Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0006676

Physical Location & Seq

Genomic Coordinates Forward (+)

8178472 .. 8182147

Gene Structure 3676 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG102900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1920 bp

ATGGCCAACATGAGAATTGAGATTTTTTTTCTTCCTCATTTGCAACCTTATTGTCCTTTGCTTGTCGAATTGAATGTTGTTAAATTGATAAACTTGGATGTGGAGAGCCCCAATTCTTTGCTGGTCATATTCTTGAGTCGATCATGCTGGTTGTTCACTGCTATATTGGAGGTTTTATGTTCATGCAGTATCTTTTCGGATGTTGCTGGGGACGTTACAATCCTTGTCGATGGAGAATCCTTCCTACTTCACAAGTTTCCATTGGTGTCTCGAAGTGGAAAGATTCGGAAAATGGTTGCAGATGCCAAGGATTCAGCTGCAAAATTGGAGCTCCACAACATACCAGGAGGACCACAGGCATTTGAACTTGCAATGAAATTTTGTTATGGCATGAACTTTGAGATCACAAGCGGAAATGTTGCCCATCTTCGCTGTGCTGCTGAATACTTGGAAATGTCTGAAGACTATAGGGATGAAAACCTTATTGAGCGAACAGAGATTTACCTGAATGATGTTGTAGTTCAAAGTCTTGAGAAGTCAGTGGAAGTCCTCACCACCTGCCAAACACTACCTCCTATAGCCGAGGAGGTTGGAATTCCAAGCAGATGTGTGGAGGCTATTGCCACCAATGCTTGTAAGGAACAATTGATGTCAGGGTTGTCTATGTTAAATTGTGATGGTGAATCTCCTGAGCTTAAGAGTGGTTGTCTCGAGTGGTGGGTTGAGGATCTCTCATTGCTAAGGATCGAATACTATCAGAGGGTTATTTTTGCCATGCAAAGAACAGGTGTTCGACCAGATAGCATTGTTGCATCTTTAATGCATTTTGCTCAAACATCCTTAAAGGGTATTGGAAAATGTCAAATTTGGAAAAAGCCAGATAGCTTACCAGAACATGACCAAAGGACTATTGTGGAAACCCTTATAAGCTTAATGCCAACAGAGAAAAGCTGTTCGGTGCCACTGAGTTTTATGTTTGGAATGCTGAGGATGTCAATCATGGTGGATGCTGCAATTGCCTGCAGGCTCGAGATTGAAAGGAGGATTGCTTACAGGTTGGAGATGGTTACACTAGATGATATCCTTATACCGTCCATTTATGCAGGGGGTTCACTGTATGATGTTGATACCGTTCATCGAATACTGGTGAACTTCCTACAGCGGATTGAAGAAGAAGAAGATGAGGACTGTGGATATGAGTCGGAAGGCATTGCTAATTCTCCGAGCCATGGTTCATTGTTGAAAGTTGGACGGCTTATTGACTCATATCTAGCTGAAATTGCTCCTGACCCATACCTCAGCTTGCAAAAGTTCGTTGCTATGATTGAAGTACTGCCTGATTATGCTCGAGTCATCGATGATGGACTTTACAGGGCGGTTGATATATATTTGAAGGTACATTCAATGCTAACTGAACAAGAATGCAAGAAGCTCTGCAAGTTTATAGACTGTCAAAAGCTCTCTCAAGAAGCCTGCAACCATGCTGCACAAAATGATCGGCTCCCAGTACAAATGACAGTGAGGGTTCTGTATTTCGAGCAGGTCCGATTGAAGACTGCACTGTCAGGAAACTCAGGAGATGGGTTTGTCTCGCAGAGAATAAGCAGCGGGGTACCAAGTGCAGCCATGTCCCCCCGAGATAACTATGCTTCATTGAGGAGAGAAAACCGAGAGCTGAAGCTGGAGATCTCAAGAATGAGAGTGAGGCTGAGCGAGTTGGAGAAAGAGCAGTTGTTTATGAAACAAGGAATGATGGACAAGACAGGAAATGGCAAAACTTTCTTGACCTCAATCTCTAAGGGGATTGGAAAAATGGGAATTTTTAGTGGTCAAGCAGGAGGTAAACGACAGAAATCGAGTAGGAAGTCCCGGGGATCTGAGGGGAAAACTGGTAGGGGTAGGAGGCACTCTCTTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

