Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0006676

Physical Location & Seq

Genomic Coordinates Forward (+)

8178472 .. 8181955

Gene Structure 3484 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG097700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1425 bp

ATGGCCAACATGAGAATTGAGATTTTTTTTCTTCCTCATTTGCAACCTTATTGTCCTTTGCTTGTCGAATTGAATGTTGTTAAATTGATAAACTTGGATGTGGAGAGCCCCAATTCTTTGCTGGTCATATTCTTGAGTCGATCATGCTGGTTGTTCACTGCTATATTGGAGGTTTTATGTTCATGCAGTATCTTTTCGGATGTTGCTGGGGACGTTACAATCCTTGTCGATGGAGAATCCTTCCTACTTCACAAGTTTCCATTGGTGTCTCGAAGTGGAAAGATTCGGAAAATGGTTGCAGATGCCAAGGATTCAGCTGCAAAATTGGAGCTCCACAACATACCAGGAGGACCACAGGCATTTGAACTTGCAATGAAATTTTGTTATGGCATGAACTTTGAGATCACAAGCGGAAATGTTGCCCATCTTCGCTGTGCTGCTGAATACTTGGAAATGTCTGAAGACTATAGGGATGAAAACCTTATTGAGCGAACAGAGATTTACCTGAATGATGTTGTAGTTCAAAGTCTTGAGAAGTCAGTGGAAGTCCTCACCACCTGCCAAACACTACCTCCTATAGCCGAGGAGGTTGGAATTCCAAGCAGATGTGTGGAGGCTATTGCCACCAATGCTTGTAAGGAACAATTGATGTCAGGGTTGTCTATGTTAAATTGTGATGGTGAATCTCCTGAGCTTAAGAGTGGTTGTCTCGAGTGGTGGGTTGAGGATCTCTCATTGCTAAGGATCGAATACTATCAGAGGGTTATTTTTGCCATGCAAAGAACAGGTGTTCGACCAGATAGCATTGTTGCATCTTTAATGCATTTTGCTCAAACATCCTTAAAGGGTATTGGAAAATGTCAAATTTGGAAAAAGCCAGATAGCTTACCAGAACATGACCAAAGGACTATTGTGGAAACCCTTATAAGCTTAATGCCAACAGAGAAAAGCTGTTCGGTGCCACTGAGTTTTATGTTTGGAATGCTGAGGATGTCAATCATGGTGGATGCTGCAATTGCCTGCAGGCTCGAGATTGAAAGGAGGATTGCTTACAGGTTGGAGATGGTTACACTAGATGATATCCTTATACCGTCCATTTATGCAGGGGGTTCACTGTATGATGTTGATACCGTTCATCGAATACTGGTGAACTTCCTACAGCGGATTGAAGAAGAAGAAGATGAGGACTGTGGATATGAGTCGGAAGGCATTGCTAATTCTCCGAGCCATGGTTCATTGTTGAAAGTTGGACGGCTTATTGACTCATATCTAGCTGAAATTGCTCCTGACCCATACCTCAGCTTGCAAAAGTTCGTTGCTATGATTGAAGTACTGCCTGATTATGCTCGAGTCATCGATGATGGACTTTACAGGGCGGTTGATATATATTTGAAGGCAAGTTATCAACATATGTCAATCGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

474

Amino Acids

53.28

Weight (kDa)

4.76

Isoelectric Point (pI)

