AT3G08640

multicellular organism development

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013257
Physical Location & Seq
Forward (+)
2622849 .. 2624308
1460 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G08640.1

Sequence Viewer

Length: 1014 bp
ATGGCGGCTATGGCGGCGAAGCTTCAGTTATCGGCGAAATCTGATCAAAGCAGTGTGCGATTACCGAGAGTGATCAACCTCTCCCGCGATCCAACGACTAGAGTCTCGTTTCCGCGAAATGGATCAGTTTGTTCCCTCCACACCAATTTCTCTTCTCCACATCTCGCGAAACCTTGCGCCGGAGGTGGTGGTGGTGGAAGCACCGGTAATAACGGCGGCGGAAGCGGAAGCGGAGGAGGAGGTGGTGGTTTTGGAGGTTCAGGGGGTGAAGCAAGTGAAGAATCATCTCCATGGGGACCAATAGGGTTATTCATCCAAGGATGGAGATCAAGAGTTGCAGCTGATCCTCAGTTCCCTTTTAAGGTACTAATGGAAGAGATCGTAGGACTTAGCGCTTGTGTTCTCGGTGACATGGCTTCACGACCTAATTTCGGATTAAACGAGCTAGATTTCGTCTTCTCCACGCTCGTTGTAGGTTCGATTCTCAATTTCGTACTCATGTACATGTTAGCTCCTACTGCAGCAACTCTTGGCTCCTCTCAGACTTTGCCTGGAATCTTTAGAAACTGTCCATCAAGCCATATGTTTGAACAGGGTAGCTTCACCGTTATGAACCGTTTCGGGACTCTTGTGTACAAAGGAATGGTTTTTGCTAGTGTAGGATTAGCTGCAGGTCTTGTAGGTACTGCCATTTCTAATGGGTTGATTATGCTGAGGAAGAAGATGGACCCGAGCTTCGAAACGCCAAACAAACCGCCACCGACTGTGCTTAATTCTTTAACTTGGGCAACTCATATGGGAGTGAGTGCGAATGCAAGGTACCAAACGTTGAATGGGATTGAGTTCTTGCTGGCAAAGGTGTTGCCCCCATTGGTGTTTAAGACAAGTGTGATAGTTTTGAGGTGTGCAAACAATGTTGCTGGAGGAATGTCGTTTGTTTTGTTGGCAAGGATGACGGGATCACAGTCGGTGGAGGAGAAGACAGAGATTTCAGAGAAAGAGAAGGATGATTGA

Protein Analysis

337

Amino Acids

35.25

Weight (kDa)

9.01

Isoelectric Point (pI)

