Belongs to the NPH3 family
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G08570 AT3G08660 AT3G08660 AT3G08660 |
| fragaria_vesca | FvH4_6g09490 FvH4_6g09490 FvH4_6g09490 FvH4_6g09490 |
| malus_domestica | MD04G1177100.v1.1 MD12G1192300.v1.1 |
| prunus_persica | Prupe.6G296800_v2.0.a1 Prupe.6G296800_v2.0.a1 |
| pyrus_communis | pycom04g15640 pycom12g17930 |
| rosa_chinensis | RchiOBHm_Chr3g0460071 |
| rosa_laevigata | RLG00000025046 |
| rosa_multiflora | Rmu_sc0000449.1_g000056 Rmu_sc0007694.1_g000002 |
| rosa_roxburghii | Rroxscaffold_6G00419870 |
| rosa_rugosa | Rorug03G0039200 Rorug03G0039300 |
| rosa_samantha | Rh3AG097700 Rh3BG100800 Rh3CG102900 Rh3DG102100 |
| rosa_wichuraiana | Rw3G008240 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1639 |
| AatII | GACGTC | 1 cut(s) | 1637 |
| AccBSI | CCGCTC | 1 cut(s) | 1469 |
| AccI | GTMKAC | 1 cut(s) | 1153 |
| AccII | CGCG | 2 cut(s) | 929, 1664 |
| AciI | CCGC | 5 cut(s) | 104, 667, 927, 1469, 1740 |
| AclI | AACGTT | 1 cut(s) | 1625 |
| AclWI | GGATC | 6 cut(s) | 808, 1112, 1133, 1146, 1223, 1667 |
| AcsI | RAATTY | 2 cut(s) | 275, 489 |
| AcuI | CTGAAG | 3 cut(s) | 618, 1421, 1541 |
| AcvI | CACGTG | 1 cut(s) | 1333 |
| AcyI | GRCGYC | 1 cut(s) | 1634 |
| AfaI | GTAC | 4 cut(s) | 447, 980, 1359, 1458 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 505, 999, 1690 |
| AflIII | ACRYGT | 1 cut(s) | 1485 |
| AgeI | ACCGGT | 1 cut(s) | 498 |
| AgsI | TTSAA | 5 cut(s) | 263, 764, 899, 975, 1031 |
| AjnI | CCWGG | 2 cut(s) | 241, 741 |
| AluBI | AGCT | 8 cut(s) | 167, 229, 565, 895, 1282, 1409, 1519, 1525 |
| AluI | AGCT | 8 cut(s) | 167, 229, 565, 895, 1282, 1409, 1519, 1525 |
| Alw21I | GWGCWC | 1 cut(s) | 567 |
| Alw26I | GTCTC | 8 cut(s) | 27, 325, 455, 587, 917, 936, 1172, 1476 |
| AlwI | GGATC | 6 cut(s) | 808, 1112, 1133, 1146, 1223, 1667 |
| Ama87I | CYCGRG | 3 cut(s) | 584, 614, 890 |
| AoxI | GGCC | 1 cut(s) | 510 |
| ApeKI | GCWGC | 3 cut(s) | 335, 1351, 1493 |
| ApoI | RAATTY | 2 cut(s) | 275, 489 |
| AseI | ATTAAT | 1 cut(s) | 291 |
| AsiGI | ACCGGT | 1 cut(s) | 498 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 138 |
| AspLEI | GCGC | 1 cut(s) | 335 |
| AspS9I | GGNCC | 1 cut(s) | 248 |
| AsuC2I | CCSGG | 1 cut(s) | 1684 |
| AsuHPI | GGTGA | 5 cut(s) | 70, 119, 205, 259, 1705 |
| AvaI | CYCGRG | 3 cut(s) | 584, 614, 890 |
