Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0013257

Physical Location & Seq

Genomic Coordinates Reverse (-)

27481048 .. 27482127

Gene Structure 1080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1193000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGCAGCCGCCGCTCAGCTTCGTTGCTCTACTGTAGCTAAACACTGCTCGACTACCTCCGATAACCGCCGTTTCTCCGCCAATCCTAATTCTTCAATCTCCTTCCCCTACTCCAAAACCCAGAATCGCCCTCTCTTTTTCGTCCCAAAGCCCATCTGGGTCCAAAAGCCAGAGCTTTCGTTTTCCGGCGGAAATGGCGGCGGCGGCGCAGGAGCGGGAGGAAACAGCGGGGGGTGGAGCCGGGGCGGAGATGGGAGTTCCGATGACTCGTCGTCTTCGTCGTCGTCGGTTTCGGGATTCGGAGTTCTGGTTATGTTTCTCAATGGATGGAGATCCCGAGTCGCCGCCGATCCGCAGTTCCCCTTCAAGGTTCTGATGGAGGAGGTGGTCGGAGTCAGCTCCTGCGTCCTCGGCGACATGGCTTCCCGCCCCAATTTCGGCCTCAACGAGCTCGACTTCGTCTTCTCGACTCTCGTCGTCGGATGCATACTCAATTTCACGCTCATGTATTTGTTAGCCCCCACTCTGTCCGCCTCCGCCGCCACTCTTCCGTCGATCTTCGCCGGCTGCCCGGCCAGCCACATGTTCGAACCGGGTTCCTATGGATTGGTGAATCGATTGGGGACTTTGGTGTACAAAGGCACAGTCTTTGCCGCCGTTGGGTTCGTCGCCGGGCTAGCCGGAACCGCATTGTCGAACGGGTTGATCAAATTGAGGAAAAAAATGGACCCAAATTTCGAGACCCCAAATAAGCCGCCGCCAACCTTGCTCAATGCGCTCACTTGGGCAGCTCACATGGGTCTTAGCAGCAATTTGAGGTACCAAACGCTGAACGGGGCGGAGTTTTTGCTGGCGAAGGGGCTTCCTCCGCTGGCATTCAAATCGTCTGTGGTGGTTCTGAGGTGTTTGAACAATGTGCTGGGTGGAATGTCGTTTGTTGTGCTGGCGAGGTTGACCGGCTCGCAGAGCATTGCGGAGTCGAAACCGGCGGAAGGGGAGGTGGGATCGGCTTCAGAGAAAGAGAAATTGGTGGTGGTGGAGAGTGAGGATGTGCAGAGCAATCAGTCGACTAACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009648 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0010154 GO:0022414 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0061458 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RETICULATA-like

Protein Analysis

360

Amino Acids

37.6

Weight (kDa)

9.01

Isoelectric Point (pI)

37.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RETICULATA-like	PF11891	113 - 279	4.5e-63	Protein RETICULATA-related

