Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0013257

Physical Location & Seq

Genomic Coordinates Reverse (-)

27173038 .. 27174218

Gene Structure 1181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G297600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGTCGGCCACTGCCCAGCTTCGTTACTCTACTGTTGCTCGACACCACTCTAATCCCTCCGATAATCGCCGTTTCTCCAACAACCCTAATTCCTCCATCTCCTTTCCCTACTCTAAAACCCTAAATCGGGCAATCTCGTTTGTCCCCAAGCCCATTTGGGATGGAAAGCCAGAGCTTTCGTTTTCCGGCGGAAATGGCGACGGCCACTCCGGCGCCGGAGCTGGTGGAAACAGCGGAGGCTGGAGCCGCGGCGGCGGAGATGGGAATTCCGATGATTCGTCGCCTTCATCTTCGTCGGCGTTTCAGGGTTTTGGAGTTCTGGGTATGTTTCTCAACGGTTGGAGATCTCGAGTTGCAGCCGATCCCCAATTCCCTTTCAAGGTTCTGATGGAGGAAGTGGTCGGCGTGAGCTCTTGCGTTCTCGGAGACATGGCTTCTCGCCCCAATTTCGGCCTCAACGAGCTCGACTTCGTCTTCTCGACTCTCGTTGTCGGCTCCATACTCAATTTCACACTGATGTATTTGTTAGCACCCACTTTGTCTGCTTCAGCTGCCACCCTGCCTTCGATCTTCGCCAGTTGCCCTGCTAGCCACATGTTCGAACCGGGTTCATATGGGTTGGTGAACCGTTTGGGGACATTCGTTTACAAGGGAGCCGTCTTTGCAGCTGTTGGGTTCGCTGCTGGGCTAGCTGGGACTGCCTTGTCAAATGGGTTGATCAAACTGAGGAAGAAGATGGACCCGAATTTCGAGACACCAAACAAGCCTCCACCAACTTTATTGAATGCGCTCACTTGGGCAGCTCACATGGGTATAAGCAGTAATTTAAGGTACCAAACTTTGAATGGGGCTGAGTTTTTGCTGGAAAAGGGGCTTCCCCCTCTGGCATTCAAGACTTCTGTGGTGGTTCTGAGGTGCTTGAACAATGTGCTTGGTGGGGTTTCGTTTGTGGTGTTGGCGAGGTTGACGGGTTCTCAGAGTGTCGGTGAAGCGAAATCGGTGGACGGAGGAGGGGAGGTTGGATCAGCTGCAGAGAAGGAGAAATTGGTGGAGGAGAGTGAGGATTTGCAGAGCAATCAGTCGACTTACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009648 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0010154 GO:0022414 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0061458 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RETICULATA-like

Protein Analysis

365

Amino Acids

38.24

Weight (kDa)

8.36

Isoelectric Point (pI)