51.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	71 - 153	2.6e-08	BTB/POZ domain
NPH3	PF03000	238 - 466	8.9e-73	NPH3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08570 AT3G08660 AT3G08660 AT3G08660
fragaria_vesca	FvH4_6g09490 FvH4_6g09490 FvH4_6g09490 FvH4_6g09490
malus_domestica	MD04G1177100.v1.1 MD12G1192300.v1.1
prunus_persica	Prupe.6G296800_v2.0.a1 Prupe.6G296800_v2.0.a1
pyrus_communis	pycom04g15640 pycom12g17930
rosa_chinensis	RchiOBHm_Chr3g0460071
rosa_laevigata	RLG00000025046
rosa_multiflora	Rmu_sc0000449.1_g000056 Rmu_sc0007694.1_g000002
rosa_roxburghii	Rroxscaffold_6G00419870
rosa_rugosa	Rorug03G0039200 Rorug03G0039300
rosa_samantha	Rh3AG097700 Rh3BG100800 Rh3CG102900 Rh3DG102100
rosa_wichuraiana	Rw3G008240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	926
AarI	CACCTGC	1 cut(s)	566
Acc36I	ACCTGC	1 cut(s)	566
AccB1I	GGYRCC	1 cut(s)	958
AciI	CCGC	3 cut(s)	411, 1162, 1376
AclWI	GGATC	2 cut(s)	735, 752
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	3 cut(s)	377, 594, 864
AcuI	CTGAAG	1 cut(s)	480
AfaI	GTAC	1 cut(s)	1332
AfiI	CCNNNNNNNGG	1 cut(s)	1229
AflII	CTTAAG	1 cut(s)	695
AgsI	TTSAA	8 cut(s)	73, 365, 524, 1037, 1169, 1243, 1328, 1393
AjnI	CCWGG	1 cut(s)	343
AluBI	AGCT	8 cut(s)	317, 331, 694, 885, 930, 951, 1274, 1302
AluI	AGCT	8 cut(s)	317, 331, 694, 885, 930, 951, 1274, 1302
Alw21I	GWGCWC	1 cut(s)	333
Alw26I	GTCTC	2 cut(s)	273, 713
AlwI	GGATC	2 cut(s)	735, 752
Ama87I	CYCGRG	3 cut(s)	710, 1028, 1347
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	317, 437, 1010
ApoI	RAATTY	3 cut(s)	377, 594, 864
AspS9I	GGNCC	1 cut(s)	350
AsuHPI	GGTGA	3 cut(s)	544, 692, 1159
AvaI	CYCGRG	3 cut(s)	710, 1028, 1347
AvaII	GGWCC	1 cut(s)	350
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	958
BanII	GRGCYC	2 cut(s)	110, 333
BbsI	GAAGAC	1 cut(s)	468
Bbv12I	GWGCWC	1 cut(s)	333
BbvCI	CCTCAGC	2 cut(s)	986, 1298
BbvI	GCAGC	3 cut(s)	304, 424, 997
BccI	CCATC	5 cut(s)	224, 432, 671, 1057, 1355
BceAI	ACGGC	1 cut(s)	1268
BciT130I	CCWGG	1 cut(s)	345
BcoDI	GTCTC	2 cut(s)	273, 713
BfaI	CTAG	2 cut(s)	1073, 1271
BfmI	CTRYAG	4 cut(s)	466, 576, 1021, 1157
BfrI	CTTAAG	1 cut(s)	695
BfuAI	ACCTGC	1 cut(s)	566
BisI	GCNGC	3 cut(s)	318, 438, 1011
BlsI	GCNGC	3 cut(s)	319, 439, 1012
BmcAI	AGTACT	1 cut(s)	1332
Bme1390I	CCNGG	1 cut(s)	345
Bme18I	GGWCC	1 cut(s)	350
BmeT110I	CYCGRG	3 cut(s)	710, 1028, 1347
BmgT120I	GGNCC	1 cut(s)	350
BmiI	GGNNCC	1 cut(s)	960
BmrFI	CCNGG	1 cut(s)	345
BmsI	GCATC	3 cut(s)	292, 821, 997
BpiI	GAAGAC	1 cut(s)	468
BplI	GAGNNNNNCTC	2 cut(s)	716, 748
Bpu10I	CCTNAGC	4 cut(s)	690, 740, 986, 1298
BpuEI	CTTGAG	2 cut(s)	154, 551
Bsa29I	ATCGAT	1 cut(s)	1356
