Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0006676

Physical Location & Seq

Genomic Coordinates Reverse (-)

27419185 .. 27422403

Gene Structure 3219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1192300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1830 bp

ATGGGGATGGTTTCTGAAAACCCTTTTTCTTTTTCAAACCGCTCTCCAACTCCTAAGCTCTGCAGCTCCTTCACCACTCGTATCTTTTCAGATGTTGCGGGGGACATTACAATCGTTGTCGATGGAGAGTCTTTCTTGCTGCATAAGTTTCCACTGGTGTCGCGAAGTGGAAAGATTCGGAAAATGGTGGCAGATAACAAGGATTCATCTTCAAAATTGGAGCTCCTCAACATACCAGGAGGGGTGCAGGCATTTGAACTCGCAATGAAATTCTGTTATGGCATGAACTTTGAGGTCACAACTGCAAATGTCGCCCATCTGCGGTGTGCTGCAGAGTACTTGGAAATGACTGAAGACTACAGGGACGAAAACCTGATTGCGCGAACGGAAACTTACCTGAACGAGGTTGTAGTTGAGAGTCTTGAAAAGTCAGTAGAAGTCCTCGCCACCTGTGAGACGCTACCTTCTATAGCGGAGGAGGTTGGAATTCCTAGTAGATGTGTGGAAGCTATTGCCATGAATGCTTGCAAGGAACAATTAGCATCAGGGTTGTCAATGTTAAGCTGTGACGGCGAATCTACAGAGCTAAAGAGTGGTCGTCATGAGTGGTGGGTTGAAGATCTGTCGATTCTAAGGATTGATTATTATCAAAGGGTTATATGTGCTATGACAAGACTAGGTGTGCGACCGGATAGCATTTTCACATCTTTGATGCATTTTGCTCAAACATCCTTGAAGGGTATTGGAAAATGTCAAATTTGGAATCCAGGTAGAGTGAGGCCAAATGCTGGCAAGACAGAACATGACCAGAAGACTGTTGTCGAAACCCTAGTAAGCTTAATGCCAACGGAGAAAAGCTCTTCAGTGCCACTGACTTTTATGTTTGGAATGCTGAGAATGGCAATCATGGTGGATGCAACAATAGCCAGCAGGCTTGAGCTTGAGAGGAGGATTGCCTTTCGGTTGGAAATGGTTTCGCTTGATGATCTCCTTATACCCTCGATCCATGCAGGGGGTTCGTTGTATGATGTTGACACCGTTCATCGAATACTGGTGAATTTTTTGCAGCGGATTGAAGAAGAAGATGAAGAAAGTGAAGATTGCGGATATGAGTCTGAAGGACTTGGTTCTCCAAGTCATGGTTCATTGTTGAAAGTTGGAAATCTTATTGACTCATATCTAGCTGAAATTGCTCCTGATCCTTACCTGAGCTTACCAACATTCATTGCTATGATTGAAATACTGCCCGATTATGCACGTGTGATTGATGACGGGATTTACAGGGCCGTTGATATATACTTGAAGGTTCATTCGATGCTGACTGAACAAGAATGCAAGAAGCTGTGCAAATTAATAGATTGCCAAAAGCTCTCTCAAGAAGCCAGCAATCATGCCGCACAAAATGATAGGCTCCCAGTCAAGATGACAGTGCAAGTTCTGTACTTCGAGCAGCTCCGCTTGAAGAATGCATTGTCTGGAAGCTCAGGAGACGGGTTCCCCTCGCAGAGAATAAGCAGTGGCGTCCCAAGCGCAGCCATGTCTCCTCGAGACAACTATGCTTCGTTAAGGAGAGAAAACCGAGAACTGAAGCTGGAGATTTCAAGAATGAGAGTGAGGCTGAGTGAGTTGGAGAAAGAGCAGTTGTTTATGAAACAAGGAATGATGGATAAAACAGGAAATGGGAAAACTTTCCTGACCTCACTCTCTAAAGGGATTGGAAGGATTGGGATTTTTAGTGGCCAAGCGGGAGGGAAACCGAAGAAATCAGGTCGGAAGTCCCGGGGATCTGAGGGGAAAACTGGTAGGAGTAGGAGATATTCCGTTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