37.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08630 AT3G08640
fragaria_vesca	FvH4_6g09440
malus_domestica	MD04G1177700.v1.1 MD12G1193000.v1.1
prunus_persica	Prupe.6G297600_v2.0.a1
pyrus_communis	pycom04g15670
rosa_chinensis	RchiOBHm_Chr3g0459911
rosa_laevigata	RLG00000025052
rosa_multiflora	Rmu_co8396657.1_g000001 Rmu_sc0000240.1_g000046 Rmu_sc0016534.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419920
rosa_rugosa	Rorug03G0038700.1
rosa_samantha	Rh3AG097500 Rh3BG100200 Rh3CG102000 Rh3DG101700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	703
Acc65I	GGTACC	1 cut(s)	831
AccB1I	GGYRCC	2 cut(s)	212, 831
AccI	GTMKAC	1 cut(s)	1082
AccII	CGCG	1 cut(s)	249
AciI	CCGC	6 cut(s)	189, 234, 247, 249, 252, 255
AclWI	GGATC	2 cut(s)	356, 1030
AcoI	YGGCCR	2 cut(s)	6, 202
AcsI	RAATTY	2 cut(s)	265, 745
AcuI	CTGAAG	1 cut(s)	531
AcyI	GRCGYC	1 cut(s)	213
AfaI	GTAC	1 cut(s)	833
AfiI	CCNNNNNNNGG	4 cut(s)	126, 127, 379, 449
AflIII	ACRYGT	1 cut(s)	594
AgsI	TTSAA	5 cut(s)	379, 784, 844, 892, 922
AjuI	GAANNNNNNNTTGG	2 cut(s)	1028, 1060
Alw21I	GWGCWC	2 cut(s)	413, 465
Alw26I	GTCTC	2 cut(s)	420, 746
AlwI	GGATC	2 cut(s)	356, 1030
Ama87I	CYCGRG	1 cut(s)	348
AoxI	GGCC	3 cut(s)	6, 202, 451
ApeKI	GCWGC	6 cut(s)	356, 551, 665, 680, 800, 1028
ApoI	RAATTY	2 cut(s)	265, 745
ArsI	GACNNNNNNTTYG	2 cut(s)	731, 763
Asp718I	GGTACC	1 cut(s)	831
AspLEI	GCGC	2 cut(s)	215, 790
AspS9I	GGNCC	1 cut(s)	739
AsuC2I	CCSGG	1 cut(s)	606
AsuHPI	GGTGA	2 cut(s)	634, 998
AsuII	TTCGAA	1 cut(s)	600
AsuNHI	GCTAGC	2 cut(s)	587, 688
AvaI	CYCGRG	1 cut(s)	348
AvaII	GGWCC	1 cut(s)	739
BanI	GGYRCC	2 cut(s)	212, 831
BanII	GRGCYC	2 cut(s)	413, 465
BbsI	GAAGAC	1 cut(s)	466
Bbv12I	GWGCWC	2 cut(s)	413, 465
BbvI	GCAGC	6 cut(s)	368, 538, 667, 677, 812, 1015
BccI	CCATC	5 cut(s)	104, 155, 254, 382, 730
BceAI	ACGGC	3 cut(s)	54, 217, 641
BclI	TGATCA	1 cut(s)	717
BcnI	CCSGG	1 cut(s)	606
BcoDI	GTCTC	2 cut(s)	420, 746
BfaI	CTAG	2 cut(s)	588, 689
BfmI	CTRYAG	1 cut(s)	1029
BfoI	RGCGCY	1 cut(s)	216
BglI	GCCNNNNNGGC	2 cut(s)	210, 252
BglII	AGATCT	1 cut(s)	344
BisI	GCNGC	9 cut(s)	247, 250, 253, 357, 552, 666, 681, 801, 1029