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013257)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08630 AT3G08640
fragaria_vesca	FvH4_6g09440
malus_domestica	MD04G1177700.v1.1 MD12G1193000.v1.1
prunus_persica	Prupe.6G297600_v2.0.a1
pyrus_communis	pycom04g15670
rosa_chinensis	RchiOBHm_Chr3g0459911
rosa_laevigata	RLG00000025052
rosa_multiflora	Rmu_co8396657.1_g000001 Rmu_sc0000240.1_g000046 Rmu_sc0016534.1_g000001
rosa_roxburghii	Rroxscaffold_6G00419920
rosa_rugosa	Rorug03G0038700.1
rosa_samantha	Rh3AG097500 Rh3BG100200 Rh3CG102000 Rh3DG101700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	819
AccB1I	GGYRCC	1 cut(s)	819
AccBSI	CCGCTC	2 cut(s)	14, 215
AccI	GTMKAC	1 cut(s)	1067
AclWI	GGATC	3 cut(s)	327, 344, 1012
AcoI	YGGCCR	1 cut(s)	573
AcsI	RAATTY	1 cut(s)	733
AcuI	CTGAAG	1 cut(s)	996
AfaI	GTAC	2 cut(s)	635, 821
AfiI	CCNNNNNNNGG	4 cut(s)	367, 437, 660, 992
AflIII	ACRYGT	1 cut(s)	582
AgsI	TTSAA	4 cut(s)	96, 367, 880, 910
AhdI	GACNNNNNGTC	1 cut(s)	271
AjuI	GAANNNNNNNTTGG	2 cut(s)	1010, 1042
AloI	GAACNNNNNNTCC	2 cut(s)	288, 320
AluBI	AGCT	6 cut(s)	19, 38, 175, 399, 451, 791
AluI	AGCT	6 cut(s)	19, 38, 175, 399, 451, 791
Alw21I	GWGCWC	1 cut(s)	453
Alw26I	GTCTC	1 cut(s)	734
AlwI	GGATC	3 cut(s)	327, 344, 1012
AlwNI	CAGNNNCTG	1 cut(s)	402
Ama87I	CYCGRG	1 cut(s)	336
AoxI	GGCC	2 cut(s)	439, 573
ApeKI	GCWGC	4 cut(s)	5, 567, 788, 807
ApoI	RAATTY	1 cut(s)	733
ArsI	GACNNNNNNTTYG	4 cut(s)	630, 662, 719, 751
Asp718I	GGTACC	1 cut(s)	819
AspLEI	GCGC	2 cut(s)	209, 778
AspS9I	GGNCC	2 cut(s)	160, 727
AsuC2I	CCSGG	4 cut(s)	242, 572, 594, 673
AsuHPI	GGTGA	1 cut(s)	622
AsuII	TTCGAA	1 cut(s)	588
AsuNHI	GCTAGC	1 cut(s)	676
AvaI	CYCGRG	1 cut(s)	336
AvaII	GGWCC	2 cut(s)	160, 727
BanI	GGYRCC	1 cut(s)	819
BanII	GRGCYC	1 cut(s)	453
BbsI	GAAGAC	2 cut(s)	267, 454
Bbv12I	GWGCWC	1 cut(s)	453
BbvI	GCAGC	4 cut(s)	17, 554, 800, 819
BccI	CCATC	4 cut(s)	161, 245, 321, 370
BceAI	ACGGC	2 cut(s)	54, 641
BcgI	CGANNNNNNTGC	2 cut(s)	864, 898
BclI	TGATCA	1 cut(s)	705
BcnI	CCSGG	4 cut(s)	242, 572, 594, 673
BcoDI	GTCTC	1 cut(s)	734
BfaI	CTAG	1 cut(s)	677
BfmI	CTRYAG	1 cut(s)	33
BlpI	GCTNAGC	1 cut(s)	15
Bme1390I	CCNGG	4 cut(s)	242, 572, 594, 673
Bme18I	GGWCC	2 cut(s)	160, 727
BmeRI	GACNNNNNGTC	1 cut(s)	271
BmeT110I	CYCGRG	1 cut(s)	336
BmgT120I	GGNCC	2 cut(s)	160, 727
BmiI	GGNNCC	6 cut(s)	161, 239, 598, 685, 729, 821
BmrFI	CCNGG	4 cut(s)	242, 572, 594, 673
BmsI	GCATC	1 cut(s)	473
BmtI	GCTAGC	1 cut(s)	680
BoxI	GACNNNNGTC	1 cut(s)	473
BpiI	GAAGAC	2 cut(s)	267, 454
Bpu1102I	GCTNAGC	1 cut(s)	15
Bpu14I	TTCGAA	1 cut(s)	588
BpuMI	CCSGG	4 cut(s)	242, 572, 594, 673
