Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0013257

Physical Location & Seq

Genomic Coordinates Reverse (-)

18484491 .. 18485567

Gene Structure 1077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g15670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGCCGCCGCCGCTCAGCTGCGCTGCTCTACAGTCGGCAGACACCACTACAACCCTTCCGACAACCGCAGATTCTCCGCCAACCCTAATTCTTCGATCTCCTTCCCCTACTCCAAGACCCAGAATCGCCCTCTCTCTTTCGTCCCAAAACCCATCTGGGTCCAAACGCCAGAGCATTCGTTTTCCGGCGGAAATGGCGGTGGCGGCGCGGGAGCGGGAGGAAATAGCGGCGGATGGAGCCGAGGCGGAGATGGGAATTCCGACGACTCGTCGTCTTCCTCGTCGTCGGTTTCGGGATTCGGAGTTCTGGGTATGTTTCTCAACGGGTGGAGATCCCGTGTCGCCGCCGATCCGCAGTTCCCCTTCAAGGTTCTGATGGCGGAGGTGGTCGGCGTCAGCTCCTGCGTCCTCGGCGACATGGCTTCCCGCCCCAATTTCGGCCTCAACGAGCTCGACTTCGTCTTCTCGACGCTTGTCGTCGGCTGCATCCTCAATTTTACGCTCATGTATTTGTTGGCCCCCACTCTGTCCGCCTCCGCCGCCACTCTTCCGTCGATCTTCGCCAGCTGCCCGGCCAGCCACATGTTCGAACCGGGTTCCTATGGCTTGATGAATCGATTGGGGACTTTCGTTTACAAGGGCACAGTCTTTGCTGCCGTTGGATTCGTGGCGGGGCTTGCTGGAACCGCATTGTCGAATGGGTTGATCAAATTGAGGAAGAAGATGGATCCGAATTTCGAGACCCCGAATAAGGCGCCGCCTACGCTGCTGAATGCGCTCACTTGGGCGGCTCACATGGGTTTGAGCAGCAATTTGAGGTACCAGACGCTGAACGGGGCGGAGTTTTTGCTTGAGAAGGGGCTTCCGCCACTGGCGTTCAAGTCGTCCGTGGTGGTTCTGAGGTGCCTGAACAATGTGCTGGGCGGGATGTCGTTTGTTGTGCTGGCGAGGTTGACGGGGTCACAGAGCGTTGCGGAGAAACCGGTTGAAGTGGAGGTGGGATCGGCGGAGGAGAAGGAGAAATTGGTGGTGGTCGAGAGTGAGGATGAGCAGAGCAATCAGTCGACTTTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009648 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0010154 GO:0022414 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0061458 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RETICULATA-like

Protein Analysis

359

Amino Acids

37.8

Weight (kDa)

8.56

Isoelectric Point (pI)