BlsI	GCNGC	9 cut(s)	248, 251, 254, 358, 553, 667, 682, 802, 1030
Bme1390I	CCNGG	1 cut(s)	606
Bme18I	GGWCC	1 cut(s)	739
BmeT110I	CYCGRG	1 cut(s)	348
BmgT120I	GGNCC	1 cut(s)	739
BmiI	GGNNCC	6 cut(s)	214, 245, 496, 655, 741, 833
BmrFI	CCNGG	1 cut(s)	606
BmtI	GCTAGC	2 cut(s)	591, 692
BpiI	GAAGAC	1 cut(s)	466
BpmI	CTGGAG	1 cut(s)	262
Bpu14I	TTCGAA	1 cut(s)	600
BpuMI	CCSGG	1 cut(s)	606
BsaHI	GRCGYC	1 cut(s)	213
BsaJI	CCNNGG	1 cut(s)	247
BsaXI	ACNNNNNCTCC	4 cut(s)	191, 221, 1002, 1032
Bsc4I	CCNNNNNNNGG	4 cut(s)	126, 127, 379, 449
Bse1I	ACTGG	1 cut(s)	576
BseDI	CCNNGG	1 cut(s)	247
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	4 cut(s)	126, 127, 379, 449
BseMII	CTCAG	4 cut(s)	716, 843, 902, 989
BseNI	ACTGG	1 cut(s)	576
BseRI	GAGGAG	2 cut(s)	1023, 1067
BseXI	GCAGC	6 cut(s)	368, 538, 667, 677, 812, 1015
BseYI	CCCAGC	3 cut(s)	15, 683, 692
Bsh1236I	CGCG	1 cut(s)	249
BshFI	GGCC	3 cut(s)	8, 204, 453
BshNI	GGYRCC	2 cut(s)	212, 831
BsiHKAI	GWGCWC	2 cut(s)	413, 465
BsiHKCI	CYCGRG	1 cut(s)	348
BsiSI	CCGG	4 cut(s)	186, 210, 216, 605
BslFI	GGGAC	3 cut(s)	128, 649, 709
BslI	CCNNNNNNNGG	4 cut(s)	126, 127, 379, 449
BsmAI	GTCTC	2 cut(s)	420, 746
BsmFI	GGGAC	3 cut(s)	128, 649, 709
BsmI	GAATGC	2 cut(s)	790, 887
BsnI	GGCC	3 cut(s)	8, 204, 453
BsoBI	CYCGRG	1 cut(s)	348
Bsp119I	TTCGAA	1 cut(s)	600
Bsp1286I	GDGCHC	2 cut(s)	413, 465
Bsp143I	GATC	5 cut(s)	344, 361, 567, 717, 1022
BspACI	CCGC	6 cut(s)	189, 234, 247, 249, 252, 255
BspANI	GGCC	3 cut(s)	8, 204, 453
BspCNI	CTCAG	4 cut(s)	717, 844, 903, 988
BspFNI	CGCG	1 cut(s)	249
BspLI	GGNNCC	6 cut(s)	214, 245, 496, 655, 741, 833
BspMAI	CTGCAG	1 cut(s)	1033
BspOI	GCTAGC	2 cut(s)	591, 692
BspPI	GGATC	2 cut(s)	356, 1030
BspT104I	TTCGAA	1 cut(s)	600
BspT107I	GGYRCC	2 cut(s)	212, 831
BsrI	ACTGG	1 cut(s)	576
BssECI	CCNNGG	1 cut(s)	247
BssMI	GATC	5 cut(s)	344, 361, 567, 717, 1022
BssNI	GRCGYC	1 cut(s)	213
Bst4CI	ACNGT	3 cut(s)	34, 338, 629
BstACI	GRCGYC	1 cut(s)	213
BstBI	TTCGAA	1 cut(s)	600
BstC8I	GCNNGC	2 cut(s)	589, 690
BstDEI	CTNAG	4 cut(s)	725, 852, 911, 975
BstDSI	CCRYGG	1 cut(s)	247
BstF5I	GGATG	1 cut(s)	166
BstFNI	CGCG	1 cut(s)	249
BstH2I	RGCGCY	1 cut(s)	216
BstHHI	GCGC	2 cut(s)	215, 790