BsaBI	GATNNNNATC	1 cut(s)	995
BsaJI	CCNNGG	3 cut(s)	306, 582, 1228
BsaXI	ACNNNNNCTCC	2 cut(s)	556, 586
Bsc4I	CCNNNNNNNGG	1 cut(s)	1229
Bse1I	ACTGG	1 cut(s)	1149
Bse3DI	GCAATG	3 cut(s)	378, 734, 1209
Bse8I	GATNNNNATC	1 cut(s)	995
BseBI	CCWGG	1 cut(s)	345
BseCI	ATCGAT	1 cut(s)	1356
BseDI	CCNNGG	3 cut(s)	306, 582, 1228
BseGI	GGATG	6 cut(s)	103, 205, 478, 836, 996, 1012
BseJI	GATNNNNATC	1 cut(s)	995
BseLI	CCNNNNNNNGG	1 cut(s)	1229
BseMI	GCAATG	3 cut(s)	378, 734, 1209
BseMII	CTCAG	4 cut(s)	681, 956, 977, 1312
BseNI	ACTGG	1 cut(s)	1149
BseRI	GAGGAG	1 cut(s)	599
BseXI	GCAGC	3 cut(s)	304, 424, 997
BseYI	CCCAGC	1 cut(s)	206
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	958
BshVI	ATCGAT	1 cut(s)	1356
BsiHKAI	GWGCWC	1 cut(s)	333
BsiHKCI	CYCGRG	3 cut(s)	710, 1028, 1347
BslFI	GGGAC	1 cut(s)	224
BslI	CCNNNNNNNGG	1 cut(s)	1229
BsmAI	GTCTC	2 cut(s)	273, 713
BsmFI	GGGAC	1 cut(s)	224
BsmI	GAATGC	1 cut(s)	987
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	3 cut(s)	710, 1028, 1347
Bsp1286I	GDGCHC	2 cut(s)	110, 333
Bsp143I	GATC	4 cut(s)	140, 402, 727, 744
Bsp19I	CCATGG	1 cut(s)	1228
BspACI	CCGC	3 cut(s)	411, 1162, 1376
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	4 cut(s)	682, 957, 978, 1311
BspDI	ATCGAT	1 cut(s)	1356
BspLI	GGNNCC	1 cut(s)	960
BspMAI	CTGCAG	1 cut(s)	1025
BspMI	ACCTGC	1 cut(s)	566
BspPI	GGATC	2 cut(s)	735, 752
BspT107I	GGYRCC	1 cut(s)	958
BspTI	CTTAAG	1 cut(s)	695
BsrDI	GCAATG	3 cut(s)	378, 734, 1209
BsrI	ACTGG	1 cut(s)	1149
BssECI	CCNNGG	3 cut(s)	306, 582, 1228
BssMI	GATC	4 cut(s)	140, 402, 727, 744
BssT1I	CCWWGG	2 cut(s)	306, 1228
Bst2UI	CCWGG	1 cut(s)	345
Bst4CI	ACNGT	4 cut(s)	1092, 1116, 1132, 1190
BstAFI	CTTAAG	1 cut(s)	695
BstC8I	GCNNGC	3 cut(s)	1021, 1025, 1304
BstDEI	CTNAG	5 cut(s)	690, 740, 965, 986, 1298
BstDSI	CCRYGG	1 cut(s)	1228
BstF5I	GGATG	6 cut(s)	103, 205, 478, 836, 996, 1012
BstKTI	GATC	4 cut(s)	143, 405, 730, 747
BstMAI	GTCTC	2 cut(s)	273, 713
BstMBI	GATC	4 cut(s)	140, 402, 727, 744
BstMWI	GCNNNNNNNGC	3 cut(s)	629, 1016, 1280
BstNI	CCWGG	1 cut(s)	345
BstSCI	CCNGG	1 cut(s)	343
BstSFI	CTRYAG	4 cut(s)	466, 576, 1021, 1157
BstV1I	GCAGC	3 cut(s)	304, 424, 997
BstV2I	GAAGAC	1 cut(s)	468
BstX2I	RGATCY	1 cut(s)	727
BstYI	RGATCY	1 cut(s)	727
Bsu15I	ATCGAT	1 cut(s)	1356
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	1356
BtgI	CCRYGG	1 cut(s)	1228
BtsCI	GGATG	6 cut(s)	103, 205, 478, 836, 996, 1012
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	4 cut(s)	156, 546, 962, 1112
BveI	ACCTGC	1 cut(s)	566
Cac8I	GCNNGC	3 cut(s)	1021, 1025, 1304
Cfr13I	GGNCC	1 cut(s)	350
ClaI	ATCGAT	1 cut(s)	1356
Csp6I	GTAC	1 cut(s)	1331