639

Amino Acids

71.68

Weight (kDa)

5.82

Isoelectric Point (pI)

50.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	71 - 153	4e-08	BTB/POZ domain
NPH3	PF03000	238 - 492	4.6e-88	NPH3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08570 AT3G08660 AT3G08660 AT3G08660
fragaria_vesca	FvH4_6g09490 FvH4_6g09490 FvH4_6g09490 FvH4_6g09490
malus_domestica	MD04G1177100.v1.1 MD12G1192300.v1.1
prunus_persica	Prupe.6G296800_v2.0.a1 Prupe.6G296800_v2.0.a1
pyrus_communis	pycom04g15640 pycom12g17930
rosa_chinensis	RchiOBHm_Chr3g0460071
rosa_laevigata	RLG00000025046
rosa_multiflora	Rmu_sc0000449.1_g000056 Rmu_sc0007694.1_g000002
rosa_roxburghii	Rroxscaffold_6G00419870
rosa_rugosa	Rorug03G0039200 Rorug03G0039300
rosa_samantha	Rh3AG097700 Rh3BG100800 Rh3CG102900 Rh3DG102100
rosa_wichuraiana	Rw3G008240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	926
AarI	CACCTGC	1 cut(s)	566
AasI	GACNNNNNNGTC	1 cut(s)	1561
Acc36I	ACCTGC	2 cut(s)	566, 1531
Acc65I	GGTACC	1 cut(s)	1612
AccB1I	GGYRCC	2 cut(s)	958, 1612
AciI	CCGC	4 cut(s)	411, 1162, 1376, 1608
AclWI	GGATC	3 cut(s)	735, 752, 1882
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	4 cut(s)	377, 594, 864, 1818
AcuI	CTGAAG	2 cut(s)	480, 1697
AfaI	GTAC	4 cut(s)	1332, 1398, 1509, 1614
AfiI	CCNNNNNNNGG	1 cut(s)	1229
AflII	CTTAAG	1 cut(s)	695
AjnI	CCWGG	1 cut(s)	343
Alw21I	GWGCWC	1 cut(s)	333
Alw26I	GTCTC	3 cut(s)	273, 713, 1594
AlwI	GGATC	3 cut(s)	735, 752, 1882
Ama87I	CYCGRG	5 cut(s)	710, 1028, 1347, 1635, 1869
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	6 cut(s)	317, 437, 1010, 1484, 1605, 1622
ApoI	RAATTY	4 cut(s)	377, 594, 864, 1818
Asp718I	GGTACC	1 cut(s)	1612
AspS9I	GGNCC	2 cut(s)	350, 1543
AsuC2I	CCSGG	2 cut(s)	1870, 1871
AsuHPI	GGTGA	3 cut(s)	544, 692, 1159
AvaI	CYCGRG	5 cut(s)	710, 1028, 1347, 1635, 1869
AvaII	GGWCC	2 cut(s)	350, 1543
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	2 cut(s)	958, 1612
BanII	GRGCYC	2 cut(s)	110, 333
BbsI	GAAGAC	2 cut(s)	468, 1559
Bbv12I	GWGCWC	1 cut(s)	333
BbvCI	CCTCAGC	2 cut(s)	986, 1298
BbvI	GCAGC	6 cut(s)	304, 424, 997, 1471, 1617, 1634
BccI	CCATC	7 cut(s)	224, 432, 671, 1057, 1355, 1574, 1747
BceAI	ACGGC	1 cut(s)	1268
BciT130I	CCWGG	1 cut(s)	345
BcnI	CCSGG	2 cut(s)	1870, 1871
BcoDI	GTCTC	3 cut(s)	273, 713, 1594
BfaI	CTAG	3 cut(s)	1073, 1271, 1918
BfmI	CTRYAG	4 cut(s)	466, 576, 1021, 1157
BfrI	CTTAAG	1 cut(s)	695
BfuAI	ACCTGC	2 cut(s)	566, 1531
BglII	AGATCT	1 cut(s)	1686