BstKTI	GATC	5 cut(s)	347, 364, 570, 720, 1025
BstMAI	GTCTC	2 cut(s)	420, 746
BstMBI	GATC	5 cut(s)	344, 361, 567, 717, 1022
BstMWI	GCNNNNNNNGC	9 cut(s)	195, 210, 246, 252, 551, 588, 662, 689, 698
BstNSI	RCATGY	1 cut(s)	598
BstSCI	CCNGG	1 cut(s)	604
BstSFI	CTRYAG	1 cut(s)	1029
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	6 cut(s)	368, 538, 667, 677, 812, 1015
BstV2I	GAAGAC	1 cut(s)	466
BstX2I	RGATCY	1 cut(s)	344
BstYI	RGATCY	1 cut(s)	344
BsuRI	GGCC	3 cut(s)	8, 204, 453
BtgI	CCRYGG	1 cut(s)	247
BtsCI	GGATG	1 cut(s)	166
BtsI	GCAGTG	1 cut(s)	9
BtsIMutI	CAGTG	2 cut(s)	9, 512
Cac8I	GCNNGC	2 cut(s)	589, 690
CfoI	GCGC	2 cut(s)	215, 790
Cfr13I	GGNCC	1 cut(s)	739
Cfr42I	CCGCGG	1 cut(s)	250
Csp6I	GTAC	1 cut(s)	832
CviAII	CATG	3 cut(s)	430, 595, 808
CviQI	GTAC	1 cut(s)	832
DdeI	CTNAG	4 cut(s)	725, 852, 911, 975
DinI	GGCGCC	1 cut(s)	214
DpnI	GATC	5 cut(s)	346, 363, 569, 719, 1024
DpnII	GATC	5 cut(s)	344, 361, 567, 717, 1022
DrdI	GACNNNNNNGTC	1 cut(s)	703
DseDI	GACNNNNNNGTC	1 cut(s)	703
EaeI	YGGCCR	2 cut(s)	6, 202
EciI	GGCGGA	2 cut(s)	204, 270
Ecl136II	GAGCTC	2 cut(s)	411, 463
Eco24I	GRGCYC	2 cut(s)	413, 465
Eco47I	GGWCC	1 cut(s)	739
Eco53kI	GAGCTC	2 cut(s)	411, 463
Eco57I	CTGAAG	1 cut(s)	531
Eco88I	CYCGRG	1 cut(s)	348
EcoICRI	GAGCTC	2 cut(s)	411, 463
EcoRI	GAATTC	1 cut(s)	265
EcoT38I	GRGCYC	2 cut(s)	413, 465
EgeI	GGCGCC	1 cut(s)	214
EheI	GGCGCC	1 cut(s)	214
FaeI	CATG	3 cut(s)	433, 598, 811
FaiI	YATR	8 cut(s)	326, 431, 500, 596, 613, 615, 809, 815
FaqI	GGGAC	3 cut(s)	128, 649, 709
FatI	CATG	3 cut(s)	429, 594, 807
FauNDI	CATATG	1 cut(s)	613
FbaI	TGATCA	1 cut(s)	717
FblI	GTMKAC	1 cut(s)	1082
Fnu4HI	GCNGC	9 cut(s)	247, 250, 253, 357, 552, 666, 681, 801, 1029
FokI	GGATG	1 cut(s)	173
FriOI	GRGCYC	2 cut(s)	413, 465
Fsp4HI	GCNGC	9 cut(s)	247, 250, 253, 357, 552, 666, 681, 801, 1029
FspBI	CTAG	2 cut(s)	588, 689
GlaI	GCGC	2 cut(s)	214, 789
GluI	GCNGC	9 cut(s)	247, 250, 253, 357, 552, 666, 681, 801, 1029
GsaI	CCCAGC	3 cut(s)	19, 687, 696
GsuI	CTGGAG	1 cut(s)	262
HaeII	RGCGCY	1 cut(s)	216
HaeIII	GGCC	3 cut(s)	8, 204, 453
HapII	CCGG	4 cut(s)	186, 210, 216, 605
HhaI	GCGC	2 cut(s)	215, 790
Hin1I	GRCGYC	1 cut(s)	213
