Rroxscaffold_6G00419920

Protein RETICULATA-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0013257
Physical Location & Seq
Reverse (-)
41281879 .. 41284358
2480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00419920.1

Sequence Viewer

Length: 1071 bp
ATGGCCGCCACCGCCCAGCTCCGCTGCTCTACTCTGGCCAAAGCCCACTCCTGTCTCTCCGGCAACCGCCGCAGCATCCCCAGTAACCCCGATTCTTCAATTTCTTTCCCCTATTCCAAAACCCTAAATCGCGGCCTTTCTTTCGGACCCAGACCCATTTTGGACGGAAGGCCCGATCTTTCGTTTTCCGGCGGCAATGGCGGCAGCGGTGCCGGCCGGGGAGGCGCCGGCGGAGGGGGAAGCGGCGATTGGAGCCGCGGAGATGAGAATGACGAGTCGAAACCCTCGACGTCGCCGGTTCAGGGTTTTGGGCTTCTGGGTATGTTTCTGAATGGATGGAGATCTAGAGTCGCCGCCGATCCTCAGTTTCCGTTCAAAGTTTTGATGGAGGAGGTCGTCGGAGTCAGCTCCTGCGTCCTCGGCGACATGGCTTCCCGGCCCAATTTCGGCCTCAACGAGCTGGATTTCGTCTTCTCGACTCTCGTCGTCGGCTGCATTCTGAACTTCACTCTCATGTATCTACTGGCGCCGAGCTTGTCCGCCTCCGCCGCAACTCTCCCTTCGATCTTCGCCAGCTGTCCGGCGAGCCACATGTTCGAACCGGGCTCTTTCGGGCTGCTGAATCGCCTCGGGACGTTGGTCTACAAAGGAGCAGTCTTTGCCGGAGTTGGATTCGCCGCCGGGCTTGCCGGTACTGCGCTTTCGAATGGGCTGATCAAGCTGAGGAAGAAGATGGACCCGGAGTTTGAGACCCCGAATAAGCCTCCACCGACATTGTTGAATGCGGTGACTTGGGCAATTCACATGGGTGTGAGCAGCAATTTGAGGTACCAGACATTGAATGGGGTGGAGTATGTGTTGGGGAAGGGGCTGCTGCCGCTGGCGTTTAAGTCTTCGGTGGTGGTTCTGAGGTGCTTGAACAATGTGCTTGGTGGGATGACATTTGTGCTGCTGGCGAGGTTGACAGGATCGCAGAGTGCTGCTGAGAAGCCGGAGATTGGATCGGCTGCAGAGAAGGAAAAATTGGTGGAGGAGAGTGCGGATTTGAGCAATCAGTCGACTTACAAGTGA

Protein Analysis

356

Amino Acids

37.27

Weight (kDa)

8.87

Isoelectric Point (pI)

