Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000449.1

Orthogroup ID

OG0006676

Physical Location & Seq

Genomic Coordinates Reverse (-)

245138 .. 246381

Gene Structure 1244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000449.1_g000056.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

atgcaaagaacaggtgttcgaccagatagcgttgttgcatctttaatgcattttgctcaaacatccttaaagggtattggaaaatgtcaagtttggaaaaagccggatagcttaccagaacatgaccaaaggactattgtggaaacccttataagcttaatgccaacagaaaaaagctgttcggtgccactgagttttatgtttggaatgctgaggatgtcaatcatggtggatgctgcaattgcctgcaggctcgagattgaaaggaggattgcttacaggttggagatggttacactagatgatatccttataccgtccatttttgcagggggttcactgtatgatgttgataccgttcatcgaatactggtgaacttcctacagcggattgaagaagaagaagatgaagactgtggatatgagtcggaaggcattgctaattctccgagccatggttcattgttgaaagttggacggcttattgactcatatctagctgaaattgctcctgacccatacctcagcttgcaaaagttcgttgctatgattgaagtactgcctgattatgctcgagtcatcgatgatggactttacagggctgttgatatatatttgaaggtacattcaatgctaactgaacaagaatgcaagaagctctgcaagtttatagactgtcaaaagctctctcaagaagcctgcaaccatgctgcacaaaatgatcggctcccagtacaaatgacagtgagggttctgtatttcgagcaggtccgattgaagactgcactgtcaggaaactcaggagatgggtttgtctcgcagagaataagcagcggggtaccaagtgcagccatgtccccccgagataactatgcttcattgaggagagaaaaccgagaactgaagctggagatctcaagaatgagagtgaggctgagcgagttggagaaagagcagttgtttatgaaacaaggaatgatggacaagacaggaaatggcaaaactttcttgacctcaatctctaaggggattggaaaaatgggaatttttagtggtcaagcaggaggtaaacgacagaaatcgagtaggaagtcccggggatcggaggggaaaactggtaggggtaggaggcactctctttcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

381

Amino Acids

42.72

Weight (kDa)

8.9

Isoelectric Point (pI)