| AvaII | GGWCC | 1 cut(s) | 248 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1183, 1216 |
| BamHI | GGATCC | 1 cut(s) | 1138 |
| BanII | GRGCYC | 2 cut(s) | 8, 567 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 670, 702 |
| BbrPI | CACGTG | 1 cut(s) | 1333 |
| Bbv12I | GWGCWC | 1 cut(s) | 567 |
| BbvI | GCAGC | 3 cut(s) | 322, 1338, 1505 |
| BccI | CCATC | 6 cut(s) | 122, 184, 521, 643, 1205, 1591 |
| BceAI | ACGGC | 2 cut(s) | 301, 1182 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 277, 287, 311, 321 |
| BciT130I | CCWGG | 2 cut(s) | 243, 743 |
| BciVI | GTATCC | 2 cut(s) | 982, 996 |
| BcnI | CCSGG | 1 cut(s) | 1684 |
| BcoDI | GTCTC | 8 cut(s) | 27, 325, 455, 587, 917, 936, 1172, 1476 |
| BfaI | CTAG | 2 cut(s) | 168, 443 |
| BfmI | CTRYAG | 1 cut(s) | 1219 |
| BfuI | GTATCC | 2 cut(s) | 982, 996 |
| BglII | AGATCT | 2 cut(s) | 199, 876 |
| BisI | GCNGC | 3 cut(s) | 336, 1352, 1494 |
| BlsI | GCNGC | 3 cut(s) | 337, 1353, 1495 |
| BmcAI | AGTACT | 1 cut(s) | 447 |
| Bme1390I | CCNGG | 3 cut(s) | 243, 743, 1684 |
| Bme18I | GGWCC | 1 cut(s) | 248 |
| BmeT110I | CYCGRG | 3 cut(s) | 584, 614, 890 |
| BmgT120I | GGNCC | 1 cut(s) | 248 |
| BmiI | GGNNCC | 1 cut(s) | 1140 |
| BmrFI | CCNGG | 3 cut(s) | 243, 743, 1684 |
| BmsI | GCATC | 2 cut(s) | 922, 1102 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 567, 599 |
| BpmI | CTGGAG | 1 cut(s) | 1473 |
| BpuEI | CTTGAG | 6 cut(s) | 188, 368, 551, 833, 1040, 1226 |
| BpuMI | CCSGG | 1 cut(s) | 1684 |
| Bsa29I | ATCGAT | 1 cut(s) | 729 |
| BsaAI | YACGTR | 3 cut(s) | 1199, 1333, 1488 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1236 |
| BsaHI | GRCGYC | 1 cut(s) | 1634 |
| BsaI | GGTCTC | 2 cut(s) | 325, 917 |
| BsaJI | CCNNGG | 2 cut(s) | 241, 768 |
| BsaWI | WCCGGW | 4 cut(s) | 498, 1135, 1607, 1698 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 41, 71, 565, 595 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 505, 999, 1690 |
| Bse118I | RCCGGY | 1 cut(s) | 498 |
| Bse1I | ACTGG | 1 cut(s) | 1075 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1236 |
| BseBI | CCWGG | 2 cut(s) | 243, 743 |
| BseCI | ATCGAT | 1 cut(s) | 729 |
| BseDI | CCNNGG | 2 cut(s) | 241, 768 |
| BseGI | GGATG | 3 cut(s) | 1117, 1249, 1545 |
| BseJI | GATNNNNATC | 1 cut(s) | 1236 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 505, 999, 1690 |