BisI	GCNGC	6 cut(s)	318, 438, 1011, 1485, 1606, 1623
BlpI	GCTNAGC	1 cut(s)	1709
BlsI	GCNGC	6 cut(s)	319, 439, 1012, 1486, 1607, 1624
BmcAI	AGTACT	1 cut(s)	1332
Bme1390I	CCNGG	3 cut(s)	345, 1870, 1871
Bme18I	GGWCC	2 cut(s)	350, 1543
BmeT110I	CYCGRG	5 cut(s)	710, 1028, 1347, 1635, 1869
BmgT120I	GGNCC	2 cut(s)	350, 1543
BmiI	GGNNCC	3 cut(s)	960, 1502, 1614
BmrFI	CCNGG	3 cut(s)	345, 1870, 1871
BmrI	ACTGGG	1 cut(s)	1499
BmsI	GCATC	3 cut(s)	292, 821, 997
BmuI	ACTGGG	1 cut(s)	1499
BpiI	GAAGAC	2 cut(s)	468, 1559
BplI	GAGNNNNNCTC	3 cut(s)	716, 748, 1894
BpmI	CTGGAG	1 cut(s)	1703
Bpu10I	CCTNAGC	4 cut(s)	690, 740, 986, 1298
Bpu1102I	GCTNAGC	1 cut(s)	1709
BpuEI	CTTGAG	4 cut(s)	154, 551, 1449, 1675
BpuMI	CCSGG	2 cut(s)	1870, 1871
Bsa29I	ATCGAT	1 cut(s)	1356
BsaBI	GATNNNNATC	1 cut(s)	995
BsaJI	CCNNGG	5 cut(s)	306, 582, 1228, 1869, 1870
BsaXI	ACNNNNNCTCC	2 cut(s)	556, 586
Bsc4I	CCNNNNNNNGG	1 cut(s)	1229
Bse1I	ACTGG	3 cut(s)	1149, 1505, 1894
Bse3DI	GCAATG	3 cut(s)	378, 734, 1209
Bse8I	GATNNNNATC	1 cut(s)	995
BseBI	CCWGG	1 cut(s)	345
BseCI	ATCGAT	1 cut(s)	1356
BseDI	CCNNGG	5 cut(s)	306, 582, 1228, 1869, 1870
BseGI	GGATG	6 cut(s)	103, 205, 478, 836, 996, 1012
BseJI	GATNNNNATC	1 cut(s)	995
BseLI	CCNNNNNNNGG	1 cut(s)	1229
BseMI	GCAATG	3 cut(s)	378, 734, 1209
BseMII	CTCAG	7 cut(s)	681, 956, 977, 1312, 1587, 1700, 1869
BseNI	ACTGG	3 cut(s)	1149, 1505, 1894
BseRI	GAGGAG	2 cut(s)	599, 1672
BseXI	GCAGC	6 cut(s)	304, 424, 997, 1471, 1617, 1634
BseYI	CCCAGC	1 cut(s)	206
BsgI	GTGCAG	3 cut(s)	1470, 1542, 1641
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	2 cut(s)	958, 1612
BshVI	ATCGAT	1 cut(s)	1356
BsiHKAI	GWGCWC	1 cut(s)	333
BsiHKCI	CYCGRG	5 cut(s)	710, 1028, 1347, 1635, 1869
BsiSI	CCGG	1 cut(s)	1870
BslFI	GGGAC	3 cut(s)	224, 1615, 1852
BslI	CCNNNNNNNGG	1 cut(s)	1229
BsmAI	GTCTC	3 cut(s)	273, 713, 1594
BsmFI	GGGAC	3 cut(s)	224, 1615, 1852
BsmI	GAATGC	2 cut(s)	987, 1427
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	5 cut(s)	710, 1028, 1347, 1635, 1869
Bsp1286I	GDGCHC	2 cut(s)	110, 333
Bsp143I	GATC	7 cut(s)	140, 402, 727, 744, 1495, 1686, 1874
Bsp1720I	GCTNAGC	1 cut(s)	1709
Bsp19I	CCATGG	1 cut(s)	1228
BspACI	CCGC	4 cut(s)	411, 1162, 1376, 1608
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	7 cut(s)	682, 957, 978, 1311, 1586, 1701, 1870
BspDI	ATCGAT	1 cut(s)	1356
BspLI	GGNNCC	3 cut(s)	960, 1502, 1614
BspMAI	CTGCAG	1 cut(s)	1025
BspMI	ACCTGC	2 cut(s)	566, 1531
BspPI	GGATC	3 cut(s)	735, 752, 1882
