FvH4_6g09440

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013257
Physical Location & Seq
Forward (+)
5615539 .. 5617406
1868 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g09440.t1

Sequence Viewer

Length: 1077 bp
ATGGCCGCCGCCGCCCAGCTCCGCTGTTCCACTCTCCCCAAACCCCACTCCTCTCTTTCCGACCACCGCCGCAACCCCACCACCAACCTCAATTCCTCAATCTCCTTCCCCTATTCCAAAACCCTAAATCATAAAGCTCTCTCTTTTGGCCCGAAGCCGAATCGGGACGGAAGGCCCGATCTTTCGTTTTCCGGCGGGAATGGTGCCGACCGAGGCGGCGCCGGCGGTGGAGGCGGAGGAGGTAGCGGCGATTGGAGCCGAGGTGATGAGAATGAAGAATCGAAACCCTCGAAATCTTTGTTTGAGGGTTTTGGGCTTTTGGGGATGTTTCTGAATGGGTGGAGATCGAGAGTCGCCGCCGATCCTCAGTTTCCGTTCAAGGTTTTGATGGAGGAGGTCGTCGGAGTGAGCTCCTGCGTCCTCGGCGACATGGCTTCCCGACCCAATTTCGGCCTCAACGAGCTCGATTTCGTCTTCTCTACTCTCGTTGTCGGCTGCATTCTAAACTTCACTCTCATGTATCTGCTGGCGCCGAGCTTGTCCGCCACCGCCGCCACTCTGCCGTCGATCTTCGCCAGCTGCCCGGCGAGCCATATGTTCGAGCCGGGCTCTTTCGGGCTGATGAGTCGTTTAGGGACGTTTGTCTACAAAGGAGCTGTCTTTGCAGGAGTTGGATTCGCTGCCGGGCTGGCCGGGACTGCGCTGTCGAATGGGCTGATCAAGCTGAGGAAGAAGATGGATCCCGAGTTTGAGACTCCCAACAAGCCTCCACCGACATTGTTGAATGCGGTTACTTGGGCAATTCACATGGGTGTGAGCAGCAATTTGAGGTACCAGACGCTGAATGGGGTGGAGTATGTGTTGGGGAAGGGGCTGCCACCGCTGGCATTTAAGTCTTCGGTGATTGTTCTGAGGTGCTTGAACAATGTGCTTGGTGGGATGACATTTGTGCTTCTGGCGAGGTTGACAGGATCGCAGAGTGCTGCTGAGAAGCTGGAGATTGGATCGGCTGCAGAGAAGGAGAAACTGCTGGAGGAGAGTGTGGATTTGCAGGGCAATCAGTCGACTTACAAGTGA

Protein Analysis

359

Amino Acids

37.87

Weight (kDa)

8.9

Isoelectric Point (pI)