40.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RETICULATA-like	PF11891	113 - 279	1.4e-62	Protein RETICULATA-related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08630 AT3G08640
fragaria_vesca	FvH4_6g09440
malus_domestica	MD04G1177700.v1.1 MD12G1193000.v1.1
prunus_persica	Prupe.6G297600_v2.0.a1
pyrus_communis	pycom04g15670
rosa_chinensis	RchiOBHm_Chr3g0459911
rosa_laevigata	RLG00000025052
rosa_multiflora	Rmu_co8396657.1_g000001 Rmu_sc0000240.1_g000046 Rmu_sc0016534.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419920
rosa_rugosa	Rorug03G0038700.1
rosa_samantha	Rh3AG097500 Rh3BG100200 Rh3CG102000 Rh3DG101700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	819
AccB1I	GGYRCC	3 cut(s)	754, 819, 903
AccBSI	CCGCTC	2 cut(s)	14, 215
AccI	GTMKAC	1 cut(s)	1064
AccII	CGCG	1 cut(s)	209
AclWI	GGATC	5 cut(s)	327, 344, 722, 735, 1009
AcoI	YGGCCR	2 cut(s)	3, 573
AcsI	RAATTY	2 cut(s)	256, 733
AcyI	GRCGYC	2 cut(s)	393, 755
AfaI	GTAC	1 cut(s)	821
AfiI	CCNNNNNNNGG	3 cut(s)	367, 437, 751
AflIII	ACRYGT	1 cut(s)	582
AgeI	ACCGGT	1 cut(s)	982
AgsI	TTSAA	4 cut(s)	367, 880, 989, 1072
AhdI	GACNNNNNGTC	2 cut(s)	268, 271
AjuI	GAANNNNNNNTTGG	2 cut(s)	1007, 1039
AloI	GAACNNNNNNTCC	2 cut(s)	288, 320
AluBI	AGCT	4 cut(s)	19, 399, 451, 567
AluI	AGCT	4 cut(s)	19, 399, 451, 567
Alw21I	GWGCWC	1 cut(s)	453
Alw26I	GTCTC	1 cut(s)	734
AlwI	GGATC	5 cut(s)	327, 344, 722, 735, 1009
AlwNI	CAGNNNCTG	2 cut(s)	402, 829
AoxI	GGCC	4 cut(s)	3, 439, 516, 573
ApeKI	GCWGC	7 cut(s)	19, 24, 483, 567, 653, 766, 807
ApoI	RAATTY	2 cut(s)	256, 733
AsiGI	ACCGGT	1 cut(s)	982
Asp718I	GGTACC	1 cut(s)	819
AspLEI	GCGC	4 cut(s)	24, 209, 757, 778
AspS9I	GGNCC	2 cut(s)	160, 517
AsuC2I	CCSGG	2 cut(s)	572, 594
AsuII	TTCGAA	1 cut(s)	588
AvaII	GGWCC	1 cut(s)	160
BaeGI	GKGCMC	1 cut(s)	644
BamHI	GGATCC	1 cut(s)	727
BanI	GGYRCC	3 cut(s)	754, 819, 903
BanII	GRGCYC	1 cut(s)	453
BbsI	GAAGAC	2 cut(s)	267, 454
Bbv12I	GWGCWC	1 cut(s)	453
BbvI	GCAGC	7 cut(s)	6, 11, 470, 554, 640, 753, 819
BccI	CCATC	5 cut(s)	161, 228, 245, 370, 718
BceAI	ACGGC	1 cut(s)	641
BclI	TGATCA	1 cut(s)	705
BcnI	CCSGG	2 cut(s)	572, 594
BcoDI	GTCTC	1 cut(s)	734
