Rw3G008240

Belongs to the NPH3 family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Forward (+)
7648793 .. 7651460
2668 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G008240.1

Sequence Viewer

Length: 1596 bp
ATGGGAATGGTTTCTGAGAACCTTTCTAACCGTTCTCCTAAGCTCTGCAACTCCTTCACCACTCGTATCTTTTCGGATGTTGCTGGGGACATTACAATCGTTGTCGATGGAGAATCCTTCTTACTTCACAAGTTTCCATTGGTGTCTCGAAGTGGAAAGATTCGGAAAATGGTTGCAGATGCCAAGGATTCAGCTGCAAAATTGGAGCTCCACAACATACCCGGAGGACCACAGGCATTTGAACTTGCAATGAAATTTTGTTATGGCATGAACTTTGAGATCACAAGCGAAATGGATGAAAACCTTATTGAGCGAACAGAGATTTACCTGAATGATGTTGTAGTTCAAAGTCTTGAGAAGTCAGTGGAAGTCCTCACCACCTGCCAAACACTACCTCCTATAGCCGAGGAGGTTGGAATTCCAAGCAGATGTGTGGAGGGTATTGCCACCAATGCTTGTAAGGAACAATTGATGTCAGGGTTGTCTATGTTAAATTGTGATGGTGAATCTTCAGAGCTTAAGAGTGAATATTATCAAAGGGTTATTTGTGCCACGGCAAGACTCGGTGTTCGACCGGATAGCATTGTTGCATCTTTCATGCATTTTGCTCAAACATCCTTAAAGGGTATTGGAAAATGTCAAATTTGGAAAAAGCCAGATAGCTTACCAGAACATGACCAAAGGACTATTGTGGAAACCCTTATAAGCTTAATGCCAACAGAGAAAAGCTGTTCGGTGCCACTGAGTTTTATGTTTGGAATGCTGAGGATGTCAATCATGGTGGATGCTGCAATTGCCTGCAGGCTCGAGATTGAAAGGAGGATTGCTTACAGGTTGGAGATGGTTACACTAGATGATATCCTTATACCGTCCATTTATGCAGGGGGTTCACTGTATGATGTTGATACCGTTCATCGAATACTGGTGAACTTCCTACAGCGGATTGAAGAAGAAGAAGATGAAGACTGTGGATATGAGTCGGAAGGCATTGCTAATTCTCCGAGTCATGGTTCATTGTTGAAAAAAATGCTCCTGAGCCTTACCCGAGAAAAGTTCATTGCTATGATTGAAATCCTGCCTTATTATGCTCGTGTCATCGATGATGGGCTTTACAGGGCGGGCGGTATATATTTGAAGGTACATTCATTGCTAACTGAACAAGAATGCAAGAAGCTCAGCGGGTTCATAGACTTACAGATGACAGTGCAAGTTCTGTATTTCGAGCAGCTCCGATTGAAGAATGCAGGAAGCTCACATGGATTCCTCTCGCAGAGAATAAGCAGTGGTGTACCAAGTGCAGCCATGTCCCCTCGAGATAACTATGCTTCATTGAGGAGAGAAAACCGAGAACTGAAGCTGGAGATCTCAAGAATGAGAGTGAGGCTGAGCGAGTTGGAGAAAGAGCAGTTGTTTATGAAACAAGGAATGATGGACAAGACAGGAAATGGCAAAACTTTCTTGACCTCAATCTCTAAGGGGATTGGAAAAATGGGAATTTTTAGTGGTCAAGCAGGAGGTAAACGACAGAAATCGAGTAGGAAGTCCCGGGGATCGGAGGGGAAAACTGGTAGGGGTAGGAGGCACTCTCTTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

531

Amino Acids

59.25

Weight (kDa)

7.89

Isoelectric Point (pI)