37.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RETICULATA-like PF11891 117 - 284 2.5e-63 Protein RETICULATA-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013257)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G08630 AT3G08640
fragaria_vesca FvH4_6g09440
malus_domestica MD04G1177700.v1.1 MD12G1193000.v1.1
prunus_persica Prupe.6G297600_v2.0.a1
pyrus_communis pycom04g15670
rosa_chinensis RchiOBHm_Chr3g0459911
rosa_laevigata RLG00000025052
rosa_multiflora Rmu_co8396657.1_g000001 Rmu_sc0000240.1_g000046 Rmu_sc0016534.1_g000001
rosa_roxburghii Rroxscaffold_6G00419920
rosa_rugosa Rorug03G0038700.1
rosa_samantha Rh3AG097500 Rh3BG100200 Rh3CG102000 Rh3DG101700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 703
Acc65I GGTACC 1 cut(s) 831
AccB1I GGYRCC 4 cut(s) 203, 218, 529, 831
AccI GTMKAC 2 cut(s) 645, 1064
AclWI GGATC 5 cut(s) 356, 734, 747, 979, 1012
AcoI YGGCCR 2 cut(s) 3, 690
AcyI GRCGYC 2 cut(s) 219, 530
AfaI GTAC 1 cut(s) 833
AfiI CCNNNNNNNGG 1 cut(s) 449
AgsI TTSAA 3 cut(s) 379, 784, 922
AleI CACNNNNGTG 1 cut(s) 810
AluBI AGCT 9 cut(s) 19, 137, 411, 463, 537, 579, 656, 724, 994
AluI AGCT 9 cut(s) 19, 137, 411, 463, 537, 579, 656, 724, 994
Alw21I GWGCWC 2 cut(s) 413, 465
Alw26I GTCTC 1 cut(s) 746
AlwI GGATC 5 cut(s) 356, 734, 747, 979, 1012
AlwNI CAGNNNCTG 1 cut(s) 841
Ama87I CYCGRG 1 cut(s) 743
AoxI GGCC 5 cut(s) 3, 148, 173, 451, 690
ApeKI GCWGC 7 cut(s) 495, 579, 680, 819, 874, 983, 1010
ArsI GACNNNNNNTTYG 2 cut(s) 642, 674
Asp718I GGTACC 1 cut(s) 831
AspLEI GCGC 3 cut(s) 221, 532, 703
AspS9I GGNCC 2 cut(s) 149, 174
AsuC2I CCSGG 4 cut(s) 584, 606, 685, 694
AsuHPI GGTGA 2 cut(s) 275, 913
AvaI CYCGRG 1 cut(s) 743
BamHI GGATCC 1 cut(s) 739
BanI GGYRCC 4 cut(s) 203, 218, 529, 831
BanII GRGCYC 3 cut(s) 413, 465, 611
BbsI GAAGAC 2 cut(s) 466, 888
Bbv12I GWGCWC 2 cut(s) 413, 465
BbvCI CCTCAGC 1 cut(s) 725
BbvI GCAGC 7 cut(s) 482, 566, 667, 831, 861, 970, 997
BccI CCATC 2 cut(s) 382, 730
BceAI ACGGC 1 cut(s) 547
BclI TGATCA 1 cut(s) 717
BcnI CCSGG 4 cut(s) 584, 606, 685, 694
BcoDI GTCTC 1 cut(s) 746
BfmI CTRYAG 1 cut(s) 1011
BfoI RGCGCY 2 cut(s) 222, 533
BglI GCCNNNNNGGC 1 cut(s) 689
Bme1390I CCNGG 4 cut(s) 584, 606, 685, 694
BmeT110I CYCGRG 1 cut(s) 743
BmgT120I GGNCC 2 cut(s) 149, 174
BmiI GGNNCC 6 cut(s) 205, 220, 257, 531, 741, 833
BmrFI CCNGG 4 cut(s) 584, 606, 685, 694
BoxI GACNNNNGTC 1 cut(s) 641
BpiI GAAGAC 2 cut(s) 466, 888
BplI GAGNNNNNCTC 2 cut(s) 593, 625
BpmI CTGGAG 2 cut(s) 1016, 1052
Bpu10I CCTNAGC 1 cut(s) 725