46.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08570 AT3G08660 AT3G08660 AT3G08660
fragaria_vesca	FvH4_6g09490 FvH4_6g09490 FvH4_6g09490 FvH4_6g09490
malus_domestica	MD04G1177100.v1.1 MD12G1192300.v1.1
prunus_persica	Prupe.6G296800_v2.0.a1 Prupe.6G296800_v2.0.a1
pyrus_communis	pycom04g15640 pycom12g17930
rosa_chinensis	RchiOBHm_Chr3g0460071
rosa_laevigata	RLG00000025046
rosa_multiflora	Rmu_sc0000449.1_g000056 Rmu_sc0007694.1_g000002
rosa_roxburghii	Rroxscaffold_6G00419870
rosa_rugosa	Rorug03G0039200 Rorug03G0039300
rosa_samantha	Rh3AG097700 Rh3BG100800 Rh3CG102900 Rh3DG102100
rosa_wichuraiana	Rw3G008240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	152
AasI	GACNNNNNNGTC	1 cut(s)	787
Acc36I	ACCTGC	1 cut(s)	757
Acc65I	GGTACC	1 cut(s)	838
AccB1I	GGYRCC	2 cut(s)	184, 838
AciI	CCGC	2 cut(s)	388, 834
AclWI	GGATC	1 cut(s)	1108
AcsI	RAATTY	1 cut(s)	1044
AcuI	CTGAAG	1 cut(s)	923
AfaI	GTAC	4 cut(s)	558, 624, 735, 840
AfiI	CCNNNNNNNGG	2 cut(s)	455, 1102
AgsI	TTSAA	7 cut(s)	263, 395, 469, 554, 619, 630, 778
AluBI	AGCT	8 cut(s)	111, 156, 177, 500, 528, 658, 685, 907
AluI	AGCT	8 cut(s)	111, 156, 177, 500, 528, 658, 685, 907
Alw26I	GTCTC	1 cut(s)	820
AlwI	GGATC	1 cut(s)	1108
Ama87I	CYCGRG	4 cut(s)	254, 573, 861, 1095
ApeKI	GCWGC	4 cut(s)	236, 710, 831, 848
ApoI	RAATTY	1 cut(s)	1044
Asp718I	GGTACC	1 cut(s)	838
AspS9I	GGNCC	1 cut(s)	769
AsuC2I	CCSGG	2 cut(s)	1096, 1097
AsuHPI	GGTGA	1 cut(s)	385
AvaI	CYCGRG	4 cut(s)	254, 573, 861, 1095
AvaII	GGWCC	1 cut(s)	769
BanI	GGYRCC	2 cut(s)	184, 838
BbsI	GAAGAC	2 cut(s)	417, 785
BbvCI	CCTCAGC	2 cut(s)	212, 524
BbvI	GCAGC	4 cut(s)	223, 697, 843, 860
BccI	CCATC	4 cut(s)	283, 581, 800, 973
BceAI	ACGGC	1 cut(s)	494
BcnI	CCSGG	2 cut(s)	1096, 1097
BcoDI	GTCTC	1 cut(s)	820
BfaI	CTAG	3 cut(s)	299, 497, 1144
BfmI	CTRYAG	2 cut(s)	247, 383
BfuAI	ACCTGC	1 cut(s)	757
BglII	AGATCT	1 cut(s)	912
BisI	GCNGC	4 cut(s)	237, 711, 832, 849
BlpI	GCTNAGC	1 cut(s)	935
BlsI	GCNGC	4 cut(s)	238, 712, 833, 850
BmcAI	AGTACT	1 cut(s)	558
Bme1390I	CCNGG	2 cut(s)	1096, 1097
Bme18I	GGWCC	1 cut(s)	769
BmeT110I	CYCGRG	4 cut(s)	254, 573, 861, 1095
BmgT120I	GGNCC	1 cut(s)	769
BmiI	GGNNCC	3 cut(s)	186, 728, 840
BmrFI	CCNGG	2 cut(s)	1096, 1097
BmrI	ACTGGG	1 cut(s)	725
BmsI	GCATC	2 cut(s)	47, 223
BmuI	ACTGGG	1 cut(s)	725
BpiI	GAAGAC	2 cut(s)	417, 785