CspCI	CAANNNNNGTGG	2 cut(s)	984, 1019
CviAII	CATG	8 cut(s)	10, 144, 183, 391, 775, 896, 1000, 1229
CviQI	GTAC	1 cut(s)	1331
DdeI	CTNAG	5 cut(s)	690, 740, 965, 986, 1298
DpnI	GATC	4 cut(s)	142, 404, 729, 746
DpnII	GATC	4 cut(s)	140, 402, 727, 744
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	331
Eco130I	CCWWGG	2 cut(s)	306, 1228
Eco24I	GRGCYC	2 cut(s)	110, 333
Eco32I	GATATC	1 cut(s)	1081
Eco47I	GGWCC	1 cut(s)	350
Eco53kI	GAGCTC	1 cut(s)	331
Eco57I	CTGAAG	1 cut(s)	480
Eco88I	CYCGRG	3 cut(s)	710, 1028, 1347
EcoICRI	GAGCTC	1 cut(s)	331
EcoRI	GAATTC	1 cut(s)	594
EcoRII	CCWGG	1 cut(s)	343
EcoRV	GATATC	1 cut(s)	1081
EcoT14I	CCWWGG	2 cut(s)	306, 1228
EcoT22I	ATGCAT	1 cut(s)	825
EcoT38I	GRGCYC	2 cut(s)	110, 333
ErhI	CCWWGG	2 cut(s)	306, 1228
FaeI	CATG	8 cut(s)	13, 147, 186, 394, 778, 899, 1003, 1232
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	8 cut(s)	9, 143, 182, 390, 774, 895, 999, 1228
FauNDI	CATATG	1 cut(s)	1410
Fnu4HI	GCNGC	3 cut(s)	318, 438, 1011
FokI	GGATG	6 cut(s)	110, 212, 485, 823, 1003, 1019
FriOI	GRGCYC	2 cut(s)	110, 333
Fsp4HI	GCNGC	3 cut(s)	318, 438, 1011
FspBI	CTAG	2 cut(s)	1073, 1271
GluI	GCNGC	3 cut(s)	318, 438, 1011
GsaI	CCCAGC	1 cut(s)	210
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	8 cut(s)	13, 147, 186, 394, 778, 899, 1003, 1232
HindIII	AAGCTT	1 cut(s)	928
HinfI	GANTC	8 cut(s)	136, 236, 283, 311, 683, 1199, 1262, 1350
HphI	GGTGA	3 cut(s)	544, 692, 1159
Hpy166II	GTNNAC	3 cut(s)	156, 1112, 1150
Hpy188I	TCNGA	6 cut(s)	199, 288, 460, 759, 1204, 1224
Hpy188III	TCNNGA	7 cut(s)	133, 270, 530, 689, 710, 1030, 1286
Hpy8I	GTNNAC	3 cut(s)	156, 1112, 1150
HpyAV	CCTTC	3 cut(s)	250, 1199, 1387
HpyCH4III	ACNGT	4 cut(s)	1092, 1116, 1132, 1190
HpyCH4IV	ACGT	1 cut(s)	213
HpyF10VI	GCNNNNNNNGC	3 cut(s)	629, 1016, 1280
HpyF3I	CTNAG	5 cut(s)	690, 740, 965, 986, 1298
HpySE526I	ACGT	1 cut(s)	213
Hsp92II	CATG	8 cut(s)	13, 147, 186, 394, 778, 899, 1003, 1232
Kzo9I	GATC	4 cut(s)	140, 402, 727, 744
LmnI	GCTCC	3 cut(s)	328, 336, 1288
Lsp1109I	GCAGC	3 cut(s)	304, 424, 997
LweI	GCATC	3 cut(s)	292, 821, 997
MaeI	CTAG	2 cut(s)	1073, 1271
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	2 cut(s)	214, 1066
MalI	GATC	4 cut(s)	142, 404, 729, 746
MboI	GATC	4 cut(s)	140, 402, 727, 744
MboII	GAAGA	7 cut(s)	23, 419, 473, 1181, 1184, 1187, 1190
MfeI	CAATTG	2 cut(s)	644, 1014
MflI	RGATCY	1 cut(s)	727
MhlI	GDGCHC	2 cut(s)	110, 333
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	4 cut(s)	145, 1208, 1256, 1359
MmeI	TCCRAC	4 cut(s)	571, 1038, 1182, 1228
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	825
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	6 cut(s)	81, 668, 696, 818, 842, 932
