Rroxscaffold_6G00419870

Belongs to the NPH3 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
41236030 .. 41239366
3337 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00419870.1

Sequence Viewer

Length: 1368 bp
ATGCCAATGCAGTCGACCAATTACGTTGTCAACAAGAAATACTACCTAACGAGGGGCCATGCTGTTGCTAGGCAATGGCTACTCGAGCACCGGAGTGAGCAACAATGTCTCAAATCTGTGGGCAAAAAGAATATCTTTTCGGATGTTGCTGGGGACATTACAATCGTTGTCGATGGAGAATCCTTCTTACTTCACAAGTTTCCATTGGTGTCTCGAAGTGGAAAGATTCGGAAAATGGTTGCAGATGCCAAGGATTCAACTGCAAAATTGGAGCTCCACAACATACCTGGAGGGCCACAGGCATTTGAGCTAGCAATGAAATTTTGTTATGGCATGAACTTTGAGATCACAAGCGGAAATGTTGCCCATCTTCGCTGCGCTGCTGAATACTTGGAAATGTCTGAAGACTATAGGGATGAAAACCTTATTGAGCGAACGGAGATTTACCTGAATGAGGTTGTAGTTCAAAGTCTTGAGAAGTCAGTGGAAGTCCTCACCACCTGCCAGACACTACCTCCTATTGCCGAGGAGGTTGGAATCCCAAGCAGATGTGTGGAGGCTATTGCCACCAATGCTTGTAAGGAACAATTGATGTCAGGGTTGTCCATGTTAAATTGTGATGGTGAATCTCCTGAGCTTAAGAGTGGTTGTCTCGAGTGGTGGGTTGAAGATCTGTCATTGCTAAGGATCGAATACTATCAGAGGGTTATTTTTGCCATGCAAAGAACAGGTGTTCGACCAGATAGCATTGTTGCATCTTTAATGCATTTTGCTCAAACATCCCTAAAGGGTATTGGAAAATGTCAAATTTGGAAAAAGCCAGATAGCTTACCAGAGCATGACCAAAGGACTATTGTAGAAACCCTTATAAGCCTAATGCCAACAGAGAAAAGCTGTTCGGTGCCACTGAGTTTTATGTTTGGAATGCTGAGGATGTCAATCATGGTGGATGCTGCAATTGCCTGCAGGCTCGAGATTGAAAGGAGGATTGCTTACAGGTTGGAGATGGTTACACTAGATGATATCCTTATACCGTCCATTTATGCAGGGGGTTCACTGTATGATGTTGATACCGTTCATCGAATACTGGTGAACTTCCTACAGCGGATTGAAGAAGAAGAAGATGAAGACTGTGGATATGAGTCGGAAGGCATTGCTAATTCTCCGAGCCATGGTTCATTGTTGAAAGTTGGACGGCTTATTGACTCATATCTAGCTGAAATTGCTCCCGACCCATACCTTAGCTTGCAAAAGTTCGTTGCTATGATTGAAGTACTGCCTGATTATGCTCGAGTCATCGATGATGGACTTTACAGGGCGGTTGATATATATTTGAAGGCAAGTTATCAACATATATCAATCGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

455

Amino Acids

51.32

Weight (kDa)

5.1

Isoelectric Point (pI)