Bsa29I	ATCGAT	1 cut(s)	616
BsaBI	GATNNNNATC	1 cut(s)	331
BsaI	GGTCTC	1 cut(s)	734
BsaJI	CCNNGG	2 cut(s)	241, 409
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bsc4I	CCNNNNNNNGG	4 cut(s)	367, 437, 660, 992
Bse118I	RCCGGY	3 cut(s)	563, 956, 985
Bse3DI	GCAATG	1 cut(s)	969
Bse8I	GATNNNNATC	1 cut(s)	331
BseCI	ATCGAT	1 cut(s)	616
BseDI	CCNNGG	2 cut(s)	241, 409
BseGI	GGATG	3 cut(s)	332, 488, 1054
BseJI	GATNNNNATC	1 cut(s)	331
BseLI	CCNNNNNNNGG	4 cut(s)	367, 437, 660, 992
BseMI	GCAATG	1 cut(s)	969
BseMII	CTCAG	2 cut(s)	29, 890
BseRI	GAGGAG	1 cut(s)	395
BseXI	GCAGC	4 cut(s)	17, 554, 800, 819
BseYI	CCCAGC	1 cut(s)	919
BsgI	GTGCAG	1 cut(s)	1073
BshFI	GGCC	2 cut(s)	441, 575
BshNI	GGYRCC	1 cut(s)	819
BshVI	ATCGAT	1 cut(s)	616
BsiHKAI	GWGCWC	1 cut(s)	453
BsiHKCI	CYCGRG	1 cut(s)	336
BsiSI	CCGG	9 cut(s)	186, 241, 564, 572, 593, 672, 681, 957, 986
BslFI	GGGAC	2 cut(s)	128, 637
BslI	CCNNNNNNNGG	4 cut(s)	367, 437, 660, 992
BsmAI	GTCTC	1 cut(s)	734
BsmFI	GGGAC	2 cut(s)	128, 637
BsmI	GAATGC	1 cut(s)	875
BsnI	GGCC	2 cut(s)	441, 575
Bso31I	GGTCTC	1 cut(s)	734
BsoBI	CYCGRG	1 cut(s)	336
Bsp119I	TTCGAA	1 cut(s)	588
Bsp1286I	GDGCHC	1 cut(s)	453
Bsp1407I	TGTACA	1 cut(s)	633
Bsp143I	GATC	5 cut(s)	332, 349, 555, 705, 1004
Bsp1720I	GCTNAGC	1 cut(s)	15
BspANI	GGCC	2 cut(s)	441, 575
BspCNI	CTCAG	2 cut(s)	28, 891
BspDI	ATCGAT	1 cut(s)	616
BspLI	GGNNCC	6 cut(s)	161, 239, 598, 685, 729, 821
BspOI	GCTAGC	1 cut(s)	680
BspPI	GGATC	3 cut(s)	327, 344, 1012
BspT104I	TTCGAA	1 cut(s)	588
BspT107I	GGYRCC	1 cut(s)	819
BspTNI	GGTCTC	1 cut(s)	734
BsrBI	CCGCTC	2 cut(s)	14, 215
BsrDI	GCAATG	1 cut(s)	969
BsrFI	RCCGGY	3 cut(s)	563, 956, 985
BsrGI	TGTACA	1 cut(s)	633
BssAI	RCCGGY	3 cut(s)	563, 956, 985
BssECI	CCNNGG	2 cut(s)	241, 409
BssMI	GATC	5 cut(s)	332, 349, 555, 705, 1004
Bst4CI	ACNGT	2 cut(s)	34, 646
Bst6I	CTCTTC	1 cut(s)	552
BstAUI	TGTACA	1 cut(s)	633
BstBI	TTCGAA	1 cut(s)	588
BstC8I	GCNNGC	7 cut(s)	565, 577, 678, 852, 873, 945, 962
BstDEI	CTNAG	3 cut(s)	15, 803, 899
BstF5I	GGATG	3 cut(s)	332, 488, 1054
BstHHI	GCGC	2 cut(s)	209, 778
BstKTI	GATC	5 cut(s)	335, 352, 558, 708, 1007
BstMAI	GTCTC	1 cut(s)	734
BstMBI	GATC	5 cut(s)	332, 349, 555, 705, 1004
BstNSI	RCATGY	1 cut(s)	586
BstPAI	GACNNNNGTC	1 cut(s)	473
BstSCI	CCNGG	4 cut(s)	240, 570, 592, 671
BstSFI	CTRYAG	1 cut(s)	33
BstV1I	GCAGC	4 cut(s)	17, 554, 800, 819
BstV2I	GAAGAC	2 cut(s)	267, 454
BstX2I	RGATCY	1 cut(s)	332
BstYI	RGATCY	1 cut(s)	332
Bsu15I	ATCGAT	1 cut(s)	616
BsuRI	GGCC	2 cut(s)	441, 575
BsuTUI	ATCGAT	1 cut(s)	616
BtsCI	GGATG	3 cut(s)	332, 488, 1054
BtsI	GCAGTG	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	43