| BseMII | CTCAG | 3 cut(s) | 21, 348, 1139 |
| BseNI | ACTGG | 1 cut(s) | 1075 |
| BseRI | GAGGAG | 4 cut(s) | 30, 49, 575, 1516 |
| BseXI | GCAGC | 3 cut(s) | 322, 1338, 1505 |
| Bsh1236I | CGCG | 2 cut(s) | 929, 1664 |
| Bsh1285I | CGRYCG | 2 cut(s) | 733, 1348 |
| BshFI | GGCC | 1 cut(s) | 512 |
| BshTI | ACCGGT | 1 cut(s) | 498 |
| BshVI | ATCGAT | 1 cut(s) | 729 |
| BsiEI | CGRYCG | 2 cut(s) | 733, 1348 |
| BsiHKAI | GWGCWC | 1 cut(s) | 567 |
| BsiHKCI | CYCGRG | 3 cut(s) | 584, 614, 890 |
| BsiSI | CCGG | 5 cut(s) | 499, 1136, 1608, 1684, 1699 |
| BslFI | GGGAC | 1 cut(s) | 1113 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 505, 999, 1690 |
| BsmAI | GTCTC | 8 cut(s) | 27, 325, 455, 587, 917, 936, 1172, 1476 |
| BsmBI | CGTCTC | 2 cut(s) | 455, 936 |
| BsmFI | GGGAC | 1 cut(s) | 1113 |
| BsmI | GAATGC | 2 cut(s) | 529, 849 |
| BsnI | GGCC | 1 cut(s) | 512 |
| Bso31I | GGTCTC | 2 cut(s) | 325, 917 |
| BsoBI | CYCGRG | 3 cut(s) | 584, 614, 890 |
| Bsp1286I | GDGCHC | 2 cut(s) | 8, 567 |
| Bsp1407I | TGTACA | 1 cut(s) | 1357 |
| Bsp19I | CCATGG | 1 cut(s) | 768 |
| Bsp68I | TCGCGA | 1 cut(s) | 1664 |
| BspACI | CCGC | 5 cut(s) | 104, 667, 927, 1469, 1740 |
| BspANI | GGCC | 1 cut(s) | 512 |
| BspCNI | CTCAG | 3 cut(s) | 20, 349, 1140 |
| BspDI | ATCGAT | 1 cut(s) | 729 |
| BspFNI | CGCG | 2 cut(s) | 929, 1664 |
| BspHI | TCATGA | 1 cut(s) | 430 |
| BspLI | GGNNCC | 1 cut(s) | 1140 |
| BspPI | GGATC | 6 cut(s) | 808, 1112, 1133, 1146, 1223, 1667 |
| BspTNI | GGTCTC | 2 cut(s) | 325, 917 |
| BsrBI | CCGCTC | 1 cut(s) | 1469 |
| BsrFI | RCCGGY | 1 cut(s) | 498 |
| BsrGI | TGTACA | 1 cut(s) | 1357 |
| BsrI | ACTGG | 1 cut(s) | 1075 |
| BssAI | RCCGGY | 1 cut(s) | 498 |
| BssECI | CCNNGG | 2 cut(s) | 241, 768 |
| BssNI | GRCGYC | 1 cut(s) | 1634 |
| BssT1I | CCWWGG | 1 cut(s) | 768 |
| Bst2UI | CCWGG | 2 cut(s) | 243, 743 |
| Bst4CI | ACNGT | 4 cut(s) | 994, 1082, 1392, 1641 |
| Bst6I | CTCTTC | 2 cut(s) | 217, 1026 |
| BstACI | GRCGYC | 1 cut(s) | 1634 |
| BstAUI | TGTACA | 1 cut(s) | 1357 |
| BstBAI | YACGTR | 3 cut(s) | 1199, 1333, 1488 |
| BstC8I | GCNNGC | 4 cut(s) | 529, 665, 887, 1324 |
| BstDEI | CTNAG | 4 cut(s) | 7, 230, 357, 1148 |
| BstDSI | CCRYGG | 1 cut(s) | 768 |
| BstF5I | GGATG | 3 cut(s) | 1117, 1249, 1545 |