BfmI	CTRYAG	1 cut(s)	30
BfoI	RGCGCY	1 cut(s)	758
BlpI	GCTNAGC	1 cut(s)	15
Bme1390I	CCNGG	2 cut(s)	572, 594
Bme18I	GGWCC	1 cut(s)	160
BmeRI	GACNNNNNGTC	2 cut(s)	268, 271
BmgT120I	GGNCC	2 cut(s)	160, 517
BmiI	GGNNCC	9 cut(s)	161, 239, 519, 598, 685, 729, 756, 821, 905
BmrFI	CCNGG	2 cut(s)	572, 594
BmsI	GCATC	1 cut(s)	495
BoxI	GACNNNNGTC	1 cut(s)	473
BpiI	GAAGAC	2 cut(s)	267, 454
Bpu1102I	GCTNAGC	1 cut(s)	15
Bpu14I	TTCGAA	1 cut(s)	588
BpuEI	CTTGAG	1 cut(s)	872
BpuMI	CCSGG	2 cut(s)	572, 594
Bsa29I	ATCGAT	1 cut(s)	616
BsaHI	GRCGYC	2 cut(s)	393, 755
BsaI	GGTCTC	1 cut(s)	734
BsaJI	CCNNGG	3 cut(s)	241, 409, 888
BsaWI	WCCGGW	1 cut(s)	982
BsaXI	ACNNNNNCTCC	2 cut(s)	322, 352
Bsc4I	CCNNNNNNNGG	3 cut(s)	367, 437, 751
Bse118I	RCCGGY	1 cut(s)	982
Bse1I	ACTGG	1 cut(s)	876
BseCI	ATCGAT	1 cut(s)	616
BseDI	CCNNGG	3 cut(s)	241, 409, 888
BseGI	GGATG	4 cut(s)	239, 486, 933, 1051
BseLI	CCNNNNNNNGG	3 cut(s)	367, 437, 751
BseMII	CTCAG	2 cut(s)	29, 890
BseNI	ACTGG	1 cut(s)	876
BseRI	GAGGAG	1 cut(s)	1025
BseSI	GKGCMC	1 cut(s)	644
BseXI	GCAGC	7 cut(s)	6, 11, 470, 554, 640, 753, 819
BseYI	CCCAGC	1 cut(s)	919
Bsh1236I	CGCG	1 cut(s)	209
BshFI	GGCC	4 cut(s)	5, 441, 518, 575
BshNI	GGYRCC	3 cut(s)	754, 819, 903
BshTI	ACCGGT	1 cut(s)	982
BshVI	ATCGAT	1 cut(s)	616
BsiHKAI	GWGCWC	1 cut(s)	453
BsiSI	CCGG	4 cut(s)	186, 572, 593, 983
BslFI	GGGAC	2 cut(s)	128, 637
BslI	CCNNNNNNNGG	3 cut(s)	367, 437, 751
BsmAI	GTCTC	1 cut(s)	734
BsmFI	GGGAC	2 cut(s)	128, 637
BsmI	GAATGC	2 cut(s)	175, 778
BsnI	GGCC	4 cut(s)	5, 441, 518, 575
Bso31I	GGTCTC	1 cut(s)	734
Bsp119I	TTCGAA	1 cut(s)	588
Bsp1286I	GDGCHC	2 cut(s)	453, 644
Bsp143I	GATC	7 cut(s)	96, 332, 349, 555, 705, 727, 1001
Bsp1720I	GCTNAGC	1 cut(s)	15
BspANI	GGCC	4 cut(s)	5, 441, 518, 575
BspCNI	CTCAG	2 cut(s)	28, 891
BspDI	ATCGAT	1 cut(s)	616
BspFNI	CGCG	1 cut(s)	209
BspLI	GGNNCC	9 cut(s)	161, 239, 519, 598, 685, 729, 756, 821, 905
BspPI	GGATC	5 cut(s)	327, 344, 722, 735, 1009
BspT104I	TTCGAA	1 cut(s)	588
BspT107I	GGYRCC	3 cut(s)	754, 819, 903
BspTNI	GGTCTC	1 cut(s)	734
BsrBI	CCGCTC	2 cut(s)	14, 215
BsrFI	RCCGGY	1 cut(s)	982
BsrI	ACTGG	1 cut(s)	876
BssAI	RCCGGY	1 cut(s)	982