Cac8I	GCNNGC	7 cut(s)	565, 577, 678, 852, 873, 945, 962
CaiI	CAGNNNCTG	1 cut(s)	402
CfoI	GCGC	2 cut(s)	209, 778
Cfr10I	RCCGGY	3 cut(s)	563, 956, 985
Cfr13I	GGNCC	2 cut(s)	160, 727
ClaI	ATCGAT	1 cut(s)	616
CseI	GACGC	1 cut(s)	394
Csp6I	GTAC	2 cut(s)	634, 820
CviAII	CATG	4 cut(s)	418, 505, 583, 796
CviQI	GTAC	2 cut(s)	634, 820
DdeI	CTNAG	3 cut(s)	15, 803, 899
DpnI	GATC	5 cut(s)	334, 351, 557, 707, 1006
DpnII	GATC	5 cut(s)	332, 349, 555, 705, 1004
DriI	GACNNNNNGTC	1 cut(s)	271
EaeI	YGGCCR	1 cut(s)	573
Eam1104I	CTCTTC	1 cut(s)	552
Eam1105I	GACNNNNNGTC	1 cut(s)	271
EarI	CTCTTC	1 cut(s)	552
EciI	GGCGGA	7 cut(s)	67, 204, 261, 520, 526, 854, 1004
Ecl136II	GAGCTC	1 cut(s)	451
Eco24I	GRGCYC	1 cut(s)	453
Eco31I	GGTCTC	1 cut(s)	734
Eco47I	GGWCC	2 cut(s)	160, 727
Eco53kI	GAGCTC	1 cut(s)	451
Eco57I	CTGAAG	1 cut(s)	996
Eco88I	CYCGRG	1 cut(s)	336
EcoICRI	GAGCTC	1 cut(s)	451
EcoT22I	ATGCAT	1 cut(s)	488
EcoT38I	GRGCYC	1 cut(s)	453
FaeI	CATG	4 cut(s)	421, 508, 586, 799
FaiI	YATR	7 cut(s)	314, 419, 488, 506, 584, 603, 797
FaqI	GGGAC	2 cut(s)	128, 637
FatI	CATG	4 cut(s)	417, 504, 582, 795
FauI	CCCGC	3 cut(s)	208, 221, 434
FbaI	TGATCA	1 cut(s)	705
FblI	GTMKAC	1 cut(s)	1067
FokI	GGATG	3 cut(s)	339, 495, 1061
FriOI	GRGCYC	1 cut(s)	453
FspBI	CTAG	1 cut(s)	677
GlaI	GCGC	2 cut(s)	208, 777
GsaI	CCCAGC	1 cut(s)	923
HaeIII	GGCC	2 cut(s)	441, 575
HapII	CCGG	9 cut(s)	186, 241, 564, 572, 593, 672, 681, 957, 986
HgaI	GACGC	1 cut(s)	394
HhaI	GCGC	2 cut(s)	209, 778
Hin1II	CATG	4 cut(s)	421, 508, 586, 799
Hin6I	GCGC	2 cut(s)	207, 776
HinP1I	GCGC	2 cut(s)	207, 776
HincII	GTYRAC	2 cut(s)	954, 1068
HindII	GTYRAC	2 cut(s)	954, 1068
HinfI	GANTC	8 cut(s)	124, 266, 297, 339, 393, 469, 613, 977
HpaII	CCGG	9 cut(s)	186, 241, 564, 572, 593, 672, 681, 957, 986
HphI	GGTGA	1 cut(s)	622
Hpy166II	GTNNAC	3 cut(s)	634, 954, 1068
Hpy188I	TCNGA	8 cut(s)	61, 262, 302, 375, 392, 482, 900, 1015
Hpy188III	TCNNGA	4 cut(s)	294, 336, 466, 739
Hpy8I	GTNNAC	3 cut(s)	634, 954, 1068
Hpy99I	CGWCG	8 cut(s)	274, 283, 286, 289, 479, 482, 556, 671
HpyAV	CCTTC	4 cut(s)	112, 373, 850, 986
HpyCH4III	ACNGT	2 cut(s)	34, 646
HpyCH4V	TGCA	2 cut(s)	486, 1054
HpyF3I	CTNAG	3 cut(s)	15, 803, 899
Hsp92II	CATG	4 cut(s)	421, 508, 586, 799
HspAI	GCGC	2 cut(s)	207, 776
KpnI	GGTACC	1 cut(s)	823
KroI	GCCGGC	1 cut(s)	563
KroNI	GCCGGC	1 cut(s)	565
Ksp22I	TGATCA	1 cut(s)	705
Kzo9I	GATC	5 cut(s)	332, 349, 555, 705, 1004
LmnI	GCTCC	3 cut(s)	212, 237, 404
Lsp1109I	GCAGC	4 cut(s)	17, 554, 800, 819
LweI	GCATC	1 cut(s)	473
MaeI	CTAG	1 cut(s)	677
MalI	GATC	5 cut(s)	334, 351, 557, 707, 1006