38.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RETICULATA-like PF11891 116 - 283 5.4e-63 Protein RETICULATA-related
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013257)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G08630 AT3G08640
fragaria_vesca FvH4_6g09440
malus_domestica MD04G1177700.v1.1 MD12G1193000.v1.1
prunus_persica Prupe.6G297600_v2.0.a1
pyrus_communis pycom04g15670
rosa_chinensis RchiOBHm_Chr3g0459911
rosa_laevigata RLG00000025052
rosa_multiflora Rmu_co8396657.1_g000001 Rmu_sc0000240.1_g000046 Rmu_sc0016534.1_g000001
rosa_roxburghii Rroxscaffold_6G00419920
rosa_rugosa Rorug03G0038700.1
rosa_samantha Rh3AG097500 Rh3BG100200 Rh3CG102000 Rh3DG101700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 293
Acc65I GGTACC 1 cut(s) 828
AccB1I GGYRCC 4 cut(s) 209, 224, 526, 828
AccI GTMKAC 2 cut(s) 642, 1058
AccII CGCG 2 cut(s) 132, 258
AclWI GGATC 3 cut(s) 353, 976, 1009
AcoI YGGCCR 3 cut(s) 3, 36, 214
AcyI GRCGYC 3 cut(s) 225, 290, 527
AfaI GTAC 2 cut(s) 694, 830
AfiI CCNNNNNNNGG 4 cut(s) 234, 302, 446, 998
AflIII ACRYGT 1 cut(s) 591
AgsI TTSAA 5 cut(s) 99, 376, 781, 841, 919
AjuI GAANNNNNNNTTGG 4 cut(s) 232, 264, 1007, 1039
AleI CACNNNNGTG 1 cut(s) 807
AluBI AGCT 6 cut(s) 19, 408, 460, 534, 576, 721
AluI AGCT 6 cut(s) 19, 408, 460, 534, 576, 721
Alw26I GTCTC 2 cut(s) 59, 743
AlwI GGATC 3 cut(s) 353, 976, 1009
AlwNI CAGNNNCTG 1 cut(s) 411
Ama87I CYCGRG 1 cut(s) 629
AoxI GGCC 7 cut(s) 3, 36, 133, 170, 214, 437, 448
ArsI GACNNNNNNTTYG 4 cut(s) 639, 671, 728, 760
Asp718I GGTACC 1 cut(s) 828
AspLEI GCGC 3 cut(s) 227, 529, 700
AspS9I GGNCC 4 cut(s) 146, 171, 438, 736
AsuC2I CCSGG 5 cut(s) 218, 436, 603, 682, 740
AsuHPI GGTGA 1 cut(s) 799
AsuII TTCGAA 2 cut(s) 597, 704
AvaI CYCGRG 1 cut(s) 629
AvaII GGWCC 2 cut(s) 146, 736
BalI TGGCCA 1 cut(s) 38
BanI GGYRCC 4 cut(s) 209, 224, 526, 828
BanII GRGCYC 1 cut(s) 608
BbsI GAAGAC 2 cut(s) 463, 885
BbvCI CCTCAGC 1 cut(s) 722
BccI CCATC 3 cut(s) 330, 379, 727
BclI TGATCA 1 cut(s) 714
BcnI CCSGG 5 cut(s) 218, 436, 603, 682, 740
BcoDI GTCTC 2 cut(s) 59, 743
BfaI CTAG 1 cut(s) 345
BfmI CTRYAG 1 cut(s) 1008
BfoI RGCGCY 2 cut(s) 228, 530
BglI GCCNNNNNGGC 1 cut(s) 222
BglII AGATCT 1 cut(s) 341
Bme1390I CCNGG 5 cut(s) 218, 436, 603, 682, 740