49.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB PF00651 52 - 135 1.8e-08 BTB/POZ domain
NPH3 PF03000 219 - 447 8.9e-73 NPH3 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 869
AarI CACCTGC 1 cut(s) 509
Acc36I ACCTGC 1 cut(s) 509
AccB1I GGYRCC 1 cut(s) 901
AccI GTMKAC 1 cut(s) 14
AciI CCGC 3 cut(s) 354, 1105, 1319
AclWI GGATC 1 cut(s) 695
AcsI RAATTY 2 cut(s) 320, 807
AcuI CTGAAG 1 cut(s) 423
AfaI GTAC 1 cut(s) 1275
AfiI CCNNNNNNNGG 3 cut(s) 52, 454, 1172
AflII CTTAAG 1 cut(s) 638
AgsI TTSAA 8 cut(s) 258, 467, 668, 980, 1112, 1186, 1271, 1336
AjnI CCWGG 1 cut(s) 286
AleI CACNNNNGTG 1 cut(s) 93
AluBI AGCT 7 cut(s) 274, 310, 637, 828, 894, 1217, 1245
AluI AGCT 7 cut(s) 274, 310, 637, 828, 894, 1217, 1245
Alw21I GWGCWC 2 cut(s) 90, 276
Alw26I GTCTC 3 cut(s) 113, 216, 656
AlwI GGATC 1 cut(s) 695
Ama87I CYCGRG 4 cut(s) 83, 653, 971, 1290
AoxI GGCC 2 cut(s) 55, 293
ApeKI GCWGC 3 cut(s) 375, 380, 953
ApoI RAATTY 2 cut(s) 320, 807
AspLEI GCGC 1 cut(s) 380
AspS9I GGNCC 2 cut(s) 55, 293
AsuHPI GGTGA 3 cut(s) 487, 635, 1102
AsuNHI GCTAGC 1 cut(s) 310
AvaI CYCGRG 4 cut(s) 83, 653, 971, 1290
BanI GGYRCC 1 cut(s) 901
BanII GRGCYC 1 cut(s) 276
BbsI GAAGAC 2 cut(s) 411, 1134
Bbv12I GWGCWC 2 cut(s) 90, 276
BbvCI CCTCAGC 1 cut(s) 929
BbvI GCAGC 3 cut(s) 362, 367, 940
BccI CCATC 5 cut(s) 167, 375, 614, 1000, 1298
BceAI ACGGC 1 cut(s) 1211
BciT130I CCWGG 1 cut(s) 288
BcoDI GTCTC 3 cut(s) 113, 216, 656
BfaI CTAG 4 cut(s) 69, 311, 1016, 1214
BfmI CTRYAG 3 cut(s) 409, 964, 1100
BfrI CTTAAG 1 cut(s) 638
BfuAI ACCTGC 1 cut(s) 509
BglII AGATCT 1 cut(s) 670
BisI GCNGC 3 cut(s) 376, 381, 954
BlsI GCNGC 3 cut(s) 377, 382, 955
BmcAI AGTACT 1 cut(s) 1275
Bme1390I CCNGG 1 cut(s) 288
BmeT110I CYCGRG 4 cut(s) 83, 653, 971, 1290
BmgT120I GGNCC 2 cut(s) 55, 293
BmiI GGNNCC 2 cut(s) 56, 903
BmrFI CCNGG 1 cut(s) 288
BmsI GCATC 3 cut(s) 235, 764, 940
BmtI GCTAGC 1 cut(s) 314
BpiI GAAGAC 2 cut(s) 411, 1134
BpmI CTGGAG 1 cut(s) 309
Bpu10I CCTNAGC 4 cut(s) 633, 683, 929, 1241
BpuEI CTTGAG 1 cut(s) 494
Bsa29I ATCGAT 1 cut(s) 1299
BsaBI GATNNNNATC 1 cut(s) 938
BsaJI CCNNGG 3 cut(s) 249, 525, 1171
BsaWI WCCGGW 1 cut(s) 90
BsaXI ACNNNNNCTCC 2 cut(s) 499, 529
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 454, 1172
Bse1I ACTGG 1 cut(s) 1092
Bse3DI GCAATG 4 cut(s) 80, 321, 677, 1152
Bse8I GATNNNNATC 1 cut(s) 938
BseBI CCWGG 1 cut(s) 288
BseCI ATCGAT 1 cut(s) 1299
BseDI CCNNGG 3 cut(s) 249, 525, 1171
BseGI GGATG 5 cut(s) 148, 421, 779, 939, 955
BseJI GATNNNNATC 1 cut(s) 938
BseLI CCNNNNNNNGG 3 cut(s) 52, 454, 1172
