(s) 211
BstPAI GACNNNNGTC 2 cut(s) 98, 254
BstSCI CCNGG 4 cut(s) 50, 217, 354, 495
BstSFI CTRYAG 1 cut(s) 624
BstV1I GCAGC 5 cut(s) 95, 444, 474, 583, 610
BstV2I GAAGAC 2 cut(s) 79, 501
BsuRI GGCC 4 cut(s) 55, 66, 200, 231
BtsCI GGATG 1 cut(s) 558
Cac8I GCNNGC 4 cut(s) 190, 202, 233, 303
CaiI CAGNNNCTG 1 cut(s) 27
CfoI GCGC 2 cut(s) 145, 316
Cfr10I RCCGGY 1 cut(s) 305
Cfr13I GGNCC 2 cut(s) 54, 352
CseI GACGC 1 cut(s) 19
Csp6I GTAC 2 cut(s) 309, 445
CspCI CAANNNNNGTGG 2 cut(s) 372, 407
CviAII CATG 4 cut(s) 43, 130, 208, 421
CviQI GTAC 2 cut(s) 309, 445
DdeI CTNAG 3 cut(s) 338, 524, 600
DinI GGCGCC 1 cut(s) 144
DpnI GATC 3 cut(s) 182, 332, 586
DpnII GATC 3 cut(s) 180, 330, 584
EaeI YGGCCR 1 cut(s) 198
EciI GGCGGA 2 cut(s) 145, 151
Ecl136II GAGCTC 1 cut(s) 76
Eco24I GRGCYC 2 cut(s) 78, 224
Eco31I GGTCTC 1 cut(s) 359
Eco47I GGWCC 1 cut(s) 352
Eco53kI GAGCTC 1 cut(s) 76
Eco88I CYCGRG 1 cut(s) 245
EcoICRI GAGCTC 1 cut(s) 76
EcoRII CCWGG 1 cut(s) 495
EcoT38I GRGCYC 2 cut(s) 78, 224
EgeI GGCGCC 1 cut(s) 144
EheI GGCGCC 1 cut(s) 144
FaeI CATG 4 cut(s) 46, 133, 211, 424
FaiI YATR 5 cut(s) 44, 131, 209, 422, 471
FaqI GGGAC 1 cut(s) 262
FatI CATG 4 cut(s) 42, 129, 207, 420
FbaI TGATCA 1 cut(s) 330
FblI GTMKAC 2 cut(s) 258, 674
Fnu4HI GCNGC 8 cut(s) 109, 165, 294, 433, 488, 491, 597, 624
FokI GGATG 1 cut(s) 565
FriOI GRGCYC 2 cut(s) 78, 224
Fsp4HI GCNGC 8 cut(s) 109, 165, 294, 433, 488, 491, 597, 624
GlaI GCGC 2 cut(s) 144, 315
GluI GCNGC 8 cut(s) 109, 165, 294, 433, 488, 491, 597, 624
GsaI CCCAGC 1 cut(s) 300
HaeII RGCGCY 1 cut(s) 146
HaeIII GGCC 4 cut(s) 55, 66, 200, 231
HapII CCGG 7 cut(s) 52, 197, 218, 279, 306, 356, 608
HgaI GACGC 1 cut(s) 19
HhaI GCGC 2 cut(s) 145, 316
Hin1I GRCGYC 1 cut(s) 143
Hin1II CATG 4 cut(s) 46, 133, 211, 424
Hin6I GCGC 2 cut(s) 143, 314
HinP1I GCGC 2 cut(s) 143, 314
HincII GTYRAC 2 cut(s) 579, 675
HindII GTYRAC 2 cut(s) 579, 675
HinfI GANTC 4 cut(s) 18, 94, 238, 288
HpaII CCGG 7 cut(s) 52, 197, 218, 279, 306, 356, 608
HphI GGTGA 1 cut(s) 415
Hpy166II GTNNAC 3 cut(s) 259, 579, 675
Hpy188I TCNGA 3 cut(s) 17, 117, 525
Hpy188III TCNNGA 2 cut(s) 91, 247
Hpy8I GTNNAC 3 cut(s) 259, 579, 675
Hpy99I CGWCG 3 cut(s) 17, 104, 107
HpyAV CCTTC 3 cut(s) 186, 475, 625
HpyCH4IV ACGT 1 cut(s) 251
HpyCH4V TGCA 2 cut(s) 111, 626
HpyF10VI GCNNNNNNNGC 7 cut(s) 36, 164, 228, 275, 302, 311, 334
HpyF3I CTNAG 3 cut(s) 338, 524, 600
HpySE526I ACGT 1 cut(s) 251
Hsp92I GRCGYC 1 cut(s) 143
Hsp92II CATG 4 cut(s) 46, 133, 211, 424
HspAI GCGC 2 cut(s) 143, 314
KasI GGCGCC 1 cut(s) 142
KpnI GGTACC 1 cut(s) 448
Ksp22I TGATCA 1 cut(s) 330
Kzo9I GATC 3 cut(s) 180, 330, 584
LmnI GCTCC 1 cut(s) 29
Lsp1109I GCAGC 5 cut(s) 95, 444, 474, 583, 610