Bme18I GGWCC 2 cut(s) 146, 736
BmeT110I CYCGRG 1 cut(s) 629
BmgT120I GGNCC 4 cut(s) 146, 171, 438, 736
BmiI GGNNCC 7 cut(s) 148, 211, 226, 254, 528, 738, 830
BmrFI CCNGG 5 cut(s) 218, 436, 603, 682, 740
BmrI ACTGGG 1 cut(s) 75
BmsI GCATC 1 cut(s) 84
BmuI ACTGGG 1 cut(s) 75
BoxI GACNNNNGTC 2 cut(s) 482, 638
BpiI GAAGAC 2 cut(s) 463, 885
Bpu10I CCTNAGC 1 cut(s) 722
Bpu14I TTCGAA 2 cut(s) 597, 704
BpuMI CCSGG 5 cut(s) 218, 436, 603, 682, 740
BsaBI GATNNNNATC 1 cut(s) 340
BsaHI GRCGYC 3 cut(s) 225, 290, 527
BsaI GGTCTC 1 cut(s) 743
BsaJI CCNNGG 4 cut(s) 217, 256, 418, 628
BsaXI ACNNNNNCTCC 2 cut(s) 842, 872
Bsc4I CCNNNNNNNGG 4 cut(s) 234, 302, 446, 998
Bse118I RCCGGY 4 cut(s) 212, 227, 295, 689
Bse1I ACTGG 2 cut(s) 81, 528
Bse3DI GCAATG 1 cut(s) 202
Bse8I GATNNNNATC 1 cut(s) 340
BseDI CCNNGG 4 cut(s) 217, 256, 418, 628
BseGI GGATG 3 cut(s) 75, 341, 942
BseJI GATNNNNATC 1 cut(s) 340
BseLI CCNNNNNNNGG 4 cut(s) 234, 302, 446, 998
BseMI GCAATG 1 cut(s) 202
BseMII CTCAG 4 cut(s) 377, 713, 899, 975
BseNI ACTGG 2 cut(s) 81, 528
BseRI GAGGAG 2 cut(s) 404, 1046
BseX3I CGGCCG 1 cut(s) 214
BseYI CCCAGC 1 cut(s) 15
Bsh1236I CGCG 2 cut(s) 132, 258
Bsh1285I CGRYCG 1 cut(s) 217
BshFI GGCC 7 cut(s) 5, 38, 135, 172, 216, 439, 450
BshNI GGYRCC 4 cut(s) 209, 224, 526, 828
BsiEI CGRYCG 1 cut(s) 217
BsiHKCI CYCGRG 1 cut(s) 629
BslFI GGGAC 1 cut(s) 646
BslI CCNNNNNNNGG 4 cut(s) 234, 302, 446, 998
BsmAI GTCTC 2 cut(s) 59, 743
BsmFI GGGAC 1 cut(s) 646
BsmI GAATGC 2 cut(s) 495, 787
BsnI GGCC 7 cut(s) 5, 38, 135, 172, 216, 439, 450
Bso31I GGTCTC 1 cut(s) 743
BsoBI CYCGRG 1 cut(s) 629
Bsp119I TTCGAA 2 cut(s) 597, 704
Bsp1286I GDGCHC 1 cut(s) 608
Bsp143I GATC 7 cut(s) 175, 341, 358, 564, 714, 968, 1001
BspANI GGCC 7 cut(s) 5, 38, 135, 172, 216, 439, 450
BspCNI CTCAG 4 cut(s) 376, 714, 900, 976
BspFNI CGCG 2 cut(s) 132, 258
BspLI GGNNCC 7 cut(s) 148, 211, 226, 254, 528, 738, 830
BspMAI CTGCAG 1 cut(s) 1012
BspPI GGATC 3 cut(s) 353, 976, 1009
BspT104I TTCGAA 2 cut(s) 597, 704
BspT107I GGYRCC 4 cut(s) 209, 224, 526, 828
BspTNI GGTCTC 1 cut(s) 743
BsrDI GCAATG 1 cut(s) 202
BsrFI RCCGGY 4 cut(s) 212, 227, 295, 689
BsrI ACTGG 2 cut(s) 81, 528
BssAI RCCGGY 4 cut(s) 212, 227, 295, 689