BpuMI CCSGG 4 cut(s) 584, 606, 685, 694
BsaHI GRCGYC 2 cut(s) 219, 530
BsaJI CCNNGG 3 cut(s) 211, 259, 421
BsaXI ACNNNNNCTCC 4 cut(s) 247, 277, 845, 875
Bsc4I CCNNNNNNNGG 1 cut(s) 449
Bse118I RCCGGY 1 cut(s) 221
BseDI CCNNGG 3 cut(s) 211, 259, 421
BseGI GGATG 2 cut(s) 330, 945
BseLI CCNNNNNNNGG 1 cut(s) 449
BseMII CTCAG 4 cut(s) 380, 716, 902, 978
BseRI GAGGAG 4 cut(s) 40, 252, 407, 1049
BseXI GCAGC 7 cut(s) 482, 566, 667, 831, 861, 970, 997
BseYI CCCAGC 1 cut(s) 15
Bsh1285I CGRYCG 1 cut(s) 211
BshFI GGCC 5 cut(s) 5, 150, 175, 453, 692
BshNI GGYRCC 4 cut(s) 203, 218, 529, 831
BsiEI CGRYCG 1 cut(s) 211
BsiHKAI GWGCWC 2 cut(s) 413, 465
BsiHKCI CYCGRG 1 cut(s) 743
BsiSI CCGG 6 cut(s) 192, 222, 584, 605, 684, 693
BslFI GGGAC 3 cut(s) 179, 649, 709
BslI CCNNNNNNNGG 1 cut(s) 449
BsmAI GTCTC 1 cut(s) 746
BsmFI GGGAC 3 cut(s) 179, 649, 709
BsmI GAATGC 2 cut(s) 498, 790
BsnI GGCC 5 cut(s) 5, 150, 175, 453, 692
BsoBI CYCGRG 1 cut(s) 743
Bsp1286I GDGCHC 3 cut(s) 413, 465, 611
Bsp143I GATC 8 cut(s) 178, 344, 361, 567, 717, 739, 971, 1004
BspANI GGCC 5 cut(s) 5, 150, 175, 453, 692
BspCNI CTCAG 4 cut(s) 379, 717, 903, 979
BspLI GGNNCC 6 cut(s) 205, 220, 257, 531, 741, 833
BspMAI CTGCAG 1 cut(s) 1015
BspPI GGATC 5 cut(s) 356, 734, 747, 979, 1012
BspT107I GGYRCC 4 cut(s) 203, 218, 529, 831
BsrFI RCCGGY 1 cut(s) 221
BssAI RCCGGY 1 cut(s) 221
BssECI CCNNGG 3 cut(s) 211, 259, 421
BssMI GATC 8 cut(s) 178, 344, 361, 567, 717, 739, 971, 1004
BssNI GRCGYC 2 cut(s) 219, 530
BstACI GRCGYC 2 cut(s) 219, 530
BstC8I GCNNGC 6 cut(s) 223, 528, 577, 589, 690, 885
BstDEI CTNAG 4 cut(s) 366, 725, 911, 987
BstF5I GGATG 2 cut(s) 330, 945
BstH2I RGCGCY 2 cut(s) 222, 533
BstHHI GCGC 3 cut(s) 221, 532, 703
BstKTI GATC 8 cut(s) 181, 347, 364, 570, 720, 742, 974, 1007
BstMAI GTCTC 1 cut(s) 746
BstMBI GATC 8 cut(s) 178, 344, 361, 567, 717, 739, 971, 1004
BstMCI CGRYCG 1 cut(s) 211
BstPAI GACNNNNGTC 1 cut(s) 641
BstSCI CCNGG 4 cut(s) 582, 604, 683, 692
BstSFI CTRYAG 1 cut(s) 1011
BstV1I GCAGC 7 cut(s) 482, 566, 667, 831, 861, 970, 997
BstV2I GAAGAC 2 cut(s) 466, 888
BstX2I RGATCY 1 cut(s) 739
BstYI RGATCY 1 cut(s) 739
BsuRI GGCC 5 cut(s) 5, 150, 175, 453, 692
BtsCI GGATG 2 cut(s) 330, 945
Cac8I GCNNGC 6 cut(s) 223, 528, 577, 589, 690, 885
CaiI CAGNNNCTG 1 cut(s) 841
CfoI GCGC 3 cut(s) 221, 532, 703
Cfr10I RCCGGY 1 cut(s) 221
Cfr13I GGNCC 2 cut(s) 149, 174
CseI GACGC 2 cut(s) 406, 847
Csp6I GTAC 1 cut(s) 832
CspCI CAANNNNNGTGG 2 cut(s) 759, 794
CviAII CATG 3 cut(s) 430, 517, 808
CviQI GTAC 1 cut(s) 832