| BstFNI | CGCG | 2 cut(s) | 929, 1664 |
| BstHHI | GCGC | 1 cut(s) | 335 |
| BstMAI | GTCTC | 8 cut(s) | 27, 325, 455, 587, 917, 936, 1172, 1476 |
| BstMCI | CGRYCG | 2 cut(s) | 733, 1348 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 12, 524 |
| BstNI | CCWGG | 2 cut(s) | 243, 743 |
| BstSCI | CCNGG | 3 cut(s) | 241, 741, 1682 |
| BstSFI | CTRYAG | 1 cut(s) | 1219 |
| BstUI | CGCG | 2 cut(s) | 929, 1664 |
| BstV1I | GCAGC | 3 cut(s) | 322, 1338, 1505 |
| BstX2I | RGATCY | 5 cut(s) | 199, 800, 876, 1138, 1215 |
| BstYI | RGATCY | 5 cut(s) | 199, 800, 876, 1138, 1215 |
| Bsu15I | ATCGAT | 1 cut(s) | 729 |
| BsuI | GTATCC | 2 cut(s) | 982, 996 |
| BsuRI | GGCC | 1 cut(s) | 512 |
| BsuTUI | ATCGAT | 1 cut(s) | 729 |
| BtgI | CCRYGG | 1 cut(s) | 768 |
| BtgZI | GCGATG | 2 cut(s) | 499, 662 |
| BtsCI | GGATG | 3 cut(s) | 1117, 1249, 1545 |
| BtsI | GCAGTG | 1 cut(s) | 303 |
| BtsIMutI | CAGTG | 3 cut(s) | 303, 1068, 1637 |
| BtuMI | TCGCGA | 1 cut(s) | 1664 |
| Cac8I | GCNNGC | 4 cut(s) | 529, 665, 887, 1324 |
| CciI | TCATGA | 1 cut(s) | 430 |
| CfoI | GCGC | 1 cut(s) | 335 |
| Cfr10I | RCCGGY | 1 cut(s) | 498 |
| Cfr13I | GGNCC | 1 cut(s) | 248 |
| ClaI | ATCGAT | 1 cut(s) | 729 |
| CseI | GACGC | 2 cut(s) | 472, 918 |
| Csp6I | GTAC | 4 cut(s) | 446, 979, 1358, 1457 |
| CspAI | ACCGGT | 1 cut(s) | 498 |
| CviAII | CATG | 6 cut(s) | 271, 431, 520, 769, 1108, 1589 |
| CviQI | GTAC | 4 cut(s) | 446, 979, 1358, 1457 |
| DdeI | CTNAG | 4 cut(s) | 7, 230, 357, 1148 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1639 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1639 |
| Eam1104I | CTCTTC | 2 cut(s) | 217, 1026 |
| EarI | CTCTTC | 2 cut(s) | 217, 1026 |
| Ecl136II | GAGCTC | 1 cut(s) | 565 |
| Eco130I | CCWWGG | 1 cut(s) | 768 |
| Eco24I | GRGCYC | 2 cut(s) | 8, 567 |
| Eco31I | GGTCTC | 2 cut(s) | 325, 917 |
| Eco32I | GATATC | 1 cut(s) | 301 |
| Eco47I | GGWCC | 1 cut(s) | 248 |
| Eco53kI | GAGCTC | 1 cut(s) | 565 |
| Eco57I | CTGAAG | 3 cut(s) | 618, 1421, 1541 |
| Eco72I | CACGTG | 1 cut(s) | 1333 |
| Eco88I | CYCGRG | 3 cut(s) | 584, 614, 890 |
| EcoICRI | GAGCTC | 1 cut(s) | 565 |
| EcoRII | CCWGG | 2 cut(s) | 241, 741 |
| EcoRV | GATATC | 1 cut(s) | 301 |
| EcoT14I | CCWWGG | 1 cut(s) | 768 |
| EcoT38I | GRGCYC | 2 cut(s) | 8, 567 |
| ErhI | CCWWGG | 1 cut(s) | 768 |