BspT107I	GGYRCC	2 cut(s)	958, 1612
BspTI	CTTAAG	1 cut(s)	695
BsrDI	GCAATG	3 cut(s)	378, 734, 1209
BsrI	ACTGG	3 cut(s)	1149, 1505, 1894
BssECI	CCNNGG	5 cut(s)	306, 582, 1228, 1869, 1870
BssMI	GATC	7 cut(s)	140, 402, 727, 744, 1495, 1686, 1874
BssT1I	CCWWGG	2 cut(s)	306, 1228
Bst2UI	CCWGG	1 cut(s)	345
Bst4CI	ACNGT	7 cut(s)	1092, 1116, 1132, 1190, 1451, 1519, 1563
BstAFI	CTTAAG	1 cut(s)	695
BstC8I	GCNNGC	4 cut(s)	1021, 1025, 1304, 1474
BstDEI	CTNAG	9 cut(s)	690, 740, 965, 986, 1298, 1573, 1709, 1797, 1878
BstDSI	CCRYGG	1 cut(s)	1228
BstF5I	GGATG	6 cut(s)	103, 205, 478, 836, 996, 1012
BstKTI	GATC	7 cut(s)	143, 405, 730, 747, 1498, 1689, 1877
BstMAI	GTCTC	3 cut(s)	273, 713, 1594
BstMBI	GATC	7 cut(s)	140, 402, 727, 744, 1495, 1686, 1874
BstMWI	GCNNNNNNNGC	3 cut(s)	629, 1016, 1280
BstNI	CCWGG	1 cut(s)	345
BstSCI	CCNGG	3 cut(s)	343, 1868, 1869
BstSFI	CTRYAG	4 cut(s)	466, 576, 1021, 1157
BstV1I	GCAGC	6 cut(s)	304, 424, 997, 1471, 1617, 1634
BstV2I	GAAGAC	2 cut(s)	468, 1559
BstX2I	RGATCY	3 cut(s)	727, 1686, 1874
BstYI	RGATCY	3 cut(s)	727, 1686, 1874
Bsu15I	ATCGAT	1 cut(s)	1356
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	1356
BtgI	CCRYGG	1 cut(s)	1228
BtsCI	GGATG	6 cut(s)	103, 205, 478, 836, 996, 1012
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	6 cut(s)	156, 546, 962, 1112, 1524, 1559
BveI	ACCTGC	2 cut(s)	566, 1531
Cac8I	GCNNGC	4 cut(s)	1021, 1025, 1304, 1474
Cfr13I	GGNCC	2 cut(s)	350, 1543
Cfr9I	CCCGGG	1 cut(s)	1869
ClaI	ATCGAT	1 cut(s)	1356
Csp6I	GTAC	4 cut(s)	1331, 1397, 1508, 1613
CspCI	CAANNNNNGTGG	2 cut(s)	984, 1019
CviQI	GTAC	4 cut(s)	1331, 1397, 1508, 1613
DdeI	CTNAG	9 cut(s)	690, 740, 965, 986, 1298, 1573, 1709, 1797, 1878
DpnI	GATC	7 cut(s)	142, 404, 729, 746, 1497, 1688, 1876
DpnII	GATC	7 cut(s)	140, 402, 727, 744, 1495, 1686, 1874
DrdI	GACNNNNNNGTC	1 cut(s)	1561
DseDI	GACNNNNNNGTC	1 cut(s)	1561
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	331
Eco130I	CCWWGG	2 cut(s)	306, 1228
Eco24I	GRGCYC	2 cut(s)	110, 333
Eco32I	GATATC	1 cut(s)	1081
Eco47I	GGWCC	2 cut(s)	350, 1543
Eco53kI	GAGCTC	1 cut(s)	331
Eco57I	CTGAAG	2 cut(s)	480, 1697
Eco88I	CYCGRG	5 cut(s)	710, 1028, 1347, 1635, 1869
EcoICRI	GAGCTC	1 cut(s)	331
EcoRI	GAATTC	1 cut(s)	594
EcoRII	CCWGG	1 cut(s)	343
EcoRV	GATATC	1 cut(s)	1081
EcoT14I	CCWWGG	2 cut(s)	306, 1228
EcoT22I	ATGCAT	1 cut(s)	825
EcoT38I	GRGCYC	2 cut(s)	110, 333
ErhI	CCWWGG	2 cut(s)	306, 1228
FaqI	GGGAC	3 cut(s)	224, 1615, 1852
FauI	CCCGC	1 cut(s)	1601