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	317, 1162
MspCI	CTTAAG	1 cut(s)	695
MspR9I	CCNGG	1 cut(s)	345
MunI	CAATTG	2 cut(s)	644, 1014
Mva1269I	GAATGC	1 cut(s)	987
MvaI	CCWGG	1 cut(s)	345
MwoI	GCNNNNNNNGC	3 cut(s)	629, 1016, 1280
NcoI	CCATGG	1 cut(s)	1228
NdeI	CATATG	1 cut(s)	1410
NdeII	GATC	4 cut(s)	140, 402, 727, 744
NlaIII	CATG	8 cut(s)	13, 147, 186, 394, 778, 899, 1003, 1232
NlaIV	GGNNCC	1 cut(s)	960
NmeAIII	GCCGAG	1 cut(s)	607
NsiI	ATGCAT	1 cut(s)	825
PaeR7I	CTCGAG	3 cut(s)	710, 1028, 1347
PaqCI	CACCTGC	1 cut(s)	566
PctI	GAATGC	1 cut(s)	987
PfeI	GAWTC	4 cut(s)	236, 283, 311, 683
PkrI	GCNGC	3 cut(s)	319, 439, 1012
PleI	GAGTC	4 cut(s)	144, 1207, 1256, 1358
PpsI	GAGTC	4 cut(s)	144, 1207, 1256, 1358
PsiI	TTATAA	1 cut(s)	926
Psp124BI	GAGCTC	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	343
PspFI	CCCAGC	1 cut(s)	206
PspGI	CCWGG	1 cut(s)	343
PspN4I	GGNNCC	1 cut(s)	960
PspPI	GGNCC	1 cut(s)	350
PspXI	VCTCGAGB	1 cut(s)	1347
PstI	CTGCAG	1 cut(s)	1025
PsuI	RGATCY	1 cut(s)	727
PvuII	CAGCTG	1 cut(s)	317
RsaI	GTAC	1 cut(s)	1332
RsaNI	GTAC	1 cut(s)	1331
SacI	GAGCTC	1 cut(s)	333
SaqAI	TTAA	6 cut(s)	81, 668, 696, 818, 842, 932
SatI	GCNGC	3 cut(s)	318, 438, 1011
Sau3AI	GATC	4 cut(s)	140, 402, 727, 744
Sau96I	GGNCC	1 cut(s)	350
SbfI	CCTGCAGG	1 cut(s)	1025
ScaI	AGTACT	1 cut(s)	1332
SchI	GAGTC	4 cut(s)	145, 1208, 1256, 1359
ScrFI	CCNGG	1 cut(s)	345
SdaI	CCTGCAGG	1 cut(s)	1025
SduI	GDGCHC	2 cut(s)	110, 333
SfaNI	GCATC	3 cut(s)	292, 821, 997
SfcI	CTRYAG	4 cut(s)	466, 576, 1021, 1157
Sfr274I	CTCGAG	3 cut(s)	710, 1028, 1347
SinI	GGWCC	1 cut(s)	350
SlaI	CTCGAG	3 cut(s)	710, 1028, 1347
SmlI	CTYRAG	6 cut(s)	133, 530, 695, 710, 1028, 1347
SmoI	CTYRAG	6 cut(s)	133, 530, 695, 710, 1028, 1347
Sse8387I	CCTGCAGG	1 cut(s)	1025
SsiI	CCGC	3 cut(s)	411, 1162, 1376
SspMI	CTAG	2 cut(s)	1073, 1271
SstI	GAGCTC	1 cut(s)	333
StyD4I	CCNGG	1 cut(s)	343
StyI	CCWWGG	2 cut(s)	306, 1228
TaaI	ACNGT	4 cut(s)	1092, 1116, 1132, 1190
TaiI	ACGT	1 cut(s)	216
TatI	WGTACW	1 cut(s)	1330
TfiI	GAWTC	4 cut(s)	236, 283, 311, 683
Tru1I	TTAA	6 cut(s)	81, 668, 696, 818, 842, 932
Tru9I	TTAA	6 cut(s)	81, 668, 696, 818, 842, 932
TscAI	CASTG	4 cut(s)	163, 546, 969, 1119
TseI	GCWGC	3 cut(s)	317, 437, 1010
TspDTI	ATGAA	6 cut(s)	171, 389, 407, 489, 1124, 1224
TspRI	CASTG	4 cut(s)	163, 546, 969, 1119
Vha464I	CTTAAG	1 cut(s)	695
VpaK11BI	GGWCC	1 cut(s)	350
XapI	RAATTY	3 cut(s)	377, 594, 864
XcmI	CCANNNNNNNNNTGG	1 cut(s)	118
XhoI	CTCGAG	3 cut(s)	710, 1028, 1347
XspI	CTAG	2 cut(s)	1073, 1271
ZrmI	AGTACT	1 cut(s)	1332
Zsp2I	ATGCAT	1 cut(s)	825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.