| Esp3I | CGTCTC | 2 cut(s) | 455, 936 |
| FaeI | CATG | 6 cut(s) | 274, 434, 523, 772, 1111, 1592 |
| FaqI | GGGAC | 1 cut(s) | 1113 |
| FatI | CATG | 6 cut(s) | 270, 430, 519, 768, 1107, 1588 |
| FauI | CCCGC | 1 cut(s) | 97 |
| FauNDI | CATATG | 1 cut(s) | 484 |
| FblI | GTMKAC | 1 cut(s) | 1153 |
| Fnu4HI | GCNGC | 3 cut(s) | 336, 1352, 1494 |
| FokI | GGATG | 3 cut(s) | 1124, 1236, 1552 |
| FriOI | GRGCYC | 2 cut(s) | 8, 567 |
| Fsp4HI | GCNGC | 3 cut(s) | 336, 1352, 1494 |
| FspBI | CTAG | 2 cut(s) | 168, 443 |
| GlaI | GCGC | 1 cut(s) | 334 |
| GluI | GCNGC | 3 cut(s) | 336, 1352, 1494 |
| GsuI | CTGGAG | 1 cut(s) | 1473 |
| HaeIII | GGCC | 1 cut(s) | 512 |
| HapII | CCGG | 5 cut(s) | 499, 1136, 1608, 1684, 1699 |
| HgaI | GACGC | 2 cut(s) | 472, 918 |
| HhaI | GCGC | 1 cut(s) | 335 |
| Hin1I | GRCGYC | 1 cut(s) | 1634 |
| Hin1II | CATG | 6 cut(s) | 274, 434, 523, 772, 1111, 1592 |
| Hin6I | GCGC | 1 cut(s) | 333 |
| HinP1I | GCGC | 1 cut(s) | 333 |
| HincII | GTYRAC | 2 cut(s) | 775, 1207 |
| HindII | GTYRAC | 2 cut(s) | 775, 1207 |
| HinfI | GANTC | 9 cut(s) | 134, 209, 434, 906, 971, 1058, 1064, 1150, 1421 |
| HpaI | GTTAAC | 1 cut(s) | 775 |
| HpaII | CCGG | 5 cut(s) | 499, 1136, 1608, 1684, 1699 |
| HphI | GGTGA | 5 cut(s) | 70, 119, 205, 259, 1705 |
| Hpy166II | GTNNAC | 8 cut(s) | 248, 594, 775, 997, 1154, 1164, 1207, 1696 |
| Hpy188I | TCNGA | 8 cut(s) | 10, 97, 559, 673, 857, 1063, 1426, 1720 |
| Hpy8I | GTNNAC | 8 cut(s) | 248, 594, 775, 997, 1154, 1164, 1207, 1696 |
| Hpy99I | CGWCG | 2 cut(s) | 259, 686 |
| HpyAV | CCTTC | 6 cut(s) | 39, 261, 963, 1424, 1458, 1650 |
| HpyCH4III | ACNGT | 4 cut(s) | 994, 1082, 1392, 1641 |
| HpyCH4IV | ACGT | 9 cut(s) | 257, 315, 630, 901, 1198, 1332, 1487, 1625, 1634 |
| HpyCH4V | TGCA | 6 cut(s) | 531, 697, 885, 1287, 1302, 1493 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 12, 524 |
| HpyF3I | CTNAG | 4 cut(s) | 7, 230, 357, 1148 |
| HpySE526I | ACGT | 9 cut(s) | 257, 315, 630, 901, 1198, 1332, 1487, 1625, 1634 |
| Hsp92I | GRCGYC | 1 cut(s) | 1634 |
| Hsp92II | CATG | 6 cut(s) | 274, 434, 523, 772, 1111, 1592 |
| HspAI | GCGC | 1 cut(s) | 333 |
| KspAI | GTTAAC | 1 cut(s) | 775 |
| LmnI | GCTCC | 3 cut(s) | 62, 458, 562 |
| Lsp1109I | GCAGC | 3 cut(s) | 322, 1338, 1505 |
| LweI | GCATC | 2 cut(s) | 922, 1102 |