Fnu4HI	GCNGC	6 cut(s)	318, 438, 1011, 1485, 1606, 1623
FokI	GGATG	6 cut(s)	110, 212, 485, 823, 1003, 1019
FriOI	GRGCYC	2 cut(s)	110, 333
Fsp4HI	GCNGC	6 cut(s)	318, 438, 1011, 1485, 1606, 1623
FspBI	CTAG	3 cut(s)	1073, 1271, 1918
GluI	GCNGC	6 cut(s)	318, 438, 1011, 1485, 1606, 1623
GsaI	CCCAGC	1 cut(s)	210
GsuI	CTGGAG	1 cut(s)	1703
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	1870
HindIII	AAGCTT	1 cut(s)	928
HinfI	GANTC	8 cut(s)	136, 236, 283, 311, 683, 1199, 1262, 1350
HpaII	CCGG	1 cut(s)	1870
HphI	GGTGA	3 cut(s)	544, 692, 1159
Hpy166II	GTNNAC	4 cut(s)	156, 1112, 1150, 1844
Hpy188I	TCNGA	8 cut(s)	199, 288, 460, 759, 1204, 1224, 1547, 1879
Hpy8I	GTNNAC	4 cut(s)	156, 1112, 1150, 1844
HpyAV	CCTTC	3 cut(s)	250, 1199, 1387
HpyCH4III	ACNGT	7 cut(s)	1092, 1116, 1132, 1190, 1451, 1519, 1563
HpyCH4IV	ACGT	1 cut(s)	213
HpyF10VI	GCNNNNNNNGC	3 cut(s)	629, 1016, 1280
HpyF3I	CTNAG	9 cut(s)	690, 740, 965, 986, 1298, 1573, 1709, 1797, 1878
HpySE526I	ACGT	1 cut(s)	213
KpnI	GGTACC	1 cut(s)	1616
Kzo9I	GATC	7 cut(s)	140, 402, 727, 744, 1495, 1686, 1874
LmnI	GCTCC	4 cut(s)	328, 336, 1288, 1506
Lsp1109I	GCAGC	6 cut(s)	304, 424, 997, 1471, 1617, 1634
LweI	GCATC	3 cut(s)	292, 821, 997
MaeI	CTAG	3 cut(s)	1073, 1271, 1918
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	2 cut(s)	214, 1066
MalI	GATC	7 cut(s)	142, 404, 729, 746, 1497, 1688, 1876
MboI	GATC	7 cut(s)	140, 402, 727, 744, 1495, 1686, 1874
MboII	GAAGA	8 cut(s)	23, 419, 473, 1181, 1184, 1187, 1190, 1564
MfeI	CAATTG	2 cut(s)	644, 1014
MflI	RGATCY	3 cut(s)	727, 1686, 1874
MhlI	GDGCHC	2 cut(s)	110, 333
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	4 cut(s)	145, 1208, 1256, 1359
MmeI	TCCRAC	5 cut(s)	571, 1038, 1182, 1228, 1698
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	825
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	6 cut(s)	81, 668, 696, 818, 842, 932
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	3 cut(s)	317, 1162, 1608
MspCI	CTTAAG	1 cut(s)	695
MspI	CCGG	1 cut(s)	1870
MspR9I	CCNGG	3 cut(s)	345, 1870, 1871
MunI	CAATTG	2 cut(s)	644, 1014
Mva1269I	GAATGC	2 cut(s)	987, 1427
MvaI	CCWGG	1 cut(s)	345
MwoI	GCNNNNNNNGC	3 cut(s)	629, 1016, 1280
NciI	CCSGG	2 cut(s)	1870, 1871
NcoI	CCATGG	1 cut(s)	1228
NdeII	GATC	7 cut(s)	140, 402, 727, 744, 1495, 1686, 1874
NlaIV	GGNNCC	3 cut(s)	960, 1502, 1614
NmeAIII	GCCGAG	1 cut(s)	607
NsiI	ATGCAT	1 cut(s)	825
PaeR7I	CTCGAG	3 cut(s)	710, 1028, 1347
PaqCI	CACCTGC	1 cut(s)	566