MbiI	CCGCTC	2 cut(s)	14, 215
MboI	GATC	5 cut(s)	332, 349, 555, 705, 1004
MboII	GAAGA	5 cut(s)	84, 267, 454, 539, 550
MflI	RGATCY	1 cut(s)	332
MhlI	GDGCHC	1 cut(s)	453
MluCI	AATT	7 cut(s)	88, 433, 493, 710, 733, 811, 1025
MlyI	GAGTC	5 cut(s)	260, 348, 402, 463, 986
MmeI	TCCRAC	2 cut(s)	370, 460
Mph1103I	ATGCAT	1 cut(s)	488
MroNI	GCCGGC	1 cut(s)	563
MslI	CAYNNNNRTG	1 cut(s)	503
MspA1I	CMGCKG	2 cut(s)	228, 871
MspI	CCGG	9 cut(s)	186, 241, 564, 572, 593, 672, 681, 957, 986
MspR9I	CCNGG	4 cut(s)	242, 572, 594, 673
Mva1269I	GAATGC	1 cut(s)	875
NaeI	GCCGGC	1 cut(s)	565
NciI	CCSGG	4 cut(s)	242, 572, 594, 673
NdeII	GATC	5 cut(s)	332, 349, 555, 705, 1004
NgoMIV	GCCGGC	1 cut(s)	563
NheI	GCTAGC	1 cut(s)	676
NlaIII	CATG	4 cut(s)	421, 508, 586, 799
NlaIV	GGNNCC	6 cut(s)	161, 239, 598, 685, 729, 821
NmeAIII	GCCGAG	1 cut(s)	390
NsiI	ATGCAT	1 cut(s)	488
NspI	RCATGY	1 cut(s)	586
NspV	TTCGAA	1 cut(s)	588
PciI	ACATGT	1 cut(s)	582
PcsI	WCGNNNNNNNCGW	3 cut(s)	275, 278, 444
PctI	GAATGC	1 cut(s)	875
PdiI	GCCGGC	1 cut(s)	565
PfeI	GAWTC	3 cut(s)	124, 297, 613
PflFI	GACNNNGTC	1 cut(s)	458
PleI	GAGTC	5 cut(s)	260, 347, 401, 463, 985
PpsI	GAGTC	5 cut(s)	260, 347, 401, 463, 985
PscI	ACATGT	1 cut(s)	582
PshAI	GACNNNNGTC	1 cut(s)	473
Psp124BI	GAGCTC	1 cut(s)	453
PspFI	CCCAGC	1 cut(s)	919
PspN4I	GGNNCC	6 cut(s)	161, 239, 598, 685, 729, 821
PspPI	GGNCC	2 cut(s)	160, 727
PstNI	CAGNNNCTG	1 cut(s)	402
PsuI	RGATCY	1 cut(s)	332
PsyI	GACNNNGTC	1 cut(s)	458
RsaI	GTAC	2 cut(s)	635, 821
RsaNI	GTAC	2 cut(s)	634, 820
RseI	CAYNNNNRTG	1 cut(s)	503
SacI	GAGCTC	1 cut(s)	453
SalI	GTCGAC	1 cut(s)	1066
Sau3AI	GATC	5 cut(s)	332, 349, 555, 705, 1004
Sau96I	GGNCC	2 cut(s)	160, 727
SchI	GAGTC	5 cut(s)	260, 348, 402, 463, 986
ScrFI	CCNGG	4 cut(s)	242, 572, 594, 673
SduI	GDGCHC	1 cut(s)	453
SfaNI	GCATC	1 cut(s)	473
SfcI	CTRYAG	1 cut(s)	33
SfuI	TTCGAA	1 cut(s)	588
SinI	GGWCC	2 cut(s)	160, 727
SmiMI	CAYNNNNRTG	1 cut(s)	503
Sse9I	AATT	7 cut(s)	88, 433, 493, 710, 733, 811, 1025
SspMI	CTAG	1 cut(s)	677
SstI	GAGCTC	1 cut(s)	453
StyD4I	CCNGG	4 cut(s)	240, 570, 592, 671
TaaI	ACNGT	2 cut(s)	34, 646
TasI	AATT	7 cut(s)	88, 433, 493, 710, 733, 811, 1025
TatI	WGTACW	1 cut(s)	633
TfiI	GAWTC	3 cut(s)	124, 297, 613
TscAI	CASTG	1 cut(s)	50
TseI	GCWGC	4 cut(s)	5, 567, 788, 807
TspGWI	ACGGA	1 cut(s)	540
TspRI	CASTG	1 cut(s)	50
Tth111I	GACNNNGTC	1 cut(s)	458
VpaK11BI	GGWCC	2 cut(s)	160, 727
XapI	RAATTY	1 cut(s)	733
XceI	RCATGY	1 cut(s)	586
XcmI	CCANNNNNNNNNTGG	1 cut(s)	153
XmiI	GTMKAC	1 cut(s)	1067
XspI	CTAG	1 cut(s)	677
Zsp2I	ATGCAT	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.