| MaeI | CTAG | 2 cut(s) | 168, 443 |
| MaeII | ACGT | 9 cut(s) | 257, 315, 630, 901, 1198, 1332, 1487, 1625, 1634 |
| MaeIII | GTNAC | 4 cut(s) | 47, 107, 1052, 1635 |
| MbiI | CCGCTC | 1 cut(s) | 1469 |
| MflI | RGATCY | 5 cut(s) | 199, 800, 876, 1138, 1215 |
| MhlI | GDGCHC | 2 cut(s) | 8, 567 |
| MluCI | AATT | 7 cut(s) | 275, 292, 397, 489, 816, 1576, 1650 |
| MlyI | GAGTC | 2 cut(s) | 203, 1159 |
| MmeI | TCCRAC | 3 cut(s) | 95, 835, 1698 |
| MroXI | GAANNNNTTC | 1 cut(s) | 138 |
| MseI | TTAA | 5 cut(s) | 291, 312, 659, 716, 774 |
| MslI | CAYNNNNRTG | 2 cut(s) | 518, 1232 |
| MspI | CCGG | 5 cut(s) | 499, 1136, 1608, 1684, 1699 |
| MspR9I | CCNGG | 3 cut(s) | 243, 743, 1684 |
| Mva1269I | GAATGC | 2 cut(s) | 529, 849 |
| MvaI | CCWGG | 2 cut(s) | 243, 743 |
| MvnI | CGCG | 2 cut(s) | 929, 1664 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 12, 524 |
| NciI | CCSGG | 1 cut(s) | 1684 |
| NcoI | CCATGG | 1 cut(s) | 768 |
| NdeI | CATATG | 1 cut(s) | 484 |
| NlaIII | CATG | 6 cut(s) | 274, 434, 523, 772, 1111, 1592 |
| NlaIV | GGNNCC | 1 cut(s) | 1140 |
| NmeAIII | GCCGAG | 2 cut(s) | 418, 1490 |
| NmuCI | GTSAC | 2 cut(s) | 107, 1635 |
| NruI | TCGCGA | 1 cut(s) | 1664 |
| PaeR7I | CTCGAG | 2 cut(s) | 584, 890 |
| PagI | TCATGA | 1 cut(s) | 430 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 411, 1493, 1631 |
| PctI | GAATGC | 2 cut(s) | 529, 849 |
| PdmI | GAANNNNTTC | 1 cut(s) | 138 |
| PfeI | GAWTC | 7 cut(s) | 134, 434, 906, 971, 1058, 1064, 1421 |
| PflFI | GACNNNGTC | 1 cut(s) | 928 |
| PinAI | ACCGGT | 1 cut(s) | 498 |
| PkrI | GCNGC | 3 cut(s) | 337, 1353, 1495 |
| Ple19I | CGATCG | 2 cut(s) | 733, 1348 |
| PleI | GAGTC | 2 cut(s) | 203, 1158 |
| PmaCI | CACGTG | 1 cut(s) | 1333 |
| PmlI | CACGTG | 1 cut(s) | 1333 |
| PpsI | GAGTC | 2 cut(s) | 203, 1158 |
| Ppu21I | YACGTR | 3 cut(s) | 1199, 1333, 1488 |
| PshBI | ATTAAT | 1 cut(s) | 291 |
| Psp124BI | GAGCTC | 1 cut(s) | 567 |
| Psp1406I | AACGTT | 1 cut(s) | 1625 |
| Psp6I | CCWGG | 2 cut(s) | 241, 741 |
| PspCI | CACGTG | 1 cut(s) | 1333 |
| PspGI | CCWGG | 2 cut(s) | 241, 741 |
| PspN4I | GGNNCC | 1 cut(s) | 1140 |
| PspPI | GGNCC | 1 cut(s) | 248 |
| PspXI | VCTCGAGB | 1 cut(s) | 890 |
| PsuI | RGATCY | 5 cut(s) | 199, 800, 876, 1138, 1215 |
| PsyI | GACNNNGTC | 1 cut(s) | 928 |
| PvuI | CGATCG | 2 cut(s) | 733, 1348 |