610

Amino Acids

67.76

Weight (kDa)

6.05

Isoelectric Point (pI)

44.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	35 - 118	4.4e-08	BTB/POZ domain
NPH3	PF03000	202 - 462	1.8e-86	NPH3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08570 AT3G08660 AT3G08660 AT3G08660
fragaria_vesca	FvH4_6g09490 FvH4_6g09490 FvH4_6g09490 FvH4_6g09490
malus_domestica	MD04G1177100.v1.1 MD12G1192300.v1.1
prunus_persica	Prupe.6G296800_v2.0.a1 Prupe.6G296800_v2.0.a1
pyrus_communis	pycom04g15640 pycom12g17930
rosa_chinensis	RchiOBHm_Chr3g0460071
rosa_laevigata	RLG00000025046
rosa_multiflora	Rmu_sc0000449.1_g000056 Rmu_sc0007694.1_g000002
rosa_roxburghii	Rroxscaffold_6G00419870
rosa_rugosa	Rorug03G0039200 Rorug03G0039300
rosa_samantha	Rh3AG097700 Rh3BG100800 Rh3CG102900 Rh3DG102100
rosa_wichuraiana	Rw3G008240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	788, 1139
AccBSI	CCGCTC	1 cut(s)	42
AccII	CGCG	2 cut(s)	163, 382
AciI	CCGC	9 cut(s)	40, 98, 322, 473, 1069, 1104, 1395, 1456, 1745
AclWI	GGATC	3 cut(s)	997, 1193, 1792
AcoI	YGGCCR	1 cut(s)	1738
AcsI	RAATTY	4 cut(s)	269, 486, 756, 1057
AcuI	CTGAAG	4 cut(s)	372, 846, 1137, 1607
AcvI	CACGTG	1 cut(s)	1259
AcyI	GRCGYC	1 cut(s)	1521
AfaI	GTAC	2 cut(s)	338, 1442
AfiI	CCNNNNNNNGG	5 cut(s)	321, 403, 788, 1012, 1139
AflIII	ACRYGT	1 cut(s)	1258
AjnI	CCWGG	2 cut(s)	235, 766
AjuI	GAANNNNNNNTTGG	2 cut(s)	1126, 1158
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	4 cut(s)	449, 1482, 1542, 1545
AlwI	GGATC	3 cut(s)	997, 1193, 1792
Ama87I	CYCGRG	2 cut(s)	1545, 1779
AoxI	GGCC	3 cut(s)	779, 1284, 1738
ApeKI	GCWGC	6 cut(s)	63, 139, 329, 1066, 1450, 1532
ApoI	RAATTY	4 cut(s)	269, 486, 756, 1057
AseI	ATTAAT	1 cut(s)	1352
Asp700I	GAANNNNTTC	1 cut(s)	1688
AspLEI	GCGC	2 cut(s)	382, 1532
AspS9I	GGNCC	1 cut(s)	1284
AsuC2I	CCSGG	2 cut(s)	1780, 1781
AsuHPI	GGTGA	2 cut(s)	64, 1066
AvaI	CYCGRG	2 cut(s)	1545, 1779
BalI	TGGCCA	1 cut(s)	1740
BanII	GRGCYC	1 cut(s)	225
BbrPI	CACGTG	1 cut(s)	1259
BbsI	GAAGAC	2 cut(s)	360, 818
Bbv12I	GWGCWC	1 cut(s)	225
BbvI	GCAGC	6 cut(s)	75, 126, 316, 1078, 1462, 1544
BccI	CCATC	3 cut(s)	116, 324, 1657
BceAI	ACGGC	2 cut(s)	586, 1271