BplI	GAGNNNNNCTC	1 cut(s)	1120
BpmI	CTGGAG	1 cut(s)	929
Bpu10I	CCTNAGC	2 cut(s)	212, 524
Bpu1102I	GCTNAGC	1 cut(s)	935
BpuEI	CTTGAG	2 cut(s)	675, 901
BpuMI	CCSGG	2 cut(s)	1096, 1097
Bsa29I	ATCGAT	1 cut(s)	582
BsaBI	GATNNNNATC	1 cut(s)	221
BsaJI	CCNNGG	3 cut(s)	454, 1095, 1096
Bsc4I	CCNNNNNNNGG	2 cut(s)	455, 1102
Bse1I	ACTGG	3 cut(s)	375, 731, 1120
Bse3DI	GCAATG	1 cut(s)	435
Bse8I	GATNNNNATC	1 cut(s)	221
BseCI	ATCGAT	1 cut(s)	582
BseDI	CCNNGG	3 cut(s)	454, 1095, 1096
BseGI	GGATG	3 cut(s)	62, 222, 238
BseJI	GATNNNNATC	1 cut(s)	221
BseLI	CCNNNNNNNGG	2 cut(s)	455, 1102
BseMI	GCAATG	1 cut(s)	435
BseMII	CTCAG	5 cut(s)	182, 203, 538, 813, 926
BseNI	ACTGG	3 cut(s)	375, 731, 1120
BseRI	GAGGAG	1 cut(s)	898
BseXI	GCAGC	4 cut(s)	223, 697, 843, 860
BsgI	GTGCAG	3 cut(s)	696, 768, 867
BshNI	GGYRCC	2 cut(s)	184, 838
BshVI	ATCGAT	1 cut(s)	582
BsiHKCI	CYCGRG	4 cut(s)	254, 573, 861, 1095
BsiSI	CCGG	2 cut(s)	104, 1096
BslFI	GGGAC	2 cut(s)	841, 1078
BslI	CCNNNNNNNGG	2 cut(s)	455, 1102
BsmAI	GTCTC	1 cut(s)	820
BsmFI	GGGAC	2 cut(s)	841, 1078
BsmI	GAATGC	2 cut(s)	213, 653
BsoBI	CYCGRG	4 cut(s)	254, 573, 861, 1095
Bsp143I	GATC	3 cut(s)	721, 912, 1100
Bsp1720I	GCTNAGC	1 cut(s)	935
Bsp19I	CCATGG	1 cut(s)	454
BspACI	CCGC	2 cut(s)	388, 834
BspCNI	CTCAG	5 cut(s)	183, 204, 537, 812, 927
BspDI	ATCGAT	1 cut(s)	582
BspLI	GGNNCC	3 cut(s)	186, 728, 840
BspMAI	CTGCAG	1 cut(s)	251
BspMI	ACCTGC	1 cut(s)	757
BspPI	GGATC	1 cut(s)	1108
BspT107I	GGYRCC	2 cut(s)	184, 838
BsrDI	GCAATG	1 cut(s)	435
BsrI	ACTGG	3 cut(s)	375, 731, 1120
BssECI	CCNNGG	3 cut(s)	454, 1095, 1096
BssMI	GATC	3 cut(s)	721, 912, 1100
BssT1I	CCWWGG	1 cut(s)	454
Bst4CI	ACNGT	7 cut(s)	318, 342, 358, 416, 677, 745, 789
BstC8I	GCNNGC	4 cut(s)	247, 251, 530, 700
BstDEI	CTNAG	6 cut(s)	191, 212, 524, 799, 935, 1023
BstDSI	CCRYGG	1 cut(s)	454
BstF5I	GGATG	3 cut(s)	62, 222, 238
BstKTI	GATC	3 cut(s)	724, 915, 1103
BstMAI	GTCTC	1 cut(s)	820
BstMBI	GATC	3 cut(s)	721, 912, 1100
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 506
BstSCI	CCNGG	2 cut(s)	1094, 1095
BstSFI	CTRYAG	2 cut(s)	247, 383
BstV1I	GCAGC	4 cut(s)	223, 697, 843, 860
BstV2I	GAAGAC	2 cut(s)	417, 785
BstX2I	RGATCY	1 cut(s)	912
BstYI	RGATCY	1 cut(s)	912
Bsu15I	ATCGAT	1 cut(s)	582
BsuTUI	ATCGAT	1 cut(s)	582
BtgI	CCRYGG	1 cut(s)	454
BtsCI	GGATG	3 cut(s)	62, 222, 238