DdeI CTNAG 4 cut(s) 366, 725, 911, 987
DinI GGCGCC 2 cut(s) 220, 531
DpnI GATC 8 cut(s) 180, 346, 363, 569, 719, 741, 973, 1006
DpnII GATC 8 cut(s) 178, 344, 361, 567, 717, 739, 971, 1004
DrdI GACNNNNNNGTC 1 cut(s) 703
DseDI GACNNNNNNGTC 1 cut(s) 703
EaeI YGGCCR 2 cut(s) 3, 690
EciI GGCGGA 2 cut(s) 249, 532
Ecl136II GAGCTC 2 cut(s) 411, 463
Eco24I GRGCYC 3 cut(s) 413, 465, 611
Eco53kI GAGCTC 2 cut(s) 411, 463
Eco88I CYCGRG 1 cut(s) 743
EcoICRI GAGCTC 2 cut(s) 411, 463
EcoT38I GRGCYC 3 cut(s) 413, 465, 611
EgeI GGCGCC 2 cut(s) 220, 531
EheI GGCGCC 2 cut(s) 220, 531
FaeI CATG 3 cut(s) 433, 520, 811
FaiI YATR 7 cut(s) 132, 431, 518, 594, 596, 809, 858
FaqI GGGAC 3 cut(s) 179, 649, 709
FatI CATG 3 cut(s) 429, 516, 807
FauI CCCGC 1 cut(s) 188
FauNDI CATATG 1 cut(s) 594
FbaI TGATCA 1 cut(s) 717
FblI GTMKAC 2 cut(s) 645, 1064
FokI GGATG 2 cut(s) 337, 952
FriOI GRGCYC 3 cut(s) 413, 465, 611
GlaI GCGC 3 cut(s) 220, 531, 702
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 2 cut(s) 1016, 1052
HaeII RGCGCY 2 cut(s) 222, 533
HaeIII GGCC 5 cut(s) 5, 150, 175, 453, 692
HapII CCGG 6 cut(s) 192, 222, 584, 605, 684, 693
HgaI GACGC 2 cut(s) 406, 847
HhaI GCGC 3 cut(s) 221, 532, 703
Hin1I GRCGYC 2 cut(s) 219, 530
Hin1II CATG 3 cut(s) 433, 520, 811
Hin6I GCGC 3 cut(s) 219, 530, 701
HinP1I GCGC 3 cut(s) 219, 530, 701
HincII GTYRAC 2 cut(s) 966, 1065
HindII GTYRAC 2 cut(s) 966, 1065
HinfI GANTC 6 cut(s) 160, 278, 351, 625, 675, 754
HpaII CCGG 6 cut(s) 192, 222, 584, 605, 684, 693
HphI GGTGA 2 cut(s) 275, 913
Hpy166II GTNNAC 3 cut(s) 646, 966, 1065
Hpy188I TCNGA 4 cut(s) 61, 333, 404, 912
Hpy188III TCNNGA 4 cut(s) 164, 348, 438, 743
Hpy8I GTNNAC 3 cut(s) 646, 966, 1065
Hpy99I CGWCG 2 cut(s) 404, 568
HpyAV CCTTC 4 cut(s) 115, 165, 862, 1012
HpyCH4IV ACGT 1 cut(s) 638
HpyCH4V TGCA 4 cut(s) 498, 665, 1013, 1051
HpyF3I CTNAG 4 cut(s) 366, 725, 911, 987
HpySE526I ACGT 1 cut(s) 638
Hsp92I GRCGYC 2 cut(s) 219, 530
Hsp92II CATG 3 cut(s) 433, 520, 811
HspAI GCGC 3 cut(s) 219, 530, 701
KasI GGCGCC 2 cut(s) 218, 529
KpnI GGTACC 1 cut(s) 835
KroI GCCGGC 1 cut(s) 221
KroNI GCCGGC 1 cut(s) 223
Ksp22I TGATCA 1 cut(s) 717
Kzo9I GATC 8 cut(s) 178, 344, 361, 567, 717, 739, 971, 1004
LmnI GCTCC 4 cut(s) 24, 255, 416, 653
Lsp1109I GCAGC 7 cut(s) 482, 566, 667, 831, 861, 970, 997
MaeII ACGT 1 cut(s) 638
MaeIII GTNAC 1 cut(s) 790
MalI GATC 8 cut(s) 180, 346, 363, 569, 719, 741, 973, 1006
MboI GATC 8 cut(s) 178, 344, 361, 567, 717, 739, 971, 1004
MboII GAAGA 6 cut(s) 287, 466, 562, 742, 745, 888