BcgI	CGANNNNNNTGC	2 cut(s)	999, 1033
BciT130I	CCWGG	2 cut(s)	237, 768
BcnI	CCSGG	2 cut(s)	1780, 1781
BcoDI	GTCTC	4 cut(s)	449, 1482, 1542, 1545
BfaI	CTAG	5 cut(s)	492, 677, 830, 1181, 1828
BfmI	CTRYAG	5 cut(s)	61, 330, 358, 468, 579
BglII	AGATCT	1 cut(s)	619
BisI	GCNGC	7 cut(s)	64, 140, 330, 1067, 1395, 1451, 1533
BlsI	GCNGC	7 cut(s)	65, 141, 331, 1068, 1396, 1452, 1534
BmcAI	AGTACT	1 cut(s)	338
Bme1390I	CCNGG	4 cut(s)	237, 768, 1780, 1781
BmeT110I	CYCGRG	2 cut(s)	1545, 1779
BmgT120I	GGNCC	1 cut(s)	1284
BmiI	GGNNCC	2 cut(s)	1412, 1496
BmrFI	CCNGG	4 cut(s)	237, 768, 1780, 1781
BmrI	ACTGGG	1 cut(s)	1409
BmsI	GCATC	4 cut(s)	551, 702, 904, 1305
BmuI	ACTGGG	1 cut(s)	1409
BoxI	GACNNNNGTC	1 cut(s)	818
BpiI	GAAGAC	2 cut(s)	360, 818
BplI	GAGNNNNNCTC	2 cut(s)	842, 874
BpmI	CTGGAG	1 cut(s)	1613
Bpu10I	CCTNAGC	3 cut(s)	54, 1208, 1483
BpuEI	CTTGAG	3 cut(s)	956, 962, 1359
BpuMI	CCSGG	2 cut(s)	1780, 1781
BsaAI	YACGTR	1 cut(s)	1259
BsaBI	GATNNNNATC	1 cut(s)	645
BsaHI	GRCGYC	1 cut(s)	1521
BsaJI	CCNNGG	2 cut(s)	1779, 1780
BsaWI	WCCGGW	1 cut(s)	688
Bsc4I	CCNNNNNNNGG	5 cut(s)	321, 403, 788, 1012, 1139
Bse1I	ACTGG	4 cut(s)	159, 1056, 1415, 1804
Bse3DI	GCAATG	2 cut(s)	270, 1224
Bse8I	GATNNNNATC	1 cut(s)	645
BseBI	CCWGG	2 cut(s)	237, 768
BseDI	CCNNGG	2 cut(s)	1779, 1780
BseGI	GGATG	3 cut(s)	12, 728, 919
BseJI	GATNNNNATC	1 cut(s)	645
BseLI	CCNNNNNNNGG	5 cut(s)	321, 403, 788, 1012, 1139
BseMI	GCAATG	2 cut(s)	270, 1224
BseMII	CTCAG	5 cut(s)	884, 1199, 1497, 1610, 1779
BseNI	ACTGG	4 cut(s)	159, 1056, 1415, 1804
BseRI	GAGGAG	4 cut(s)	215, 491, 961, 1533
BseXI	GCAGC	6 cut(s)	75, 126, 316, 1078, 1462, 1544
BsgI	GTGCAG	1 cut(s)	266
Bsh1236I	CGCG	2 cut(s)	163, 382
Bsh1285I	CGRYCG	1 cut(s)	689
BshFI	GGCC	3 cut(s)	781, 1286, 1740
BsiEI	CGRYCG	1 cut(s)	689
BsiHKAI	GWGCWC	1 cut(s)	225
BsiHKCI	CYCGRG	2 cut(s)	1545, 1779
BsiSI	CCGG	2 cut(s)	689, 1780
BslFI	GGGAC	4 cut(s)	116, 377, 1508, 1762
BslI	CCNNNNNNNGG	5 cut(s)	321, 403, 788, 1012, 1139
BsmAI	GTCTC	4 cut(s)	449, 1482, 1542, 1545
BsmBI	CGTCTC	2 cut(s)	449, 1482
BsmFI	GGGAC	4 cut(s)	116, 377, 1508, 1762
BsmI	GAATGC	4 cut(s)	526, 894, 1337, 1471
BsnI	GGCC	3 cut(s)	781, 1286, 1740