BtsIMutI	CAGTG	4 cut(s)	188, 338, 750, 785
BveI	ACCTGC	1 cut(s)	757
Cac8I	GCNNGC	4 cut(s)	247, 251, 530, 700
Cfr13I	GGNCC	1 cut(s)	769
Cfr9I	CCCGGG	1 cut(s)	1095
ClaI	ATCGAT	1 cut(s)	582
Csp6I	GTAC	4 cut(s)	557, 623, 734, 839
CspCI	CAANNNNNGTGG	2 cut(s)	210, 245
CviAII	CATG	5 cut(s)	122, 226, 455, 707, 853
CviQI	GTAC	4 cut(s)	557, 623, 734, 839
DdeI	CTNAG	6 cut(s)	191, 212, 524, 799, 935, 1023
DpnI	GATC	3 cut(s)	723, 914, 1102
DpnII	GATC	3 cut(s)	721, 912, 1100
DrdI	GACNNNNNNGTC	1 cut(s)	787
DseDI	GACNNNNNNGTC	1 cut(s)	787
Eco130I	CCWWGG	1 cut(s)	454
Eco32I	GATATC	1 cut(s)	307
Eco47I	GGWCC	1 cut(s)	769
Eco57I	CTGAAG	1 cut(s)	923
Eco88I	CYCGRG	4 cut(s)	254, 573, 861, 1095
EcoRV	GATATC	1 cut(s)	307
EcoT14I	CCWWGG	1 cut(s)	454
EcoT22I	ATGCAT	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	454
FaeI	CATG	5 cut(s)	125, 229, 458, 710, 856
FaqI	GGGAC	2 cut(s)	841, 1078
FatI	CATG	5 cut(s)	121, 225, 454, 706, 852
FauI	CCCGC	1 cut(s)	827
Fnu4HI	GCNGC	4 cut(s)	237, 711, 832, 849
FokI	GGATG	3 cut(s)	49, 229, 245
Fsp4HI	GCNGC	4 cut(s)	237, 711, 832, 849
FspBI	CTAG	3 cut(s)	299, 497, 1144
GluI	GCNGC	4 cut(s)	237, 711, 832, 849
GsuI	CTGGAG	1 cut(s)	929
HapII	CCGG	2 cut(s)	104, 1096
Hin1II	CATG	5 cut(s)	125, 229, 458, 710, 856
HindIII	AAGCTT	1 cut(s)	154
HinfI	GANTC	3 cut(s)	425, 488, 576
HpaII	CCGG	2 cut(s)	104, 1096
HphI	GGTGA	1 cut(s)	385
Hpy166II	GTNNAC	3 cut(s)	338, 376, 1070
Hpy188I	TCNGA	4 cut(s)	430, 450, 773, 1105
Hpy188III	TCNNGA	7 cut(s)	256, 512, 692, 792, 801, 918, 1009
Hpy8I	GTNNAC	3 cut(s)	338, 376, 1070
HpyAV	CCTTC	2 cut(s)	425, 613
HpyCH4III	ACNGT	7 cut(s)	318, 342, 358, 416, 677, 745, 789
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 506
HpyF3I	CTNAG	6 cut(s)	191, 212, 524, 799, 935, 1023
Hsp92II	CATG	5 cut(s)	125, 229, 458, 710, 856
KpnI	GGTACC	1 cut(s)	842
Kzo9I	GATC	3 cut(s)	721, 912, 1100
LmnI	GCTCC	2 cut(s)	514, 732
Lsp1109I	GCAGC	4 cut(s)	223, 697, 843, 860
LweI	GCATC	2 cut(s)	47, 223
MaeI	CTAG	3 cut(s)	299, 497, 1144
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	3 cut(s)	723, 914, 1102
MboI	GATC	3 cut(s)	721, 912, 1100
MboII	GAAGA	6 cut(s)	407, 410, 413, 416, 422, 790
MfeI	CAATTG	1 cut(s)	240
MflI	RGATCY	1 cut(s)	912
MluCI	AATT	4 cut(s)	240, 442, 504, 1044
MlyI	GAGTC	3 cut(s)	434, 482, 585