PctI	GAATGC	2 cut(s)	987, 1427
PfeI	GAWTC	4 cut(s)	236, 283, 311, 683
PkrI	GCNGC	6 cut(s)	319, 439, 1012, 1486, 1607, 1624
PleI	GAGTC	4 cut(s)	144, 1207, 1256, 1358
PpsI	GAGTC	4 cut(s)	144, 1207, 1256, 1358
PsiI	TTATAA	1 cut(s)	926
Psp124BI	GAGCTC	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	343
PspFI	CCCAGC	1 cut(s)	206
PspGI	CCWGG	1 cut(s)	343
PspN4I	GGNNCC	3 cut(s)	960, 1502, 1614
PspPI	GGNCC	2 cut(s)	350, 1543
PspXI	VCTCGAGB	1 cut(s)	1347
PstI	CTGCAG	1 cut(s)	1025
PsuI	RGATCY	3 cut(s)	727, 1686, 1874
PvuII	CAGCTG	1 cut(s)	317
RsaI	GTAC	4 cut(s)	1332, 1398, 1509, 1614
RsaNI	GTAC	4 cut(s)	1331, 1397, 1508, 1613
SacI	GAGCTC	1 cut(s)	333
SaqAI	TTAA	6 cut(s)	81, 668, 696, 818, 842, 932
SatI	GCNGC	6 cut(s)	318, 438, 1011, 1485, 1606, 1623
Sau3AI	GATC	7 cut(s)	140, 402, 727, 744, 1495, 1686, 1874
Sau96I	GGNCC	2 cut(s)	350, 1543
SbfI	CCTGCAGG	1 cut(s)	1025
ScaI	AGTACT	1 cut(s)	1332
SchI	GAGTC	4 cut(s)	145, 1208, 1256, 1359
ScrFI	CCNGG	3 cut(s)	345, 1870, 1871
SdaI	CCTGCAGG	1 cut(s)	1025
SduI	GDGCHC	2 cut(s)	110, 333
SfaNI	GCATC	3 cut(s)	292, 821, 997
SfcI	CTRYAG	4 cut(s)	466, 576, 1021, 1157
Sfr274I	CTCGAG	3 cut(s)	710, 1028, 1347
SinI	GGWCC	2 cut(s)	350, 1543
SlaI	CTCGAG	3 cut(s)	710, 1028, 1347
SmaI	CCCGGG	1 cut(s)	1871
SmlI	CTYRAG	8 cut(s)	133, 530, 695, 710, 1028, 1347, 1464, 1690
SmoI	CTYRAG	8 cut(s)	133, 530, 695, 710, 1028, 1347, 1464, 1690
Sse8387I	CCTGCAGG	1 cut(s)	1025
SsiI	CCGC	4 cut(s)	411, 1162, 1376, 1608
SspMI	CTAG	3 cut(s)	1073, 1271, 1918
SstI	GAGCTC	1 cut(s)	333
StyD4I	CCNGG	3 cut(s)	343, 1868, 1869
StyI	CCWWGG	2 cut(s)	306, 1228
TaaI	ACNGT	7 cut(s)	1092, 1116, 1132, 1190, 1451, 1519, 1563
TaiI	ACGT	1 cut(s)	216
TatI	WGTACW	2 cut(s)	1330, 1507
TfiI	GAWTC	4 cut(s)	236, 283, 311, 683
Tru1I	TTAA	6 cut(s)	81, 668, 696, 818, 842, 932
Tru9I	TTAA	6 cut(s)	81, 668, 696, 818, 842, 932
TscAI	CASTG	6 cut(s)	163, 546, 969, 1119, 1524, 1566
TseI	GCWGC	6 cut(s)	317, 437, 1010, 1484, 1605, 1622
TspDTI	ATGAA	8 cut(s)	171, 389, 407, 489, 1124, 1224, 1641, 1754
TspMI	CCCGGG	1 cut(s)	1869
TspRI	CASTG	6 cut(s)	163, 546, 969, 1119, 1524, 1566
Vha464I	CTTAAG	1 cut(s)	695
VpaK11BI	GGWCC	2 cut(s)	350, 1543
XapI	RAATTY	4 cut(s)	377, 594, 864, 1818
XcmI	CCANNNNNNNNNTGG	1 cut(s)	118
XhoI	CTCGAG	3 cut(s)	710, 1028, 1347
XmaI	CCCGGG	1 cut(s)	1869
XspI	CTAG	3 cut(s)	1073, 1271, 1918
ZrmI	AGTACT	1 cut(s)	1332
Zsp2I	ATGCAT	1 cut(s)	825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.