BsoBI	CYCGRG	2 cut(s)	1545, 1779
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp143I	GATC	5 cut(s)	619, 985, 1002, 1198, 1784
Bsp68I	TCGCGA	1 cut(s)	163
BspACI	CCGC	9 cut(s)	40, 98, 322, 473, 1069, 1104, 1395, 1456, 1745
BspANI	GGCC	3 cut(s)	781, 1286, 1740
BspCNI	CTCAG	5 cut(s)	885, 1200, 1496, 1611, 1780
BspFNI	CGCG	2 cut(s)	163, 382
BspHI	TCATGA	1 cut(s)	601
BspLI	GGNNCC	2 cut(s)	1412, 1496
BspMAI	CTGCAG	2 cut(s)	65, 334
BspPI	GGATC	3 cut(s)	997, 1193, 1792
BspQI	GCTCTTC	1 cut(s)	865
BsrBI	CCGCTC	1 cut(s)	42
BsrDI	GCAATG	2 cut(s)	270, 1224
BsrI	ACTGG	4 cut(s)	159, 1056, 1415, 1804
BssECI	CCNNGG	2 cut(s)	1779, 1780
BssMI	GATC	5 cut(s)	619, 985, 1002, 1198, 1784
BssNI	GRCGYC	1 cut(s)	1521
Bst2UI	CCWGG	2 cut(s)	237, 768
Bst4CI	ACNGT	3 cut(s)	817, 1039, 1429
Bst6I	CTCTTC	1 cut(s)	865
BstACI	GRCGYC	1 cut(s)	1521
BstBAI	YACGTR	1 cut(s)	1259
BstC8I	GCNNGC	6 cut(s)	249, 526, 790, 928, 932, 1384
BstDEI	CTNAG	7 cut(s)	54, 632, 893, 1208, 1483, 1619, 1788
BstENI	CCTNNNNNAGG	1 cut(s)	401
BstF5I	GGATG	3 cut(s)	12, 728, 919
BstFNI	CGCG	2 cut(s)	163, 382
BstHHI	GCGC	2 cut(s)	382, 1532
BstKTI	GATC	5 cut(s)	622, 988, 1005, 1201, 1787
BstMAI	GTCTC	4 cut(s)	449, 1482, 1542, 1545
BstMBI	GATC	5 cut(s)	619, 985, 1002, 1198, 1784
BstMCI	CGRYCG	1 cut(s)	689
BstMWI	GCNNNNNNNGC	6 cut(s)	311, 521, 570, 923, 1190, 1527
BstNI	CCWGG	2 cut(s)	237, 768
BstPAI	GACNNNNGTC	1 cut(s)	818
BstSCI	CCNGG	4 cut(s)	235, 766, 1778, 1779
BstSFI	CTRYAG	5 cut(s)	61, 330, 358, 468, 579
BstUI	CGCG	2 cut(s)	163, 382
BstV1I	GCAGC	6 cut(s)	75, 126, 316, 1078, 1462, 1544
BstV2I	GAAGAC	2 cut(s)	360, 818
BstX2I	RGATCY	2 cut(s)	619, 1784
BstYI	RGATCY	2 cut(s)	619, 1784
BsuRI	GGCC	3 cut(s)	781, 1286, 1740
BtsCI	GGATG	3 cut(s)	12, 728, 919
BtsI	GCAGTG	1 cut(s)	1522
BtsIMutI	CAGTG	5 cut(s)	152, 869, 870, 1434, 1522
BtuMI	TCGCGA	1 cut(s)	163
Cac8I	GCNNGC	6 cut(s)	249, 526, 790, 928, 932, 1384
CciI	TCATGA	1 cut(s)	601
CfoI	GCGC	2 cut(s)	382, 1532
Cfr13I	GGNCC	1 cut(s)	1284
Cfr9I	CCCGGG	1 cut(s)	1779
CseI	GACGC	2 cut(s)	466, 1510
Csp6I	GTAC	2 cut(s)	337, 1441
CspCI	CAANNNNNGTGG	2 cut(s)	891, 926
CviAII	CATG	9 cut(s)	283, 517, 602, 803, 907, 1007, 1139, 1391, 1537