42.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RETICULATA-like PF11891 111 - 280 4.5e-65 Protein RETICULATA-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013257)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G08630 AT3G08640
fragaria_vesca FvH4_6g09440
malus_domestica MD04G1177700.v1.1 MD12G1193000.v1.1
prunus_persica Prupe.6G297600_v2.0.a1
pyrus_communis pycom04g15670
rosa_chinensis RchiOBHm_Chr3g0459911
rosa_laevigata RLG00000025052
rosa_multiflora Rmu_co8396657.1_g000001 Rmu_sc0000240.1_g000046 Rmu_sc0016534.1_g000001
rosa_roxburghii Rroxscaffold_6G00419920
rosa_rugosa Rorug03G0038700.1
rosa_samantha Rh3AG097500 Rh3BG100200 Rh3CG102000 Rh3DG101700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 662
Acc65I GGTACC 1 cut(s) 819
AccB1I GGYRCC 1 cut(s) 819
AccII CGCG 3 cut(s) 87, 115, 167
AciI CCGC 9 cut(s) 5, 14, 85, 113, 216, 219, 225, 231, 755
AclI AACGTT 1 cut(s) 827
AclWI GGATC 4 cut(s) 83, 130, 338, 967
AcuI CTGAAG 1 cut(s) 8
AfaI GTAC 6 cut(s) 366, 495, 503, 635, 685, 821
AfeI AGCGCT 1 cut(s) 394
AfiI CCNNNNNNNGG 4 cut(s) 119, 179, 361, 431
AflIII ACRYGT 1 cut(s) 504
AgeI ACCGGT 1 cut(s) 203
AgsI TTSAA 2 cut(s) 590, 832
AjnI CCWGG 1 cut(s) 550
AluBI AGCT 7 cut(s) 22, 341, 445, 512, 600, 668, 735
AluI AGCT 7 cut(s) 22, 341, 445, 512, 600, 668, 735
Alw26I GTCTC 1 cut(s) 109
AlwI GGATC 4 cut(s) 83, 130, 338, 967
Ama87I CYCGRG 1 cut(s) 730
Aor51HI AGCGCT 1 cut(s) 394
ApeKI GCWGC 3 cut(s) 338, 521, 668
ArsI GACNNNNNNTTYG 2 cut(s) 719, 751
AsiGI ACCGGT 1 cut(s) 203
Asp700I GAANNNNTTC 1 cut(s) 617
Asp718I GGTACC 1 cut(s) 819
AspLEI GCGC 2 cut(s) 179, 395
AspS9I GGNCC 2 cut(s) 296, 727
AsuHPI GGTGA 3 cut(s) 278, 419, 595
AsuII TTCGAA 1 cut(s) 738
AvaI CYCGRG 1 cut(s) 730
AvaII GGWCC 2 cut(s) 296, 727
BanI GGYRCC 1 cut(s) 819
BbsI GAAGAC 2 cut(s) 448, 986
BbvCI CCTCAGC 1 cut(s) 713
BbvI GCAGC 3 cut(s) 350, 533, 655
BccI CCATC 3 cut(s) 315, 580, 718
BceAI ACGGC 1 cut(s) 229
BciT130I CCWGG 1 cut(s) 552
BclI TGATCA 2 cut(s) 43, 72
BcoDI GTCTC 1 cut(s) 109
BfaI CTAG 3 cut(s) 99, 446, 654
BfmI CTRYAG 2 cut(s) 519, 669
BfoI RGCGCY 1 cut(s) 396
BfuAI ACCTGC 1 cut(s) 662
BisI GCNGC 6 cut(s) 6, 15, 217, 339, 522, 669
BlsI GCNGC 6 cut(s) 7, 16, 218, 340, 523, 670
Bme1390I CCNGG 1 cut(s) 552
Bme18I GGWCC 2 cut(s) 296, 727
BmeT110I CYCGRG 1 cut(s) 730
BmgT120I GGNCC 2 cut(s) 296, 727
BmiI GGNNCC 4 cut(s) 297, 535, 729, 821
BmrFI CCNGG 1 cut(s) 552
BoxI GACNNNNGTC 1 cut(s) 101
BpiI GAAGAC 2 cut(s) 448, 986
BpmI CTGGAG 1 cut(s) 942
Bpu10I CCTNAGC 1 cut(s) 713
Bpu14I TTCGAA 1 cut(s) 738
BsaBI GATNNNNATC 1 cut(s) 325