BssECI	CCNNGG	3 cut(s)	241, 409, 888
BssMI	GATC	7 cut(s)	96, 332, 349, 555, 705, 727, 1001
BssNI	GRCGYC	2 cut(s)	393, 755
Bst4CI	ACNGT	2 cut(s)	34, 646
Bst6I	CTCTTC	1 cut(s)	552
BstACI	GRCGYC	2 cut(s)	393, 755
BstBI	TTCGAA	1 cut(s)	588
BstC8I	GCNNGC	4 cut(s)	565, 577, 678, 945
BstDEI	CTNAG	2 cut(s)	15, 899
BstDSI	CCRYGG	1 cut(s)	888
BstF5I	GGATG	4 cut(s)	239, 486, 933, 1051
BstFNI	CGCG	1 cut(s)	209
BstH2I	RGCGCY	1 cut(s)	758
BstHHI	GCGC	4 cut(s)	24, 209, 757, 778
BstKTI	GATC	7 cut(s)	99, 335, 352, 558, 708, 730, 1004
BstMAI	GTCTC	1 cut(s)	734
BstMBI	GATC	7 cut(s)	96, 332, 349, 555, 705, 727, 1001
BstNSI	RCATGY	1 cut(s)	586
BstPAI	GACNNNNGTC	1 cut(s)	473
BstSCI	CCNGG	2 cut(s)	570, 592
BstSFI	CTRYAG	1 cut(s)	30
BstSLI	GKGCMC	1 cut(s)	644
BstUI	CGCG	1 cut(s)	209
BstV1I	GCAGC	7 cut(s)	6, 11, 470, 554, 640, 753, 819
BstV2I	GAAGAC	2 cut(s)	267, 454
BstX2I	RGATCY	2 cut(s)	332, 727
BstYI	RGATCY	2 cut(s)	332, 727
Bsu15I	ATCGAT	1 cut(s)	616
BsuRI	GGCC	4 cut(s)	5, 441, 518, 575
BsuTUI	ATCGAT	1 cut(s)	616
BtgI	CCRYGG	1 cut(s)	888
BtsCI	GGATG	4 cut(s)	239, 486, 933, 1051
BtsIMutI	CAGTG	1 cut(s)	869
Cac8I	GCNNGC	4 cut(s)	565, 577, 678, 945
CaiI	CAGNNNCTG	2 cut(s)	402, 829
CfoI	GCGC	4 cut(s)	24, 209, 757, 778
Cfr10I	RCCGGY	1 cut(s)	982
Cfr13I	GGNCC	2 cut(s)	160, 517
ClaI	ATCGAT	1 cut(s)	616
CseI	GACGC	4 cut(s)	382, 394, 478, 835
Csp6I	GTAC	1 cut(s)	820
CspAI	ACCGGT	1 cut(s)	982
CviAII	CATG	4 cut(s)	418, 505, 583, 796
CviQI	GTAC	1 cut(s)	820
DdeI	CTNAG	2 cut(s)	15, 899
DinI	GGCGCC	1 cut(s)	756
DpnI	GATC	7 cut(s)	98, 334, 351, 557, 707, 729, 1003
DpnII	GATC	7 cut(s)	96, 332, 349, 555, 705, 727, 1001
DriI	GACNNNNNGTC	2 cut(s)	268, 271
EaeI	YGGCCR	2 cut(s)	3, 573
Eam1104I	CTCTTC	1 cut(s)	552
Eam1105I	GACNNNNNGTC	2 cut(s)	268, 271
EarI	CTCTTC	1 cut(s)	552
Ecl136II	GAGCTC	1 cut(s)	451
Eco24I	GRGCYC	1 cut(s)	453
Eco31I	GGTCTC	1 cut(s)	734
Eco47I	GGWCC	1 cut(s)	160
Eco53kI	GAGCTC	1 cut(s)	451
EcoICRI	GAGCTC	1 cut(s)	451
EcoRI	GAATTC	1 cut(s)	256
EcoT38I	GRGCYC	1 cut(s)	453
EgeI	GGCGCC	1 cut(s)	756
EheI	GGCGCC	1 cut(s)	756
FaeI	CATG	4 cut(s)	421, 508, 586, 799
FaiI	YATR	6 cut(s)	314, 419, 506, 584, 603, 797