MmeI	TCCRAC	4 cut(s)	264, 408, 454, 924
Mph1103I	ATGCAT	1 cut(s)	51
MseI	TTAA	3 cut(s)	44, 68, 158
MspA1I	CMGCKG	2 cut(s)	388, 834
MspI	CCGG	2 cut(s)	104, 1096
MspR9I	CCNGG	2 cut(s)	1096, 1097
MunI	CAATTG	1 cut(s)	240
Mva1269I	GAATGC	2 cut(s)	213, 653
MwoI	GCNNNNNNNGC	2 cut(s)	242, 506
NciI	CCSGG	2 cut(s)	1096, 1097
NcoI	CCATGG	1 cut(s)	454
NdeII	GATC	3 cut(s)	721, 912, 1100
NlaIII	CATG	5 cut(s)	125, 229, 458, 710, 856
NlaIV	GGNNCC	3 cut(s)	186, 728, 840
NsiI	ATGCAT	1 cut(s)	51
PaeR7I	CTCGAG	2 cut(s)	254, 573
PctI	GAATGC	2 cut(s)	213, 653
PkrI	GCNGC	4 cut(s)	238, 712, 833, 850
PleI	GAGTC	3 cut(s)	433, 482, 584
PpsI	GAGTC	3 cut(s)	433, 482, 584
PsiI	TTATAA	1 cut(s)	152
PspN4I	GGNNCC	3 cut(s)	186, 728, 840
PspPI	GGNCC	1 cut(s)	769
PspXI	VCTCGAGB	1 cut(s)	573
PstI	CTGCAG	1 cut(s)	251
PsuI	RGATCY	1 cut(s)	912
RsaI	GTAC	4 cut(s)	558, 624, 735, 840
RsaNI	GTAC	4 cut(s)	557, 623, 734, 839
SaqAI	TTAA	3 cut(s)	44, 68, 158
SatI	GCNGC	4 cut(s)	237, 711, 832, 849
Sau3AI	GATC	3 cut(s)	721, 912, 1100
Sau96I	GGNCC	1 cut(s)	769
SbfI	CCTGCAGG	1 cut(s)	251
ScaI	AGTACT	1 cut(s)	558
SchI	GAGTC	3 cut(s)	434, 482, 585
ScrFI	CCNGG	2 cut(s)	1096, 1097
SdaI	CCTGCAGG	1 cut(s)	251
SfaNI	GCATC	2 cut(s)	47, 223
SfcI	CTRYAG	2 cut(s)	247, 383
Sfr274I	CTCGAG	2 cut(s)	254, 573
SinI	GGWCC	1 cut(s)	769
SlaI	CTCGAG	2 cut(s)	254, 573
SmaI	CCCGGG	1 cut(s)	1097
SmlI	CTYRAG	4 cut(s)	254, 573, 690, 916
SmoI	CTYRAG	4 cut(s)	254, 573, 690, 916
Sse8387I	CCTGCAGG	1 cut(s)	251
Sse9I	AATT	4 cut(s)	240, 442, 504, 1044
SsiI	CCGC	2 cut(s)	388, 834
SspMI	CTAG	3 cut(s)	299, 497, 1144
StyD4I	CCNGG	2 cut(s)	1094, 1095
StyI	CCWWGG	1 cut(s)	454
TaaI	ACNGT	7 cut(s)	318, 342, 358, 416, 677, 745, 789
TaqI	TCGA	7 cut(s)	19, 255, 364, 574, 582, 762, 1082
TasI	AATT	4 cut(s)	240, 442, 504, 1044
TatI	WGTACW	2 cut(s)	556, 733
Tru1I	TTAA	3 cut(s)	44, 68, 158
Tru9I	TTAA	3 cut(s)	44, 68, 158
TscAI	CASTG	4 cut(s)	195, 345, 750, 792
TseI	GCWGC	4 cut(s)	236, 710, 831, 848
TspDTI	ATGAA	5 cut(s)	350, 423, 450, 867, 980
TspMI	CCCGGG	1 cut(s)	1095
TspRI	CASTG	4 cut(s)	195, 345, 750, 792
VpaK11BI	GGWCC	1 cut(s)	769
XapI	RAATTY	1 cut(s)	1044
XhoI	CTCGAG	2 cut(s)	254, 573
XmaI	CCCGGG	1 cut(s)	1095
XspI	CTAG	3 cut(s)	299, 497, 1144
ZrmI	AGTACT	1 cut(s)	558
Zsp2I	ATGCAT	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.