CviQI	GTAC	2 cut(s)	337, 1441
DdeI	CTNAG	7 cut(s)	54, 632, 893, 1208, 1483, 1619, 1788
DpnI	GATC	5 cut(s)	621, 987, 1004, 1200, 1786
DpnII	GATC	5 cut(s)	619, 985, 1002, 1198, 1784
EaeI	YGGCCR	1 cut(s)	1738
Eam1104I	CTCTTC	1 cut(s)	865
EarI	CTCTTC	1 cut(s)	865
Ecl136II	GAGCTC	1 cut(s)	223
Eco24I	GRGCYC	1 cut(s)	225
Eco53kI	GAGCTC	1 cut(s)	223
Eco57I	CTGAAG	4 cut(s)	372, 846, 1137, 1607
Eco72I	CACGTG	1 cut(s)	1259
Eco88I	CYCGRG	2 cut(s)	1545, 1779
EcoICRI	GAGCTC	1 cut(s)	223
EcoNI	CCTNNNNNAGG	1 cut(s)	401
EcoRI	GAATTC	1 cut(s)	486
EcoRII	CCWGG	2 cut(s)	235, 766
EcoT22I	ATGCAT	2 cut(s)	717, 1471
EcoT38I	GRGCYC	1 cut(s)	225
Esp3I	CGTCTC	2 cut(s)	449, 1482
FaeI	CATG	9 cut(s)	286, 520, 605, 806, 910, 1010, 1142, 1394, 1540
FaqI	GGGAC	4 cut(s)	116, 377, 1508, 1762
FatI	CATG	9 cut(s)	282, 516, 601, 802, 906, 1006, 1138, 1390, 1536
FauI	CCCGC	2 cut(s)	91, 1738
Fnu4HI	GCNGC	7 cut(s)	64, 140, 330, 1067, 1395, 1451, 1533
FokI	GGATG	3 cut(s)	19, 715, 926
FriOI	GRGCYC	1 cut(s)	225
Fsp4HI	GCNGC	7 cut(s)	64, 140, 330, 1067, 1395, 1451, 1533
FspBI	CTAG	5 cut(s)	492, 677, 830, 1181, 1828
GlaI	GCGC	2 cut(s)	381, 1531
GluI	GCNGC	7 cut(s)	64, 140, 330, 1067, 1395, 1451, 1533
GsuI	CTGGAG	1 cut(s)	1613
HaeIII	GGCC	3 cut(s)	781, 1286, 1740
HapII	CCGG	2 cut(s)	689, 1780
HgaI	GACGC	2 cut(s)	466, 1510
HhaI	GCGC	2 cut(s)	382, 1532
Hin1I	GRCGYC	1 cut(s)	1521
Hin1II	CATG	9 cut(s)	286, 520, 605, 806, 910, 1010, 1142, 1394, 1540
Hin6I	GCGC	2 cut(s)	380, 1530
HinP1I	GCGC	2 cut(s)	380, 1530
HincII	GTYRAC	1 cut(s)	1033
HindII	GTYRAC	1 cut(s)	1033
HindIII	AAGCTT	1 cut(s)	835
HinfI	GANTC	9 cut(s)	128, 175, 203, 418, 575, 628, 763, 1112, 1172
HpaII	CCGG	2 cut(s)	689, 1780
HphI	GGTGA	2 cut(s)	64, 1066
Hpy166II	GTNNAC	1 cut(s)	1033
Hpy188I	TCNGA	6 cut(s)	16, 91, 180, 1117, 1773, 1789
Hpy8I	GTNNAC	1 cut(s)	1033
HpyAV	CCTTC	6 cut(s)	79, 474, 730, 1112, 1297, 1713
HpyCH4III	ACNGT	3 cut(s)	817, 1039, 1429
HpyCH4IV	ACGT	1 cut(s)	1258
HpyF10VI	GCNNNNNNNGC	6 cut(s)	311, 521, 570, 923, 1190, 1527
HpyF3I	CTNAG	7 cut(s)	54, 632, 893, 1208, 1483, 1619, 1788
HpySE526I	ACGT	1 cut(s)	1258
Hsp92I	GRCGYC	1 cut(s)	1521