BseMI GCAATG 4 cut(s) 80, 321, 677, 1152
BseMII CTCAG 3 cut(s) 624, 899, 920
BseNI ACTGG 1 cut(s) 1092
BseRI GAGGAG 1 cut(s) 542
BseXI GCAGC 3 cut(s) 362, 367, 940
BseYI CCCAGC 1 cut(s) 149
BshFI GGCC 2 cut(s) 57, 295
BshNI GGYRCC 1 cut(s) 901
BshVI ATCGAT 1 cut(s) 1299
BsiHKAI GWGCWC 2 cut(s) 90, 276
BsiHKCI CYCGRG 4 cut(s) 83, 653, 971, 1290
BsiSI CCGG 1 cut(s) 91
BslFI GGGAC 1 cut(s) 167
BslI CCNNNNNNNGG 3 cut(s) 52, 454, 1172
BsmAI GTCTC 3 cut(s) 113, 216, 656
BsmFI GGGAC 1 cut(s) 167
BsmI GAATGC 1 cut(s) 930
BsnI GGCC 2 cut(s) 57, 295
BsoBI CYCGRG 4 cut(s) 83, 653, 971, 1290
Bsp1286I GDGCHC 2 cut(s) 90, 276
Bsp143I GATC 3 cut(s) 345, 670, 687
Bsp19I CCATGG 1 cut(s) 1171
BspACI CCGC 3 cut(s) 354, 1105, 1319
BspANI GGCC 2 cut(s) 57, 295
BspCNI CTCAG 3 cut(s) 625, 900, 921
BspDI ATCGAT 1 cut(s) 1299
BspLI GGNNCC 2 cut(s) 56, 903
BspMAI CTGCAG 1 cut(s) 968
BspMI ACCTGC 1 cut(s) 509
BspOI GCTAGC 1 cut(s) 314
BspPI GGATC 1 cut(s) 695
BspT107I GGYRCC 1 cut(s) 901
BspTI CTTAAG 1 cut(s) 638
BsrDI GCAATG 4 cut(s) 80, 321, 677, 1152
BsrI ACTGG 1 cut(s) 1092
BssECI CCNNGG 3 cut(s) 249, 525, 1171
BssMI GATC 3 cut(s) 345, 670, 687
BssT1I CCWWGG 2 cut(s) 249, 1171
Bst2UI CCWGG 1 cut(s) 288
Bst4CI ACNGT 4 cut(s) 1035, 1059, 1075, 1133
BstAFI CTTAAG 1 cut(s) 638
BstC8I GCNNGC 4 cut(s) 312, 964, 968, 1247
BstDEI CTNAG 5 cut(s) 633, 683, 908, 929, 1241
BstDSI CCRYGG 1 cut(s) 1171
BstENI CCTNNNNNAGG 1 cut(s) 452
BstF5I GGATG 5 cut(s) 148, 421, 779, 939, 955
BstHHI GCGC 1 cut(s) 380
BstKTI GATC 3 cut(s) 348, 673, 690
BstMAI GTCTC 3 cut(s) 113, 216, 656
BstMBI GATC 3 cut(s) 345, 670, 687
BstMWI GCNNNNNNNGC 4 cut(s) 85, 572, 959, 1223
BstNI CCWGG 1 cut(s) 288
BstSCI CCNGG 1 cut(s) 286
BstSFI CTRYAG 3 cut(s) 409, 964, 1100
BstV1I GCAGC 3 cut(s) 362, 367, 940
BstV2I GAAGAC 2 cut(s) 411, 1134
BstX2I RGATCY 1 cut(s) 670
BstYI RGATCY 1 cut(s) 670
Bsu15I ATCGAT 1 cut(s) 1299
BsuRI GGCC 2 cut(s) 57, 295
BsuTUI ATCGAT 1 cut(s) 1299
BtgI CCRYGG 1 cut(s) 1171
BtsCI GGATG 5 cut(s) 148, 421, 779, 939, 955
BtsIMutI CAGTG 3 cut(s) 489, 905, 1055
BveI ACCTGC 1 cut(s) 509
Cac8I GCNNGC 4 cut(s) 312, 964, 968, 1247
CfoI GCGC 1 cut(s) 380
Cfr13I GGNCC 2 cut(s) 55, 293
ClaI ATCGAT 1 cut(s) 1299
Csp6I GTAC 1 cut(s) 1274
CspCI CAANNNNNGTGG 2 cut(s) 927, 962
CviAII CATG 7 cut(s) 59, 334, 607, 718, 839, 943, 1172
CviQI GTAC 1 cut(s) 1274
DdeI CTNAG 5 cut(s) 633, 683, 908, 929, 1241
DpnI GATC 3 cut(s) 347, 672, 689
DpnII GATC 3 cut(s) 345, 670, 687
Ecl136II GAGCTC 1 cut(s) 274
Eco130I CCWWGG 2 cut(s) 249, 1171
Eco24I GRGCYC 1 cut(s) 276
Eco32I GATATC 1 cut(s) 1024