Hin1II	CATG	3 cut(s)	433, 598, 811
Hin6I	GCGC	2 cut(s)	213, 788
HinP1I	GCGC	2 cut(s)	213, 788
HincII	GTYRAC	2 cut(s)	966, 1083
HindII	GTYRAC	2 cut(s)	966, 1083
HinfI	GANTC	2 cut(s)	275, 481
HpaII	CCGG	4 cut(s)	186, 210, 216, 605
HphI	GGTGA	2 cut(s)	634, 998
Hpy166II	GTNNAC	5 cut(s)	625, 646, 966, 1003, 1083
Hpy188I	TCNGA	6 cut(s)	61, 271, 387, 425, 912, 978
Hpy188III	TCNNGA	4 cut(s)	348, 478, 751, 892
Hpy8I	GTNNAC	5 cut(s)	625, 646, 966, 1003, 1083
Hpy99I	CGWCG	3 cut(s)	203, 283, 298
HpyAV	CCTTC	3 cut(s)	294, 573, 1030
HpyCH4III	ACNGT	3 cut(s)	34, 338, 629
HpyCH4V	TGCA	4 cut(s)	356, 665, 1031, 1069
HpyF10VI	GCNNNNNNNGC	9 cut(s)	195, 210, 246, 252, 551, 588, 662, 689, 698
HpyF3I	CTNAG	4 cut(s)	725, 852, 911, 975
Hsp92I	GRCGYC	1 cut(s)	213
Hsp92II	CATG	3 cut(s)	433, 598, 811
HspAI	GCGC	2 cut(s)	213, 788
KasI	GGCGCC	1 cut(s)	212
KpnI	GGTACC	1 cut(s)	835
Ksp22I	TGATCA	1 cut(s)	717
KspI	CCGCGG	1 cut(s)	250
Kzo9I	GATC	5 cut(s)	344, 361, 567, 717, 1022
LmnI	GCTCC	4 cut(s)	218, 243, 500, 653
Lsp1109I	GCAGC	6 cut(s)	368, 538, 667, 677, 812, 1015
MaeI	CTAG	2 cut(s)	588, 689
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	5 cut(s)	346, 363, 569, 719, 1024
MboI	GATC	5 cut(s)	344, 361, 567, 717, 1022
MboII	GAAGA	5 cut(s)	282, 466, 562, 742, 745
MflI	RGATCY	1 cut(s)	344
MhlI	GDGCHC	2 cut(s)	413, 465
MluCI	AATT	8 cut(s)	88, 265, 368, 445, 505, 745, 823, 1043
Mly113I	GGCGCC	1 cut(s)	213
MlyI	GAGTC	1 cut(s)	475
MmeI	TCCRAC	3 cut(s)	102, 320, 1000
MseI	TTAA	1 cut(s)	827
MslI	CAYNNNNRTG	1 cut(s)	515
MspA1I	CMGCKG	5 cut(s)	234, 249, 551, 668, 1028
MspI	CCGG	4 cut(s)	186, 210, 216, 605
MspR9I	CCNGG	1 cut(s)	606
Mva1269I	GAATGC	2 cut(s)	790, 887
MvnI	CGCG	1 cut(s)	249
MwoI	GCNNNNNNNGC	9 cut(s)	195, 210, 246, 252, 551, 588, 662, 689, 698
NarI	GGCGCC	1 cut(s)	213
NciI	CCSGG	1 cut(s)	606
NdeI	CATATG	1 cut(s)	613
NdeII	GATC	5 cut(s)	344, 361, 567, 717, 1022
NheI	GCTAGC	2 cut(s)	587, 688
NlaIII	CATG	3 cut(s)	433, 598, 811
NlaIV	GGNNCC	6 cut(s)	214, 245, 496, 655, 741, 833
NspI	RCATGY	1 cut(s)	598
NspV	TTCGAA	1 cut(s)	600
PaeR7I	CTCGAG	1 cut(s)	348
PciI	ACATGT	1 cut(s)	594
PcsI	WCGNNNNNNNCGW	1 cut(s)	456