Hsp92II	CATG	9 cut(s)	286, 520, 605, 806, 910, 1010, 1142, 1394, 1540
HspAI	GCGC	2 cut(s)	380, 1530
Kzo9I	GATC	5 cut(s)	619, 985, 1002, 1198, 1784
LguI	GCTCTTC	1 cut(s)	865
LmnI	GCTCC	6 cut(s)	71, 220, 228, 1198, 1416, 1458
Lsp1109I	GCAGC	6 cut(s)	75, 126, 316, 1078, 1462, 1544
LweI	GCATC	4 cut(s)	551, 702, 904, 1305
MaeI	CTAG	5 cut(s)	492, 677, 830, 1181, 1828
MaeII	ACGT	1 cut(s)	1258
MaeIII	GTNAC	2 cut(s)	295, 566
MalI	GATC	5 cut(s)	621, 987, 1004, 1200, 1786
MbiI	CCGCTC	1 cut(s)	42
MboI	GATC	5 cut(s)	619, 985, 1002, 1198, 1784
MflI	RGATCY	2 cut(s)	619, 1784
MhlI	GDGCHC	1 cut(s)	225
MlsI	TGGCCA	1 cut(s)	1740
MluCI	AATT	8 cut(s)	215, 269, 486, 536, 756, 1057, 1188, 1349
MluNI	TGGCCA	1 cut(s)	1740
MlyI	GAGTC	4 cut(s)	137, 427, 1121, 1166
MmeI	TCCRAC	6 cut(s)	71, 463, 945, 1138, 1608, 1751
Mox20I	TGGCCA	1 cut(s)	1740
Mph1103I	ATGCAT	2 cut(s)	717, 1471
MroXI	GAANNNNTTC	1 cut(s)	1688
MscI	TGGCCA	1 cut(s)	1740
MseI	TTAA	4 cut(s)	560, 839, 1352, 1565
MslI	CAYNNNNRTG	1 cut(s)	1229
Msp20I	TGGCCA	1 cut(s)	1740
MspA1I	CMGCKG	1 cut(s)	1069
MspI	CCGG	2 cut(s)	689, 1780
MspR9I	CCNGG	4 cut(s)	237, 768, 1780, 1781
Mva1269I	GAATGC	4 cut(s)	526, 894, 1337, 1471
MvaI	CCWGG	2 cut(s)	237, 768
MvnI	CGCG	2 cut(s)	163, 382
MwoI	GCNNNNNNNGC	6 cut(s)	311, 521, 570, 923, 1190, 1527
NciI	CCSGG	2 cut(s)	1780, 1781
NdeII	GATC	5 cut(s)	619, 985, 1002, 1198, 1784
NlaIII	CATG	9 cut(s)	286, 520, 605, 806, 910, 1010, 1142, 1394, 1540
NlaIV	GGNNCC	2 cut(s)	1412, 1496
NmuCI	GTSAC	2 cut(s)	295, 566
NruI	TCGCGA	1 cut(s)	163
NsiI	ATGCAT	2 cut(s)	717, 1471
PaeR7I	CTCGAG	1 cut(s)	1545
PagI	TCATGA	1 cut(s)	601
PciSI	GCTCTTC	1 cut(s)	865
PctI	GAATGC	4 cut(s)	526, 894, 1337, 1471
PdmI	GAANNNNTTC	1 cut(s)	1688
PfeI	GAWTC	5 cut(s)	175, 203, 575, 628, 763
PflMI	CCANNNNNTGG	2 cut(s)	788, 1139
PkrI	GCNGC	7 cut(s)	65, 141, 331, 1068, 1396, 1452, 1534
PleI	GAGTC	4 cut(s)	136, 426, 1120, 1166
PmaCI	CACGTG	1 cut(s)	1259
PmlI	CACGTG	1 cut(s)	1259
PpsI	GAGTC	4 cut(s)	136, 426, 1120, 1166
Ppu21I	YACGTR	1 cut(s)	1259
PshAI	GACNNNNGTC	1 cut(s)	818
PshBI	ATTAAT	1 cut(s)	1352
Psp124BI	GAGCTC	1 cut(s)	225
Psp6I	CCWGG	2 cut(s)	235, 766
PspCI	CACGTG	1 cut(s)	1259
PspGI	CCWGG	2 cut(s)	235, 766