BssECI CCNNGG 4 cut(s) 217, 256, 418, 628
BssMI GATC 7 cut(s) 175, 341, 358, 564, 714, 968, 1001
BssNI GRCGYC 3 cut(s) 225, 290, 527
BstACI GRCGYC 3 cut(s) 225, 290, 527
BstAPI GCANNNNNTGC 1 cut(s) 659
BstBI TTCGAA 2 cut(s) 597, 704
BstC8I GCNNGC 7 cut(s) 214, 229, 574, 586, 687, 882, 954
BstDEI CTNAG 4 cut(s) 363, 722, 908, 984
BstDSI CCRYGG 1 cut(s) 256
BstF5I GGATG 3 cut(s) 75, 341, 942
BstFNI CGCG 2 cut(s) 132, 258
BstH2I RGCGCY 2 cut(s) 228, 530
BstHHI GCGC 3 cut(s) 227, 529, 700
BstKTI GATC 7 cut(s) 178, 344, 361, 567, 717, 971, 1004
BstMAI GTCTC 2 cut(s) 59, 743
BstMBI GATC 7 cut(s) 175, 341, 358, 564, 714, 968, 1001
BstMCI CGRYCG 1 cut(s) 217
BstNSI RCATGY 1 cut(s) 595
BstPAI GACNNNNGTC 2 cut(s) 482, 638
BstSCI CCNGG 5 cut(s) 216, 434, 601, 680, 738
BstSFI CTRYAG 1 cut(s) 1008
BstUI CGCG 2 cut(s) 132, 258
BstV2I GAAGAC 2 cut(s) 463, 885
BstX2I RGATCY 1 cut(s) 341
BstYI RGATCY 1 cut(s) 341
BstZI CGGCCG 1 cut(s) 214
BsuRI GGCC 7 cut(s) 5, 38, 135, 172, 216, 439, 450
BtgI CCRYGG 1 cut(s) 256
BtsCI GGATG 3 cut(s) 75, 341, 942
Cac8I GCNNGC 7 cut(s) 214, 229, 574, 586, 687, 882, 954
CaiI CAGNNNCTG 1 cut(s) 411
CfoI GCGC 3 cut(s) 227, 529, 700
Cfr10I RCCGGY 4 cut(s) 212, 227, 295, 689
Cfr13I GGNCC 4 cut(s) 146, 171, 438, 736
Cfr42I CCGCGG 1 cut(s) 259
CseI GACGC 1 cut(s) 403
Csp6I GTAC 2 cut(s) 693, 829
CspCI CAANNNNNGTGG 2 cut(s) 756, 791
CviAII CATG 4 cut(s) 427, 514, 592, 805
CviQI GTAC 2 cut(s) 693, 829
DdeI CTNAG 4 cut(s) 363, 722, 908, 984
DinI GGCGCC 2 cut(s) 226, 528
DpnI GATC 7 cut(s) 177, 343, 360, 566, 716, 970, 1003
DpnII GATC 7 cut(s) 175, 341, 358, 564, 714, 968, 1001
EaeI YGGCCR 3 cut(s) 3, 36, 214
EagI CGGCCG 1 cut(s) 214
EciI GGCGGA 3 cut(s) 246, 529, 535
EclXI CGGCCG 1 cut(s) 214
Eco24I GRGCYC 1 cut(s) 608
Eco31I GGTCTC 1 cut(s) 743
Eco47I GGWCC 2 cut(s) 146, 736
Eco52I CGGCCG 1 cut(s) 214
Eco88I CYCGRG 1 cut(s) 629
EcoT38I GRGCYC 1 cut(s) 608
EgeI GGCGCC 2 cut(s) 226, 528
EheI GGCGCC 2 cut(s) 226, 528
FaeI CATG 4 cut(s) 430, 517, 595, 808
FaiI YATR 6 cut(s) 323, 428, 515, 593, 806, 855
FaqI GGGAC 1 cut(s) 646
FatI CATG 4 cut(s) 426, 513, 591, 804
FbaI TGATCA 1 cut(s) 714
FblI GTMKAC 2 cut(s) 642, 1058
FokI GGATG 3 cut(s) 62, 348, 949
FriOI GRGCYC 1 cut(s) 608