Eco53kI GAGCTC 1 cut(s) 274
Eco57I CTGAAG 1 cut(s) 423
Eco88I CYCGRG 4 cut(s) 83, 653, 971, 1290
EcoICRI GAGCTC 1 cut(s) 274
EcoNI CCTNNNNNAGG 1 cut(s) 452
EcoRII CCWGG 1 cut(s) 286
EcoRV GATATC 1 cut(s) 1024
EcoT14I CCWWGG 2 cut(s) 249, 1171
EcoT22I ATGCAT 1 cut(s) 768
EcoT38I GRGCYC 1 cut(s) 276
ErhI CCWWGG 2 cut(s) 249, 1171
FaeI CATG 7 cut(s) 62, 337, 610, 721, 842, 946, 1175
FalI AAGNNNNNCTT 2 cut(s) 119, 151
FaqI GGGAC 1 cut(s) 167
FatI CATG 7 cut(s) 58, 333, 606, 717, 838, 942, 1171
FblI GTMKAC 1 cut(s) 14
Fnu4HI GCNGC 3 cut(s) 376, 381, 954
FokI GGATG 5 cut(s) 155, 428, 766, 946, 962
FriOI GRGCYC 1 cut(s) 276
Fsp4HI GCNGC 3 cut(s) 376, 381, 954
FspBI CTAG 4 cut(s) 69, 311, 1016, 1214
GlaI GCGC 1 cut(s) 379
GluI GCNGC 3 cut(s) 376, 381, 954
GsaI CCCAGC 1 cut(s) 153
GsuI CTGGAG 1 cut(s) 309
HaeIII GGCC 2 cut(s) 57, 295
HapII CCGG 1 cut(s) 91
HhaI GCGC 1 cut(s) 380
Hin1II CATG 7 cut(s) 62, 337, 610, 721, 842, 946, 1175
Hin6I GCGC 1 cut(s) 378
HinP1I GCGC 1 cut(s) 378
HincII GTYRAC 2 cut(s) 15, 31
HindII GTYRAC 2 cut(s) 15, 31
HinfI GANTC 8 cut(s) 179, 226, 254, 537, 626, 1142, 1205, 1293
HpaII CCGG 1 cut(s) 91
HphI GGTGA 3 cut(s) 487, 635, 1102
Hpy166II GTNNAC 4 cut(s) 15, 31, 1055, 1093
Hpy188I TCNGA 6 cut(s) 142, 231, 403, 702, 1147, 1167
Hpy188III TCNNGA 6 cut(s) 213, 473, 632, 653, 973, 1229
Hpy8I GTNNAC 4 cut(s) 15, 31, 1055, 1093
HpyAV CCTTC 3 cut(s) 193, 1142, 1330
HpyCH4III ACNGT 4 cut(s) 1035, 1059, 1075, 1133
HpyCH4IV ACGT 1 cut(s) 24
HpyF10VI GCNNNNNNNGC 4 cut(s) 85, 572, 959, 1223
HpyF3I CTNAG 5 cut(s) 633, 683, 908, 929, 1241
HpySE526I ACGT 1 cut(s) 24
Hsp92II CATG 7 cut(s) 62, 337, 610, 721, 842, 946, 1175
HspAI GCGC 1 cut(s) 378
Kzo9I GATC 3 cut(s) 345, 670, 687
LmnI GCTCC 3 cut(s) 271, 279, 1231
Lsp1109I GCAGC 3 cut(s) 362, 367, 940
LweI GCATC 3 cut(s) 235, 764, 940
MaeI CTAG 4 cut(s) 69, 311, 1016, 1214
MaeII ACGT 1 cut(s) 24
MaeIII GTNAC 1 cut(s) 1009
MalI GATC 3 cut(s) 347, 672, 689
MboI GATC 3 cut(s) 345, 670, 687
MboII GAAGA 8 cut(s) 362, 416, 680, 1124, 1127, 1130, 1133, 1139
MfeI CAATTG 2 cut(s) 587, 957
MflI RGATCY 1 cut(s) 670
MhlI GDGCHC 2 cut(s) 90, 276
MluCI AATT 9 cut(s) 19, 266, 320, 587, 613, 807, 957, 1159, 1221
MlyI GAGTC 3 cut(s) 1151, 1199, 1302
MmeI TCCRAC 4 cut(s) 514, 981, 1125, 1171
Mph1103I ATGCAT 1 cut(s) 768
MseI TTAA 3 cut(s) 611, 639, 761
MslI CAYNNNNRTG 1 cut(s) 93
MspA1I CMGCKG 1 cut(s) 1105
MspCI CTTAAG 1 cut(s) 638
MspI CCGG 1 cut(s) 91
MspR9I CCNGG 1 cut(s) 288
MunI CAATTG 2 cut(s) 587, 957
Mva1269I GAATGC 1 cut(s) 930
MvaI CCWGG 1 cut(s) 288