FaqI	GGGAC	2 cut(s)	128, 637
FatI	CATG	4 cut(s)	417, 504, 582, 795
FauI	CCCGC	5 cut(s)	202, 208, 434, 664, 917
FbaI	TGATCA	1 cut(s)	705
FblI	GTMKAC	1 cut(s)	1064
FokI	GGATG	4 cut(s)	246, 473, 940, 1058
FriOI	GRGCYC	1 cut(s)	453
GlaI	GCGC	4 cut(s)	23, 208, 756, 777
GsaI	CCCAGC	1 cut(s)	923
HaeII	RGCGCY	1 cut(s)	758
HaeIII	GGCC	4 cut(s)	5, 441, 518, 575
HapII	CCGG	4 cut(s)	186, 572, 593, 983
HgaI	GACGC	4 cut(s)	382, 394, 478, 835
HhaI	GCGC	4 cut(s)	24, 209, 757, 778
Hin1I	GRCGYC	2 cut(s)	393, 755
Hin1II	CATG	4 cut(s)	421, 508, 586, 799
Hin6I	GCGC	4 cut(s)	22, 207, 755, 776
HinP1I	GCGC	4 cut(s)	22, 207, 755, 776
HincII	GTYRAC	2 cut(s)	954, 1065
HindII	GTYRAC	2 cut(s)	954, 1065
HinfI	GANTC	6 cut(s)	72, 124, 266, 297, 613, 663
HpaII	CCGG	4 cut(s)	186, 572, 593, 983
Hpy166II	GTNNAC	3 cut(s)	634, 954, 1065
Hpy188I	TCNGA	6 cut(s)	61, 262, 302, 375, 732, 900
Hpy188III	TCNNGA	4 cut(s)	294, 466, 739, 1036
Hpy8I	GTNNAC	3 cut(s)	634, 954, 1065
Hpy99I	CGWCG	7 cut(s)	266, 274, 286, 289, 472, 482, 556
HpyAV	CCTTC	5 cut(s)	66, 112, 373, 850, 1009
HpyCH4III	ACNGT	2 cut(s)	34, 646
HpyCH4V	TGCA	1 cut(s)	486
HpyF3I	CTNAG	2 cut(s)	15, 899
Hsp92I	GRCGYC	2 cut(s)	393, 755
Hsp92II	CATG	4 cut(s)	421, 508, 586, 799
HspAI	GCGC	4 cut(s)	22, 207, 755, 776
KasI	GGCGCC	1 cut(s)	754
KpnI	GGTACC	1 cut(s)	823
Ksp22I	TGATCA	1 cut(s)	705
Kzo9I	GATC	7 cut(s)	96, 332, 349, 555, 705, 727, 1001
LmnI	GCTCC	3 cut(s)	212, 237, 404
Lsp1109I	GCAGC	7 cut(s)	6, 11, 470, 554, 640, 753, 819
LweI	GCATC	1 cut(s)	495
MaeIII	GTNAC	1 cut(s)	960
MalI	GATC	7 cut(s)	98, 334, 351, 557, 707, 729, 1003
MbiI	CCGCTC	2 cut(s)	14, 215
MboI	GATC	7 cut(s)	96, 332, 349, 555, 705, 727, 1001
MboII	GAAGA	7 cut(s)	84, 267, 454, 539, 550, 730, 733
MflI	RGATCY	2 cut(s)	332, 727
MhlI	GDGCHC	2 cut(s)	453, 644
MluCI	AATT	8 cut(s)	88, 256, 433, 493, 710, 733, 811, 1022
Mly113I	GGCGCC	1 cut(s)	755
MlyI	GAGTC	1 cut(s)	260
MmeI	TCCRAC	3 cut(s)	84, 285, 640
MspA1I	CMGCKG	2 cut(s)	19, 567
MspI	CCGG	4 cut(s)	186, 572, 593, 983
MspR9I	CCNGG	2 cut(s)	572, 594
Mva1269I	GAATGC	2 cut(s)	175, 778
MvnI	CGCG	1 cut(s)	209
NarI	GGCGCC	1 cut(s)	755