PspN4I	GGNNCC	2 cut(s)	1412, 1496
PspPI	GGNCC	1 cut(s)	1284
PstI	CTGCAG	2 cut(s)	65, 334
PsuI	RGATCY	2 cut(s)	619, 1784
RruI	TCGCGA	1 cut(s)	163
RsaI	GTAC	2 cut(s)	338, 1442
RsaNI	GTAC	2 cut(s)	337, 1441
RseI	CAYNNNNRTG	1 cut(s)	1229
SacI	GAGCTC	1 cut(s)	225
SapI	GCTCTTC	1 cut(s)	865
SaqAI	TTAA	4 cut(s)	560, 839, 1352, 1565
SatI	GCNGC	7 cut(s)	64, 140, 330, 1067, 1395, 1451, 1533
Sau3AI	GATC	5 cut(s)	619, 985, 1002, 1198, 1784
Sau96I	GGNCC	1 cut(s)	1284
ScaI	AGTACT	1 cut(s)	338
SchI	GAGTC	4 cut(s)	137, 427, 1121, 1166
ScrFI	CCNGG	4 cut(s)	237, 768, 1780, 1781
SduI	GDGCHC	1 cut(s)	225
SfaNI	GCATC	4 cut(s)	551, 702, 904, 1305
SfcI	CTRYAG	5 cut(s)	61, 330, 358, 468, 579
Sfr274I	CTCGAG	1 cut(s)	1545
SlaI	CTCGAG	1 cut(s)	1545
SmaI	CCCGGG	1 cut(s)	1781
SmiMI	CAYNNNNRTG	1 cut(s)	1229
SmlI	CTYRAG	4 cut(s)	935, 941, 1374, 1545
SmoI	CTYRAG	4 cut(s)	935, 941, 1374, 1545
Sse9I	AATT	8 cut(s)	215, 269, 486, 536, 756, 1057, 1188, 1349
SsiI	CCGC	9 cut(s)	40, 98, 322, 473, 1069, 1104, 1395, 1456, 1745
SspMI	CTAG	5 cut(s)	492, 677, 830, 1181, 1828
SstI	GAGCTC	1 cut(s)	225
StyD4I	CCNGG	4 cut(s)	235, 766, 1778, 1779
TaaI	ACNGT	3 cut(s)	817, 1039, 1429
TaiI	ACGT	1 cut(s)	1261
TaqI	TCGA	8 cut(s)	120, 626, 822, 1001, 1045, 1313, 1446, 1546
TasI	AATT	8 cut(s)	215, 269, 486, 536, 756, 1057, 1188, 1349
TatI	WGTACW	2 cut(s)	336, 1440
TauI	GCSGC	1 cut(s)	1397
TfiI	GAWTC	5 cut(s)	175, 203, 575, 628, 763
Tru1I	TTAA	4 cut(s)	560, 839, 1352, 1565
Tru9I	TTAA	4 cut(s)	560, 839, 1352, 1565
TscAI	CASTG	5 cut(s)	159, 870, 876, 1434, 1522
TseFI	GTSAC	2 cut(s)	295, 566
TseI	GCWGC	6 cut(s)	63, 139, 329, 1066, 1450, 1532
Tsp45I	GTSAC	2 cut(s)	295, 566
TspGWI	ACGGA	3 cut(s)	401, 863, 1810
TspMI	CCCGGG	1 cut(s)	1779
TspRI	CASTG	5 cut(s)	159, 870, 876, 1434, 1522
Van91I	CCANNNNNTGG	2 cut(s)	788, 1139
VspI	ATTAAT	1 cut(s)	1352
XagI	CCTNNNNNAGG	1 cut(s)	401
XapI	RAATTY	4 cut(s)	269, 486, 756, 1057
XhoI	CTCGAG	1 cut(s)	1545
XmaI	CCCGGG	1 cut(s)	1779
XmnI	GAANNNNTTC	1 cut(s)	1688
XspI	CTAG	5 cut(s)	492, 677, 830, 1181, 1828
ZrmI	AGTACT	1 cut(s)	338
Zsp2I	ATGCAT	2 cut(s)	717, 1471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.