BsaJI CCNNGG 2 cut(s) 290, 316
BsaWI WCCGGW 1 cut(s) 203
Bsc4I CCNNNNNNNGG 4 cut(s) 119, 179, 361, 431
Bse118I RCCGGY 1 cut(s) 203
Bse8I GATNNNNATC 1 cut(s) 325
BseBI CCWGG 1 cut(s) 552
BseDI CCNNGG 2 cut(s) 290, 316
BseGI GGATG 4 cut(s) 312, 326, 957, 1012
BseJI GATNNNNATC 1 cut(s) 325
BseLI CCNNNNNNNGG 4 cut(s) 119, 179, 361, 431
BseMII CTCAG 3 cut(s) 362, 554, 704
BseRI GAGGAG 4 cut(s) 249, 252, 526, 989
BseXI GCAGC 3 cut(s) 350, 533, 655
Bsh1236I CGCG 3 cut(s) 87, 115, 167
BshNI GGYRCC 1 cut(s) 819
BshTI ACCGGT 1 cut(s) 203
BsiHKCI CYCGRG 1 cut(s) 730
BsiSI CCGG 2 cut(s) 180, 204
BslFI GGGAC 2 cut(s) 309, 637
BslI CCNNNNNNNGG 4 cut(s) 119, 179, 361, 431
BsmAI GTCTC 1 cut(s) 109
BsmFI GGGAC 2 cut(s) 309, 637
BsmI GAATGC 1 cut(s) 817
BsoBI CYCGRG 1 cut(s) 730
Bsp119I TTCGAA 1 cut(s) 738
Bsp1407I TGTACA 2 cut(s) 501, 633
Bsp143I GATC 8 cut(s) 43, 72, 88, 122, 326, 343, 378, 959
Bsp19I CCATGG 1 cut(s) 290
Bsp68I TCGCGA 1 cut(s) 167
BspACI CCGC 9 cut(s) 5, 14, 85, 113, 216, 219, 225, 231, 755
BspCNI CTCAG 3 cut(s) 361, 553, 705
BspFNI CGCG 3 cut(s) 87, 115, 167
BspLI GGNNCC 4 cut(s) 297, 535, 729, 821
BspMAI CTGCAG 2 cut(s) 523, 673
BspMI ACCTGC 1 cut(s) 662
BspPI GGATC 4 cut(s) 83, 130, 338, 967
BspT104I TTCGAA 1 cut(s) 738
BspT107I GGYRCC 1 cut(s) 819
BsrFI RCCGGY 1 cut(s) 203
BsrGI TGTACA 2 cut(s) 501, 633
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 2 cut(s) 290, 316
BssMI GATC 8 cut(s) 43, 72, 88, 122, 326, 343, 378, 959
BssT1I CCWWGG 2 cut(s) 290, 316
Bst2UI CCWGG 1 cut(s) 552
Bst4CI ACNGT 5 cut(s) 569, 607, 617, 766, 966
Bst6I CTCTTC 2 cut(s) 157, 369
BstAUI TGTACA 2 cut(s) 501, 633
BstBI TTCGAA 1 cut(s) 738
BstC8I GCNNGC 1 cut(s) 852
BstDEI CTNAG 4 cut(s) 348, 389, 540, 713
BstDSI CCRYGG 1 cut(s) 290
BstF5I GGATG 4 cut(s) 312, 326, 957, 1012
BstFNI CGCG 3 cut(s) 87, 115, 167
BstH2I RGCGCY 1 cut(s) 396
BstHHI GCGC 2 cut(s) 179, 395
BstKTI GATC 8 cut(s) 46, 75, 91, 125, 329, 346, 381, 962
BstMAI GTCTC 1 cut(s) 109
BstMBI GATC 8 cut(s) 43, 72, 88, 122, 326, 343, 378, 959
BstMWI GCNNNNNNNGC 4 cut(s) 11, 14, 222, 518
BstNI CCWGG 1 cut(s) 552
BstNSI RCATGY 1 cut(s) 508
BstPAI GACNNNNGTC 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 550
BstSFI CTRYAG 2 cut(s) 519, 669
BstUI CGCG 3 cut(s) 87, 115, 167
BstV1I GCAGC 3 cut(s) 350, 533, 655
BstV2I GAAGAC 2 cut(s) 448, 986
BtgI CCRYGG 1 cut(s) 290
BtsCI GGATG 4 cut(s) 312, 326, 957, 1012
BtsI GCAGTG 1 cut(s) 58
BtsIMutI CAGTG 1 cut(s) 58
BtuMI TCGCGA 1 cut(s) 167
BveI ACCTGC 1 cut(s) 662
Cac8I GCNNGC 1 cut(s) 852
CfoI GCGC 2 cut(s) 179, 395