PctI	GAATGC	2 cut(s)	790, 887
PfeI	GAWTC	1 cut(s)	275
PflFI	GACNNNGTC	1 cut(s)	470
PkrI	GCNGC	9 cut(s)	248, 251, 254, 358, 553, 667, 682, 802, 1030
PleI	GAGTC	1 cut(s)	475
PluTI	GGCGCC	1 cut(s)	216
PpsI	GAGTC	1 cut(s)	475
PscI	ACATGT	1 cut(s)	594
Psp124BI	GAGCTC	2 cut(s)	413, 465
PspFI	CCCAGC	3 cut(s)	15, 683, 692
PspN4I	GGNNCC	6 cut(s)	214, 245, 496, 655, 741, 833
PspPI	GGNCC	1 cut(s)	739
PstI	CTGCAG	1 cut(s)	1033
PsuI	RGATCY	1 cut(s)	344
PsyI	GACNNNGTC	1 cut(s)	470
PvuII	CAGCTG	3 cut(s)	551, 668, 1028
RsaI	GTAC	1 cut(s)	833
RsaNI	GTAC	1 cut(s)	832
RseI	CAYNNNNRTG	1 cut(s)	515
SacI	GAGCTC	2 cut(s)	413, 465
SacII	CCGCGG	1 cut(s)	250
SalI	GTCGAC	1 cut(s)	1081
SaqAI	TTAA	1 cut(s)	827
SatI	GCNGC	9 cut(s)	247, 250, 253, 357, 552, 666, 681, 801, 1029
Sau3AI	GATC	5 cut(s)	344, 361, 567, 717, 1022
Sau96I	GGNCC	1 cut(s)	739
SchI	GAGTC	1 cut(s)	475
ScrFI	CCNGG	1 cut(s)	606
SduI	GDGCHC	2 cut(s)	413, 465
SfcI	CTRYAG	1 cut(s)	1029
SfoI	GGCGCC	1 cut(s)	214
Sfr274I	CTCGAG	1 cut(s)	348
Sfr303I	CCGCGG	1 cut(s)	250
SfuI	TTCGAA	1 cut(s)	600
SgrBI	CCGCGG	1 cut(s)	250
SinI	GGWCC	1 cut(s)	739
SlaI	CTCGAG	1 cut(s)	348
SmiMI	CAYNNNNRTG	1 cut(s)	515
SmlI	CTYRAG	1 cut(s)	348
SmoI	CTYRAG	1 cut(s)	348
Sse9I	AATT	8 cut(s)	88, 265, 368, 445, 505, 745, 823, 1043
SsiI	CCGC	6 cut(s)	189, 234, 247, 249, 252, 255
SspDI	GGCGCC	1 cut(s)	212
SspMI	CTAG	2 cut(s)	588, 689
SstI	GAGCTC	2 cut(s)	413, 465
StyD4I	CCNGG	1 cut(s)	604
TaaI	ACNGT	3 cut(s)	34, 338, 629
TaqI	TCGA	8 cut(s)	40, 349, 465, 479, 566, 600, 750, 1082
TasI	AATT	8 cut(s)	88, 265, 368, 445, 505, 745, 823, 1043
TauI	GCSGC	3 cut(s)	249, 252, 255
TfiI	GAWTC	1 cut(s)	275
Tru1I	TTAA	1 cut(s)	827
Tru9I	TTAA	1 cut(s)	827
TscAI	CASTG	2 cut(s)	16, 519
TseI	GCWGC	6 cut(s)	356, 551, 665, 680, 800, 1028
TspDTI	ATGAA	2 cut(s)	276, 600
TspGWI	ACGGA	1 cut(s)	1020
TspRI	CASTG	2 cut(s)	16, 519
Tth111I	GACNNNGTC	1 cut(s)	470
VpaK11BI	GGWCC	1 cut(s)	739
XapI	RAATTY	2 cut(s)	265, 745
XceI	RCATGY	1 cut(s)	598
XcmI	CCANNNNNNNNNTGG	1 cut(s)	842
XhoI	CTCGAG	1 cut(s)	348
XmiI	GTMKAC	1 cut(s)	1082
XspI	CTAG	2 cut(s)	588, 689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.