| RruI | TCGCGA | 1 cut(s) | 1664 |
| RsaI | GTAC | 4 cut(s) | 447, 980, 1359, 1458 |
| RsaNI | GTAC | 4 cut(s) | 446, 979, 1358, 1457 |
| RseI | CAYNNNNRTG | 2 cut(s) | 518, 1232 |
| SacI | GAGCTC | 1 cut(s) | 567 |
| SaqAI | TTAA | 5 cut(s) | 291, 312, 659, 716, 774 |
| SatI | GCNGC | 3 cut(s) | 336, 1352, 1494 |
| Sau96I | GGNCC | 1 cut(s) | 248 |
| ScaI | AGTACT | 1 cut(s) | 447 |
| SchI | GAGTC | 2 cut(s) | 203, 1159 |
| ScrFI | CCNGG | 3 cut(s) | 243, 743, 1684 |
| SduI | GDGCHC | 2 cut(s) | 8, 567 |
| SfaNI | GCATC | 2 cut(s) | 922, 1102 |
| SfcI | CTRYAG | 1 cut(s) | 1219 |
| Sfr274I | CTCGAG | 2 cut(s) | 584, 890 |
| SinI | GGWCC | 1 cut(s) | 248 |
| SlaI | CTCGAG | 2 cut(s) | 584, 890 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 518, 1232 |
| SmlI | CTYRAG | 8 cut(s) | 203, 347, 566, 584, 848, 890, 1019, 1241 |
| SmoI | CTYRAG | 8 cut(s) | 203, 347, 566, 584, 848, 890, 1019, 1241 |
| Sse9I | AATT | 7 cut(s) | 275, 292, 397, 489, 816, 1576, 1650 |
| SsiI | CCGC | 5 cut(s) | 104, 667, 927, 1469, 1740 |
| SspMI | CTAG | 2 cut(s) | 168, 443 |
| SstI | GAGCTC | 1 cut(s) | 567 |
| StyD4I | CCNGG | 3 cut(s) | 241, 741, 1682 |
| StyI | CCWWGG | 1 cut(s) | 768 |
| TaaI | ACNGT | 4 cut(s) | 994, 1082, 1392, 1641 |
| TaiI | ACGT | 9 cut(s) | 260, 318, 633, 904, 1201, 1335, 1490, 1628, 1637 |
| TasI | AATT | 7 cut(s) | 275, 292, 397, 489, 816, 1576, 1650 |
| TatI | WGTACW | 3 cut(s) | 445, 1357, 1456 |
| TfiI | GAWTC | 7 cut(s) | 134, 434, 906, 971, 1058, 1064, 1421 |
| Tru1I | TTAA | 5 cut(s) | 291, 312, 659, 716, 774 |
| Tru9I | TTAA | 5 cut(s) | 291, 312, 659, 716, 774 |
| TscAI | CASTG | 3 cut(s) | 310, 1075, 1644 |
| TseFI | GTSAC | 2 cut(s) | 107, 1635 |
| TseI | GCWGC | 3 cut(s) | 335, 1351, 1493 |
| Tsp45I | GTSAC | 2 cut(s) | 107, 1635 |
| TspDTI | ATGAA | 9 cut(s) | 24, 287, 419, 447, 501, 536, 1059, 1282, 1598 |
| TspGWI | ACGGA | 3 cut(s) | 147, 317, 1117 |
| TspRI | CASTG | 3 cut(s) | 310, 1075, 1644 |
| Tth111I | GACNNNGTC | 1 cut(s) | 928 |
| VpaK11BI | GGWCC | 1 cut(s) | 248 |
| VspI | ATTAAT | 1 cut(s) | 291 |
| XapI | RAATTY | 2 cut(s) | 275, 489 |
| XhoI | CTCGAG | 2 cut(s) | 584, 890 |
| XmiI | GTMKAC | 1 cut(s) | 1153 |
| XmnI | GAANNNNTTC | 1 cut(s) | 138 |
| XspI | CTAG | 2 cut(s) | 168, 443 |
| ZraI | GACGTC | 1 cut(s) | 1635 |
| ZrmI | AGTACT | 1 cut(s) | 447 |