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 2 cut(s) 296, 727
Csp6I GTAC 6 cut(s) 365, 494, 502, 634, 684, 820
CspAI ACCGGT 1 cut(s) 203
CspCI CAANNNNNGTGG 2 cut(s) 451, 486
CviAII CATG 4 cut(s) 291, 412, 499, 505
CviQI GTAC 6 cut(s) 365, 494, 502, 634, 684, 820
DdeI CTNAG 4 cut(s) 348, 389, 540, 713
DpnI GATC 8 cut(s) 45, 74, 90, 124, 328, 345, 380, 961
DpnII GATC 8 cut(s) 43, 72, 88, 122, 326, 343, 378, 959
Eam1104I CTCTTC 2 cut(s) 157, 369
EarI CTCTTC 2 cut(s) 157, 369
EciI GGCGGA 1 cut(s) 234
Eco130I CCWWGG 2 cut(s) 290, 316
Eco47I GGWCC 2 cut(s) 296, 727
Eco47III AGCGCT 1 cut(s) 394
Eco57I CTGAAG 1 cut(s) 8
Eco88I CYCGRG 1 cut(s) 730
EcoRII CCWGG 1 cut(s) 550
EcoT14I CCWWGG 2 cut(s) 290, 316
ErhI CCWWGG 2 cut(s) 290, 316
FaeI CATG 4 cut(s) 294, 415, 502, 508
FaqI GGGAC 2 cut(s) 309, 637
FatI CATG 4 cut(s) 290, 411, 498, 504
FauI CCCGC 1 cut(s) 92
FauNDI CATATG 2 cut(s) 582, 795
FbaI TGATCA 2 cut(s) 43, 72
Fnu4HI GCNGC 6 cut(s) 6, 15, 217, 339, 522, 669
FokI GGATG 3 cut(s) 299, 333, 964
Fsp4HI GCNGC 6 cut(s) 6, 15, 217, 339, 522, 669
FspBI CTAG 3 cut(s) 99, 446, 654
GlaI GCGC 2 cut(s) 178, 394
GluI GCNGC 6 cut(s) 6, 15, 217, 339, 522, 669
GsuI CTGGAG 1 cut(s) 942
HaeII RGCGCY 1 cut(s) 396
HapII CCGG 2 cut(s) 180, 204
HhaI GCGC 2 cut(s) 179, 395
Hin1II CATG 4 cut(s) 294, 415, 502, 508
Hin6I GCGC 2 cut(s) 177, 393
HinP1I GCGC 2 cut(s) 177, 393
HindIII AAGCTT 1 cut(s) 20
HinfI GANTC 5 cut(s) 102, 281, 481, 555, 625
HpaII CCGG 2 cut(s) 180, 204
HphI GGTGA 3 cut(s) 278, 419, 595
Hpy166II GTNNAC 1 cut(s) 634
Hpy188I TCNGA 4 cut(s) 43, 434, 543, 994
Hpy188III TCNNGA 4 cut(s) 166, 330, 420, 622
Hpy8I GTNNAC 1 cut(s) 634
HpyAV CCTTC 1 cut(s) 997
HpyCH4III ACNGT 5 cut(s) 569, 607, 617, 766, 966
HpyCH4IV ACGT 1 cut(s) 827
HpyCH4V TGCA 5 cut(s) 338, 521, 671, 815, 908
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 14, 222, 518
HpyF3I CTNAG 4 cut(s) 348, 389, 540, 713
HpySE526I ACGT 1 cut(s) 827
Hsp92II CATG 4 cut(s) 294, 415, 502, 508
HspAI GCGC 2 cut(s) 177, 393
KpnI GGTACC 1 cut(s) 823
Ksp22I TGATCA 2 cut(s) 43, 72
Kzo9I GATC 8 cut(s) 43, 72, 88, 122, 326, 343, 378, 959
LmnI GCTCC 2 cut(s) 517, 539
LpnPI CCDG 9 cut(s) 193, 217, 246, 537, 564, 578, 657, 836, 906
Lsp1109I GCAGC 3 cut(s) 350, 533, 655
MaeI CTAG 3 cut(s) 99, 446, 654
MaeII ACGT 1 cut(s) 827
MaeIII GTNAC 1 cut(s) 407
MalI GATC 8 cut(s) 45, 74, 90, 124, 328, 345, 380, 961
MboI GATC 8 cut(s) 43, 72, 88, 122, 326, 343, 378, 959
MboII GAAGA 7 cut(s) 144, 290, 386, 448, 730, 733, 991
MluCI AATT 4 cut(s) 145, 427, 487, 772
MlyI GAGTC 2 cut(s) 111, 619