MflI RGATCY 1 cut(s) 739
MhlI GDGCHC 3 cut(s) 413, 465, 611
MluCI AATT 4 cut(s) 91, 445, 801, 823
Mly113I GGCGCC 2 cut(s) 219, 530
MlyI GAGTC 3 cut(s) 360, 634, 748
MmeI TCCRAC 3 cut(s) 84, 382, 652
MreI CGCCGGCG 1 cut(s) 221
MroNI GCCGGC 1 cut(s) 221
MseI TTAA 1 cut(s) 891
MslI CAYNNNNRTG 3 cut(s) 515, 810, 812
MspA1I CMGCKG 3 cut(s) 24, 579, 883
MspI CCGG 6 cut(s) 192, 222, 584, 605, 684, 693
MspR9I CCNGG 4 cut(s) 584, 606, 685, 694
Mva1269I GAATGC 2 cut(s) 498, 790
NaeI GCCGGC 1 cut(s) 223
NarI GGCGCC 2 cut(s) 219, 530
NciI CCSGG 4 cut(s) 584, 606, 685, 694
NdeI CATATG 1 cut(s) 594
NdeII GATC 8 cut(s) 178, 344, 361, 567, 717, 739, 971, 1004
NgoMIV GCCGGC 1 cut(s) 221
NlaIII CATG 3 cut(s) 433, 520, 811
NlaIV GGNNCC 6 cut(s) 205, 220, 257, 531, 741, 833
NmeAIII GCCGAG 3 cut(s) 284, 402, 558
OliI CACNNNNGTG 1 cut(s) 810
PcsI WCGNNNNNNNCGW 3 cut(s) 174, 287, 456
PctI GAATGC 2 cut(s) 498, 790
PdiI GCCGGC 1 cut(s) 223
PfeI GAWTC 3 cut(s) 160, 278, 675
PleI GAGTC 3 cut(s) 359, 633, 748
PluTI GGCGCC 2 cut(s) 222, 533
PpsI GAGTC 3 cut(s) 359, 633, 748
PshAI GACNNNNGTC 1 cut(s) 641
Psp124BI GAGCTC 2 cut(s) 413, 465
PspFI CCCAGC 1 cut(s) 15
PspN4I GGNNCC 6 cut(s) 205, 220, 257, 531, 741, 833
PspPI GGNCC 2 cut(s) 149, 174
PstI CTGCAG 1 cut(s) 1015
PstNI CAGNNNCTG 1 cut(s) 841
PsuI RGATCY 1 cut(s) 739
PvuII CAGCTG 1 cut(s) 579
RsaI GTAC 1 cut(s) 833
RsaNI GTAC 1 cut(s) 832
RseI CAYNNNNRTG 3 cut(s) 515, 810, 812
SacI GAGCTC 2 cut(s) 413, 465
SalI GTCGAC 1 cut(s) 1063
SaqAI TTAA 1 cut(s) 891
Sau3AI GATC 8 cut(s) 178, 344, 361, 567, 717, 739, 971, 1004
Sau96I GGNCC 2 cut(s) 149, 174
SchI GAGTC 3 cut(s) 360, 634, 748
ScrFI CCNGG 4 cut(s) 584, 606, 685, 694
SduI GDGCHC 3 cut(s) 413, 465, 611
SfcI CTRYAG 1 cut(s) 1011
SfoI GGCGCC 2 cut(s) 220, 531
SgrAI CRCCGGYG 1 cut(s) 221
SmiMI CAYNNNNRTG 3 cut(s) 515, 810, 812
Sse9I AATT 4 cut(s) 91, 445, 801, 823
SspDI GGCGCC 2 cut(s) 218, 529
SstI GAGCTC 2 cut(s) 413, 465
StyD4I CCNGG 4 cut(s) 582, 604, 683, 692
TaiI ACGT 1 cut(s) 641
TaqI TCGA 8 cut(s) 281, 290, 347, 465, 566, 600, 707, 1064
TaqII GACCGA 1 cut(s) 225
TasI AATT 4 cut(s) 91, 445, 801, 823
TauI GCSGC 8 cut(s) 8, 11, 14, 72, 219, 249, 359, 554
TfiI GAWTC 3 cut(s) 160, 278, 675
Tru1I TTAA 1 cut(s) 891
Tru9I TTAA 1 cut(s) 891
TseI GCWGC 7 cut(s) 495, 579, 680, 819, 874, 983, 1010
TspDTI ATGAA 1 cut(s) 288
TspGWI ACGGA 2 cut(s) 183, 363
XcmI CCANNNNNNNNNTGG 1 cut(s) 842
XmiI GTMKAC 2 cut(s) 645, 1064
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.