MwoI GCNNNNNNNGC 4 cut(s) 85, 572, 959, 1223
NcoI CCATGG 1 cut(s) 1171
NdeII GATC 3 cut(s) 345, 670, 687
NheI GCTAGC 1 cut(s) 310
NlaIII CATG 7 cut(s) 62, 337, 610, 721, 842, 946, 1175
NlaIV GGNNCC 2 cut(s) 56, 903
NmeAIII GCCGAG 1 cut(s) 550
NsiI ATGCAT 1 cut(s) 768
OliI CACNNNNGTG 1 cut(s) 93
PaeR7I CTCGAG 4 cut(s) 83, 653, 971, 1290
PaqCI CACCTGC 1 cut(s) 509
PctI GAATGC 1 cut(s) 930
PfeI GAWTC 5 cut(s) 179, 226, 254, 537, 626
PkrI GCNGC 3 cut(s) 377, 382, 955
PleI GAGTC 3 cut(s) 1150, 1199, 1301
PpsI GAGTC 3 cut(s) 1150, 1199, 1301
PsiI TTATAA 1 cut(s) 869
Psp124BI GAGCTC 1 cut(s) 276
Psp6I CCWGG 1 cut(s) 286
PspFI CCCAGC 1 cut(s) 149
PspGI CCWGG 1 cut(s) 286
PspN4I GGNNCC 2 cut(s) 56, 903
PspPI GGNCC 2 cut(s) 55, 293
PspXI VCTCGAGB 2 cut(s) 83, 1290
PstI CTGCAG 1 cut(s) 968
PsuI RGATCY 1 cut(s) 670
RsaI GTAC 1 cut(s) 1275
RsaNI GTAC 1 cut(s) 1274
RseI CAYNNNNRTG 1 cut(s) 93
SacI GAGCTC 1 cut(s) 276
SalI GTCGAC 1 cut(s) 13
SaqAI TTAA 3 cut(s) 611, 639, 761
SatI GCNGC 3 cut(s) 376, 381, 954
Sau3AI GATC 3 cut(s) 345, 670, 687
Sau96I GGNCC 2 cut(s) 55, 293
SbfI CCTGCAGG 1 cut(s) 968
ScaI AGTACT 1 cut(s) 1275
SchI GAGTC 3 cut(s) 1151, 1199, 1302
ScrFI CCNGG 1 cut(s) 288
SdaI CCTGCAGG 1 cut(s) 968
SduI GDGCHC 2 cut(s) 90, 276
SfaNI GCATC 3 cut(s) 235, 764, 940
SfcI CTRYAG 3 cut(s) 409, 964, 1100
Sfr274I CTCGAG 4 cut(s) 83, 653, 971, 1290
SlaI CTCGAG 4 cut(s) 83, 653, 971, 1290
SmiMI CAYNNNNRTG 1 cut(s) 93
SmlI CTYRAG 6 cut(s) 83, 473, 638, 653, 971, 1290
SmoI CTYRAG 6 cut(s) 83, 473, 638, 653, 971, 1290
Sse8387I CCTGCAGG 1 cut(s) 968
Sse9I AATT 9 cut(s) 19, 266, 320, 587, 613, 807, 957, 1159, 1221
SsiI CCGC 3 cut(s) 354, 1105, 1319
SspMI CTAG 4 cut(s) 69, 311, 1016, 1214
SstI GAGCTC 1 cut(s) 276
StyD4I CCNGG 1 cut(s) 286
StyI CCWWGG 2 cut(s) 249, 1171
TaaI ACNGT 4 cut(s) 1035, 1059, 1075, 1133
TaiI ACGT 1 cut(s) 27
TasI AATT 9 cut(s) 19, 266, 320, 587, 613, 807, 957, 1159, 1221
TatI WGTACW 1 cut(s) 1273
TfiI GAWTC 5 cut(s) 179, 226, 254, 537, 626
Tru1I TTAA 3 cut(s) 611, 639, 761
Tru9I TTAA 3 cut(s) 611, 639, 761
TscAI CASTG 3 cut(s) 489, 912, 1062
TseI GCWGC 3 cut(s) 375, 380, 953
TspDTI ATGAA 6 cut(s) 332, 350, 432, 1067, 1140, 1167
TspGWI ACGGA 1 cut(s) 452
TspRI CASTG 3 cut(s) 489, 912, 1062
Vha464I CTTAAG 1 cut(s) 638
XagI CCTNNNNNAGG 1 cut(s) 452
XapI RAATTY 2 cut(s) 320, 807
XcmI CCANNNNNNNNNTGG 1 cut(s) 284
XhoI CTCGAG 4 cut(s) 83, 653, 971, 1290
XmiI GTMKAC 1 cut(s) 14
XspI CTAG 4 cut(s) 69, 311, 1016, 1214
ZrmI AGTACT 1 cut(s) 1275
Zsp2I ATGCAT 1 cut(s) 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.