NciI	CCSGG	2 cut(s)	572, 594
NdeII	GATC	7 cut(s)	96, 332, 349, 555, 705, 727, 1001
NlaIII	CATG	4 cut(s)	421, 508, 586, 799
NlaIV	GGNNCC	9 cut(s)	161, 239, 519, 598, 685, 729, 756, 821, 905
NmeAIII	GCCGAG	2 cut(s)	266, 390
NmuCI	GTSAC	1 cut(s)	960
NspI	RCATGY	1 cut(s)	586
NspV	TTCGAA	1 cut(s)	588
PciI	ACATGT	1 cut(s)	582
PcsI	WCGNNNNNNNCGW	2 cut(s)	278, 444
PctI	GAATGC	2 cut(s)	175, 778
PfeI	GAWTC	5 cut(s)	72, 124, 297, 613, 663
PflFI	GACNNNGTC	2 cut(s)	458, 958
PinAI	ACCGGT	1 cut(s)	982
PleI	GAGTC	1 cut(s)	260
PluTI	GGCGCC	1 cut(s)	758
PpsI	GAGTC	1 cut(s)	260
PscI	ACATGT	1 cut(s)	582
PshAI	GACNNNNGTC	1 cut(s)	473
Psp124BI	GAGCTC	1 cut(s)	453
PspFI	CCCAGC	1 cut(s)	919
PspN4I	GGNNCC	9 cut(s)	161, 239, 519, 598, 685, 729, 756, 821, 905
PspPI	GGNCC	2 cut(s)	160, 517
PstNI	CAGNNNCTG	2 cut(s)	402, 829
PsuI	RGATCY	2 cut(s)	332, 727
PsyI	GACNNNGTC	2 cut(s)	458, 958
PvuII	CAGCTG	2 cut(s)	19, 567
RsaI	GTAC	1 cut(s)	821
RsaNI	GTAC	1 cut(s)	820
SacI	GAGCTC	1 cut(s)	453
SalI	GTCGAC	1 cut(s)	1063
Sau3AI	GATC	7 cut(s)	96, 332, 349, 555, 705, 727, 1001
Sau96I	GGNCC	2 cut(s)	160, 517
SchI	GAGTC	1 cut(s)	260
ScrFI	CCNGG	2 cut(s)	572, 594
SduI	GDGCHC	2 cut(s)	453, 644
SfaNI	GCATC	1 cut(s)	495
SfcI	CTRYAG	1 cut(s)	30
SfoI	GGCGCC	1 cut(s)	756
SfuI	TTCGAA	1 cut(s)	588
SinI	GGWCC	1 cut(s)	160
SmlI	CTYRAG	1 cut(s)	851
SmoI	CTYRAG	1 cut(s)	851
Sse9I	AATT	8 cut(s)	88, 256, 433, 493, 710, 733, 811, 1022
SspDI	GGCGCC	1 cut(s)	754
SstI	GAGCTC	1 cut(s)	453
StyD4I	CCNGG	2 cut(s)	570, 592
TaaI	ACNGT	2 cut(s)	34, 646
TasI	AATT	8 cut(s)	88, 256, 433, 493, 710, 733, 811, 1022
TauI	GCSGC	9 cut(s)	8, 11, 14, 207, 231, 347, 542, 760, 791
TfiI	GAWTC	5 cut(s)	72, 124, 297, 613, 663
TscAI	CASTG	1 cut(s)	876
TseFI	GTSAC	1 cut(s)	960
TseI	GCWGC	7 cut(s)	19, 24, 483, 567, 653, 766, 807
Tsp45I	GTSAC	1 cut(s)	960
TspDTI	ATGAA	1 cut(s)	626
TspGWI	ACGGA	2 cut(s)	540, 877
TspRI	CASTG	1 cut(s)	876
Tth111I	GACNNNGTC	2 cut(s)	458, 958
VpaK11BI	GGWCC	1 cut(s)	160
XapI	RAATTY	2 cut(s)	256, 733
XceI	RCATGY	1 cut(s)	586
XcmI	CCANNNNNNNNNTGG	1 cut(s)	153
XmiI	GTMKAC	1 cut(s)	1064

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.