FspBI CTAG 1 cut(s) 345
GlaI GCGC 3 cut(s) 226, 528, 699
GsaI CCCAGC 1 cut(s) 19
HaeII RGCGCY 2 cut(s) 228, 530
HaeIII GGCC 7 cut(s) 5, 38, 135, 172, 216, 439, 450
HgaI GACGC 1 cut(s) 403
HhaI GCGC 3 cut(s) 227, 529, 700
Hin1I GRCGYC 3 cut(s) 225, 290, 527
Hin1II CATG 4 cut(s) 430, 517, 595, 808
Hin6I GCGC 3 cut(s) 225, 527, 698
HinP1I GCGC 3 cut(s) 225, 527, 698
HincII GTYRAC 2 cut(s) 963, 1059
HindII GTYRAC 2 cut(s) 963, 1059
HinfI GANTC 7 cut(s) 92, 275, 348, 402, 478, 622, 672
HphI GGTGA 1 cut(s) 799
Hpy166II GTNNAC 3 cut(s) 643, 963, 1059
Hpy188I TCNGA 5 cut(s) 146, 330, 401, 501, 909
Hpy188III TCNNGA 3 cut(s) 345, 475, 631
Hpy8I GTNNAC 3 cut(s) 643, 963, 1059
Hpy99I CGWCG 5 cut(s) 292, 295, 401, 488, 491
HpyAV CCTTC 4 cut(s) 162, 570, 859, 1009
HpyCH4IV ACGT 2 cut(s) 290, 635
HpyCH4V TGCA 2 cut(s) 495, 1010
HpyF3I CTNAG 4 cut(s) 363, 722, 908, 984
HpySE526I ACGT 2 cut(s) 290, 635
Hsp92I GRCGYC 3 cut(s) 225, 290, 527
Hsp92II CATG 4 cut(s) 430, 517, 595, 808
HspAI GCGC 3 cut(s) 225, 527, 698
KasI GGCGCC 2 cut(s) 224, 526
KpnI GGTACC 1 cut(s) 832
KroI GCCGGC 2 cut(s) 212, 227
KroNI GCCGGC 2 cut(s) 214, 229
Ksp22I TGATCA 1 cut(s) 714
KspI CCGCGG 1 cut(s) 259
Kzo9I GATC 7 cut(s) 175, 341, 358, 564, 714, 968, 1001
LmnI GCTCC 4 cut(s) 24, 252, 413, 650
LweI GCATC 1 cut(s) 84
MaeI CTAG 1 cut(s) 345
MaeII ACGT 2 cut(s) 290, 635
MaeIII GTNAC 2 cut(s) 83, 787
MalI GATC 7 cut(s) 177, 343, 360, 566, 716, 970, 1003
MboI GATC 7 cut(s) 175, 341, 358, 564, 714, 968, 1001
MboII GAAGA 6 cut(s) 87, 463, 559, 739, 742, 885
MflI RGATCY 1 cut(s) 341
MhlI GDGCHC 1 cut(s) 608
MlsI TGGCCA 1 cut(s) 38
MluCI AATT 5 cut(s) 99, 442, 798, 820, 1022
MluNI TGGCCA 1 cut(s) 38
Mly113I GGCGCC 2 cut(s) 225, 527
MlyI GAGTC 4 cut(s) 284, 357, 411, 472
MmeI TCCRAC 2 cut(s) 379, 649
Mox20I TGGCCA 1 cut(s) 38
MreI CGCCGGCG 1 cut(s) 227
MroNI GCCGGC 2 cut(s) 212, 227
MscI TGGCCA 1 cut(s) 38
MseI TTAA 1 cut(s) 888
MslI CAYNNNNRTG 3 cut(s) 512, 807, 809
Msp20I TGGCCA 1 cut(s) 38
MspA1I CMGCKG 5 cut(s) 24, 207, 258, 576, 880
MspR9I CCNGG 5 cut(s) 218, 436, 603, 682, 740
Mva1269I GAATGC 2 cut(s) 495, 787
MvnI CGCG 2 cut(s) 132, 258
NaeI GCCGGC 2 cut(s) 214, 229
NarI GGCGCC 2 cut(s) 225, 527
NciI CCSGG 5 cut(s) 218, 436, 603, 682, 740