MaeII ACGT 1 cut(s) 251
MaeIII GTNAC 1 cut(s) 403
MalI GATC 3 cut(s) 182, 332, 586
MboI GATC 3 cut(s) 180, 330, 584
MboII GAAGA 5 cut(s) 79, 175, 355, 358, 501
MhlI GDGCHC 2 cut(s) 78, 224
MluCI AATT 3 cut(s) 58, 414, 436
Mly113I GGCGCC 1 cut(s) 143
MlyI GAGTC 2 cut(s) 27, 88
MmeI TCCRAC 1 cut(s) 265
MseI TTAA 1 cut(s) 504
MslI CAYNNNNRTG 3 cut(s) 128, 423, 425
MspA1I CMGCKG 2 cut(s) 192, 296
MspI CCGG 7 cut(s) 52, 197, 218, 279, 306, 356, 608
MspR9I CCNGG 4 cut(s) 52, 219, 356, 497
Mva1269I GAATGC 3 cut(s) 111, 403, 658
MvaI CCWGG 1 cut(s) 497
MwoI GCNNNNNNNGC 7 cut(s) 36, 164, 228, 275, 302, 311, 334
NarI GGCGCC 1 cut(s) 143
NciI CCSGG 3 cut(s) 52, 219, 356
NdeII GATC 3 cut(s) 180, 330, 584
NlaIII CATG 4 cut(s) 46, 133, 211, 424
NlaIV GGNNCC 3 cut(s) 144, 354, 446
NmeAIII GCCGAG 2 cut(s) 15, 171
NmuCI GTSAC 1 cut(s) 403
NspI RCATGY 1 cut(s) 211
NspV TTCGAA 2 cut(s) 213, 320
OliI CACNNNNGTG 1 cut(s) 423
PciI ACATGT 1 cut(s) 207
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PctI GAATGC 3 cut(s) 111, 403, 658
PfeI GAWTC 2 cut(s) 238, 288
PkrI GCNGC 8 cut(s) 110, 166, 295, 434, 489, 492, 598, 625
PleI GAGTC 2 cut(s) 26, 88
PluTI GGCGCC 1 cut(s) 146
PpsI GAGTC 2 cut(s) 26, 88
PscI ACATGT 1 cut(s) 207
PshAI GACNNNNGTC 2 cut(s) 98, 254
Psp124BI GAGCTC 1 cut(s) 78
Psp6I CCWGG 1 cut(s) 495
PspFI CCCAGC 1 cut(s) 296
PspGI CCWGG 1 cut(s) 495
PspN4I GGNNCC 3 cut(s) 144, 354, 446
PspPI GGNCC 2 cut(s) 54, 352
PstI CTGCAG 1 cut(s) 628
PstNI CAGNNNCTG 1 cut(s) 27
PvuII CAGCTG 1 cut(s) 192
RsaI GTAC 2 cut(s) 310, 446
RsaNI GTAC 2 cut(s) 309, 445
RseI CAYNNNNRTG 3 cut(s) 128, 423, 425
SacI GAGCTC 1 cut(s) 78
SalI GTCGAC 1 cut(s) 673
SaqAI TTAA 1 cut(s) 504
SatI GCNGC 8 cut(s) 109, 165, 294, 433, 488, 491, 597, 624
Sau3AI GATC 3 cut(s) 180, 330, 584
Sau96I GGNCC 2 cut(s) 54, 352
SchI GAGTC 2 cut(s) 27, 88
ScrFI CCNGG 4 cut(s) 52, 219, 356, 497
SduI GDGCHC 2 cut(s) 78, 224
SfcI CTRYAG 1 cut(s) 624
SfoI GGCGCC 1 cut(s) 144
SfuI TTCGAA 2 cut(s) 213, 320
SinI GGWCC 1 cut(s) 352
SmiMI CAYNNNNRTG 3 cut(s) 128, 423, 425
Sse9I AATT 3 cut(s) 58, 414, 436
SsiI CCGC 7 cut(s) 156, 162, 165, 294, 401, 491, 656
SspDI GGCGCC 1 cut(s) 142
SstI GAGCTC 1 cut(s) 78
StyD4I CCNGG 4 cut(s) 50, 217, 354, 495
TaiI ACGT 1 cut(s) 254
TaqI TCGA 6 cut(s) 78, 92, 179, 213, 320, 674
TasI AATT 3 cut(s) 58, 414, 436
TauI GCSGC 3 cut(s) 167, 296, 493
TfiI GAWTC 2 cut(s) 238, 288
Tru1I TTAA 1 cut(s) 504
Tru9I TTAA 1 cut(s) 504
TseFI GTSAC 1 cut(s) 403
TseI GCWGC 5 cut(s) 108, 432, 487, 596, 623
Tsp45I GTSAC 1 cut(s) 403
VpaK11BI GGWCC 1 cut(s) 352
XceI RCATGY 1 cut(s) 211
XmiI GTMKAC 2 cut(s) 258, 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.