MmeI TCCRAC 1 cut(s) 116
MroXI GAANNNNTTC 1 cut(s) 617
MseI TTAA 5 cut(s) 360, 437, 771, 779, 879
MslI CAYNNNNRTG 3 cut(s) 289, 503, 608
MspA1I CMGCKG 1 cut(s) 341
MspI CCGG 2 cut(s) 180, 204
MspR9I CCNGG 1 cut(s) 552
Mva1269I GAATGC 1 cut(s) 817
MvaI CCWGG 1 cut(s) 552
MvnI CGCG 3 cut(s) 87, 115, 167
MwoI GCNNNNNNNGC 4 cut(s) 11, 14, 222, 518
NcoI CCATGG 1 cut(s) 290
NdeI CATATG 2 cut(s) 582, 795
NdeII GATC 8 cut(s) 43, 72, 88, 122, 326, 343, 378, 959
NlaIII CATG 4 cut(s) 294, 415, 502, 508
NlaIV GGNNCC 4 cut(s) 297, 535, 729, 821
NmuCI GTSAC 1 cut(s) 407
NruI TCGCGA 1 cut(s) 167
NspI RCATGY 1 cut(s) 508
NspV TTCGAA 1 cut(s) 738
PciI ACATGT 1 cut(s) 504
PcsI WCGNNNNNNNCGW 1 cut(s) 438
PctI GAATGC 1 cut(s) 817
PdmI GAANNNNTTC 1 cut(s) 617
PfeI GAWTC 3 cut(s) 281, 481, 555
PinAI ACCGGT 1 cut(s) 203
PkrI GCNGC 6 cut(s) 7, 16, 218, 340, 523, 670
PleI GAGTC 2 cut(s) 110, 619
PpsI GAGTC 2 cut(s) 110, 619
PscI ACATGT 1 cut(s) 504
PshAI GACNNNNGTC 1 cut(s) 101
Psp1406I AACGTT 1 cut(s) 827
Psp6I CCWGG 1 cut(s) 550
PspGI CCWGG 1 cut(s) 550
PspN4I GGNNCC 4 cut(s) 297, 535, 729, 821
PspPI GGNCC 2 cut(s) 296, 727
PstI CTGCAG 2 cut(s) 523, 673
PvuII CAGCTG 1 cut(s) 341
RruI TCGCGA 1 cut(s) 167
RsaI GTAC 6 cut(s) 366, 495, 503, 635, 685, 821
RsaNI GTAC 6 cut(s) 365, 494, 502, 634, 684, 820
RseI CAYNNNNRTG 3 cut(s) 289, 503, 608
SaqAI TTAA 5 cut(s) 360, 437, 771, 779, 879
SatI GCNGC 6 cut(s) 6, 15, 217, 339, 522, 669
Sau3AI GATC 8 cut(s) 43, 72, 88, 122, 326, 343, 378, 959
Sau96I GGNCC 2 cut(s) 296, 727
SchI GAGTC 2 cut(s) 111, 619
ScrFI CCNGG 1 cut(s) 552
SfcI CTRYAG 2 cut(s) 519, 669
SfuI TTCGAA 1 cut(s) 738
SinI GGWCC 2 cut(s) 296, 727
SmiMI CAYNNNNRTG 3 cut(s) 289, 503, 608
Sse9I AATT 4 cut(s) 145, 427, 487, 772
SsiI CCGC 9 cut(s) 5, 14, 85, 113, 216, 219, 225, 231, 755
SspMI CTAG 3 cut(s) 99, 446, 654
StyD4I CCNGG 1 cut(s) 550
StyI CCWWGG 2 cut(s) 290, 316
TaaI ACNGT 5 cut(s) 569, 607, 617, 766, 966
TaiI ACGT 1 cut(s) 830
TaqI TCGA 2 cut(s) 479, 738
TasI AATT 4 cut(s) 145, 427, 487, 772
TatI WGTACW 2 cut(s) 501, 633
TauI GCSGC 3 cut(s) 8, 17, 219
TfiI GAWTC 3 cut(s) 281, 481, 555
Tru1I TTAA 5 cut(s) 360, 437, 771, 779, 879
Tru9I TTAA 5 cut(s) 360, 437, 771, 779, 879
TscAI CASTG 1 cut(s) 58
TseFI GTSAC 1 cut(s) 407
TseI GCWGC 3 cut(s) 338, 521, 668
Tsp45I GTSAC 1 cut(s) 407
TspDTI ATGAA 2 cut(s) 301, 626
TspRI CASTG 1 cut(s) 58
VpaK11BI GGWCC 2 cut(s) 296, 727
XceI RCATGY 1 cut(s) 508
XcmI CCANNNNNNNNNTGG 1 cut(s) 830
XmnI GAANNNNTTC 1 cut(s) 617
XspI CTAG 3 cut(s) 99, 446, 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.