NdeII GATC 7 cut(s) 175, 341, 358, 564, 714, 968, 1001
NgoMIV GCCGGC 2 cut(s) 212, 227
NlaIII CATG 4 cut(s) 430, 517, 595, 808
NlaIV GGNNCC 7 cut(s) 148, 211, 226, 254, 528, 738, 830
NmeAIII GCCGAG 2 cut(s) 399, 555
NmuCI GTSAC 1 cut(s) 787
NspI RCATGY 1 cut(s) 595
NspV TTCGAA 2 cut(s) 597, 704
OliI CACNNNNGTG 1 cut(s) 807
PciI ACATGT 1 cut(s) 591
PcsI WCGNNNNNNNCGW 3 cut(s) 171, 284, 453
PctI GAATGC 2 cut(s) 495, 787
PdiI GCCGGC 2 cut(s) 214, 229
PfeI GAWTC 3 cut(s) 92, 622, 672
PleI GAGTC 4 cut(s) 283, 356, 410, 472
PluTI GGCGCC 2 cut(s) 228, 530
PpsI GAGTC 4 cut(s) 283, 356, 410, 472
PscI ACATGT 1 cut(s) 591
PshAI GACNNNNGTC 2 cut(s) 482, 638
PspFI CCCAGC 1 cut(s) 15
PspN4I GGNNCC 7 cut(s) 148, 211, 226, 254, 528, 738, 830
PspPI GGNCC 4 cut(s) 146, 171, 438, 736
PstI CTGCAG 1 cut(s) 1012
PstNI CAGNNNCTG 1 cut(s) 411
PsuI RGATCY 1 cut(s) 341
PvuII CAGCTG 1 cut(s) 576
RsaI GTAC 2 cut(s) 694, 830
RsaNI GTAC 2 cut(s) 693, 829
RseI CAYNNNNRTG 3 cut(s) 512, 807, 809
SacII CCGCGG 1 cut(s) 259
SalI GTCGAC 1 cut(s) 1057
SaqAI TTAA 1 cut(s) 888
Sau3AI GATC 7 cut(s) 175, 341, 358, 564, 714, 968, 1001
Sau96I GGNCC 4 cut(s) 146, 171, 438, 736
SchI GAGTC 4 cut(s) 284, 357, 411, 472
ScrFI CCNGG 5 cut(s) 218, 436, 603, 682, 740
SduI GDGCHC 1 cut(s) 608
SfaNI GCATC 1 cut(s) 84
SfcI CTRYAG 1 cut(s) 1008
SfoI GGCGCC 2 cut(s) 226, 528
Sfr303I CCGCGG 1 cut(s) 259
SfuI TTCGAA 2 cut(s) 597, 704
SgrAI CRCCGGYG 1 cut(s) 227
SgrBI CCGCGG 1 cut(s) 259
SinI GGWCC 2 cut(s) 146, 736
SmiMI CAYNNNNRTG 3 cut(s) 512, 807, 809
Sse9I AATT 5 cut(s) 99, 442, 798, 820, 1022
SspDI GGCGCC 2 cut(s) 224, 526
SspMI CTAG 1 cut(s) 345
StyD4I CCNGG 5 cut(s) 216, 434, 601, 680, 738
TaiI ACGT 2 cut(s) 293, 638
TaqI TCGA 7 cut(s) 278, 287, 476, 563, 597, 704, 1058
TasI AATT 5 cut(s) 99, 442, 798, 820, 1022
TfiI GAWTC 3 cut(s) 92, 622, 672
Tru1I TTAA 1 cut(s) 888
Tru9I TTAA 1 cut(s) 888
TseFI GTSAC 1 cut(s) 787
Tsp45I GTSAC 1 cut(s) 787
TspGWI ACGGA 2 cut(s) 180, 360
VpaK11BI GGWCC 2 cut(s) 146, 736
XbaI TCTAGA 1 cut(s) 344
XceI RCATGY 1 cut(s) 595
XcmI CCANNNNNNNNNTGG 2 cut(s) 157, 839
XmiI GTMKAC 2 cut(s) 642, 1058
XspI CTAG 1 cut(s) 345
ZraI GACGTC 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.