50.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB PF00651 30 - 121 1.1e-06 BTB/POZ domain
NPH3 PF03000 171 - 399 1.7e-50 NPH3 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 704
AarI CACCTGC 1 cut(s) 389
Acc36I ACCTGC 1 cut(s) 389
AccB1I GGYRCC 1 cut(s) 736
AciI CCGC 4 cut(s) 940, 1118, 1122, 1179
AclWI GGATC 1 cut(s) 1558
AcsI RAATTY 4 cut(s) 254, 417, 642, 1494
AcuI CTGAAG 2 cut(s) 495, 1373
AfaI GTAC 2 cut(s) 1140, 1290
AfiI CCNNNNNNNGG 2 cut(s) 1007, 1552
AflII CTTAAG 1 cut(s) 518
AgsI TTSAA 8 cut(s) 242, 347, 815, 947, 1021, 1070, 1135, 1237
Alw21I GWGCWC 1 cut(s) 210
Alw26I GTCTC 1 cut(s) 150
AlwI GGATC 1 cut(s) 1558
Ama87I CYCGRG 4 cut(s) 806, 1044, 1311, 1545
ApeKI GCWGC 4 cut(s) 194, 788, 1225, 1298
ApoI RAATTY 4 cut(s) 254, 417, 642, 1494
ArsI GACNNNNNNTTYG 2 cut(s) 552, 584
Asp700I GAANNNNTTC 1 cut(s) 10
AspS9I GGNCC 1 cut(s) 227
AsuC2I CCSGG 3 cut(s) 222, 1546, 1547
AsuHPI GGTGA 4 cut(s) 49, 367, 515, 937
AvaI CYCGRG 4 cut(s) 806, 1044, 1311, 1545
AvaII GGWCC 1 cut(s) 227
BanI GGYRCC 1 cut(s) 736
BanII GRGCYC 1 cut(s) 210
BauI CACGAG 1 cut(s) 1089
BbsI GAAGAC 1 cut(s) 969
Bbv12I GWGCWC 1 cut(s) 210
BbvCI CCTCAGC 1 cut(s) 764
BbvI GCAGC 4 cut(s) 181, 775, 1237, 1310
BccI CCATC 5 cut(s) 101, 494, 835, 1097, 1423
BceAI ACGGC 1 cut(s) 570
BcnI CCSGG 3 cut(s) 222, 1546, 1547
BcoDI GTCTC 1 cut(s) 150
BfaI CTAG 2 cut(s) 851, 1594
BfmI CTRYAG 3 cut(s) 399, 799, 935
BfrI CTTAAG 1 cut(s) 518
BfuAI ACCTGC 1 cut(s) 389
BglII AGATCT 1 cut(s) 1362
BisI GCNGC 4 cut(s) 195, 789, 1226, 1299
BlpI GCTNAGC 2 cut(s) 1175, 1385
BlsI GCNGC 4 cut(s) 196, 790, 1227, 1300
Bme1390I CCNGG 3 cut(s) 222, 1546, 1547
Bme18I GGWCC 1 cut(s) 227
BmeT110I CYCGRG 4 cut(s) 806, 1044, 1311, 1545
BmgT120I GGNCC 1 cut(s) 227
BmiI GGNNCC 1 cut(s) 738
BmrFI CCNGG 3 cut(s) 222, 1546, 1547
BmsI GCATC 3 cut(s) 169, 599, 775
BpiI GAAGAC 1 cut(s) 969
BplI GAGNNNNNCTC 1 cut(s) 1570
BpmI CTGGAG 1 cut(s) 1379
Bpu10I CCTNAGC 3 cut(s) 39, 764, 1034
Bpu1102I GCTNAGC 2 cut(s) 1175, 1385
BpuEI CTTGAG 2 cut(s) 374, 1351
BpuMI CCSGG 3 cut(s) 222, 1546, 1547
Bsa29I ATCGAT 1 cut(s) 1098
BsaBI GATNNNNATC 2 cut(s) 773, 1070
BsaJI CCNNGG 5 cut(s) 183, 405, 552, 1545, 1546
BsaWI WCCGGW 1 cut(s) 574
BsaXI ACNNNNNCTCC 2 cut(s) 379, 409
Bsc4I CCNNNNNNNGG 2 cut(s) 1007, 1552
Bse1I ACTGG 2 cut(s) 927, 1570
Bse3DI GCAATG 4 cut(s) 255, 987, 1056, 1145
Bse8I GATNNNNATC 2 cut(s) 773, 1070
BseCI ATCGAT 1 cut(s) 1098
BseDI CCNNGG 5 cut(s) 183, 405, 552, 1545, 1546
BseGI GGATG 5 cut(s) 82, 301, 614, 774, 790
BseJI GATNNNNATC 2 cut(s) 773, 1070
BseLI CCNNNNNNNGG 2 cut(s) 1007, 1552
BseMI GCAATG 4 cut(s) 255, 987, 1056, 1145
BseMII CTCAG 6 cut(s) 6, 734, 755, 1025, 1189, 1376
BseNI ACTGG 2 cut(s) 927, 1570
BseRI GAGGAG 2 cut(s) 422, 1348
BseXI GCAGC 4 cut(s) 181, 775, 1237, 1310
BseYI CCCAGC 1 cut(s) 83
BsgI GTGCAG 1 cut(s) 1317
Bsh1285I CGRYCG 1 cut(s) 575
BshNI GGYRCC 1 cut(s) 736
BshVI ATCGAT 1 cut(s) 1098
BsiEI CGRYCG 1 cut(s) 575
BsiHKAI GWGCWC 1 cut(s) 210
BsiHKCI CYCGRG 4 cut(s) 806, 1044, 1311, 1545
BsiSI CCGG 3 cut(s) 222, 575, 1546
BslFI GGGAC 3 cut(s) 101, 1291, 1528
BslI CCNNNNNNNGG 2 cut(s) 1007, 1552
BsmAI GTCTC 1 cut(s) 150
BsmFI GGGAC 3 cut(s) 101, 1291, 1528
BsmI GAATGC 3 cut(s) 765, 1169, 1246
BsoBI CYCGRG 4 cut(s) 806, 1044, 1311, 1545
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 3 cut(s) 279, 1362, 1550
Bsp1720I GCTNAGC 2 cut(s) 1175, 1385
BspACI CCGC 4 cut(s) 940, 1118, 1122, 1179
BspCNI CTCAG 6 cut(s) 7, 735, 756, 1026, 1188, 1377
BspDI ATCGAT 1 cut(s) 1098
BspLI GGNNCC 1 cut(s) 738
BspMAI CTGCAG 1 cut(s) 803
BspMI ACCTGC 1 cut(s) 389
BspPI GGATC 1 cut(s) 1558
BspT107I GGYRCC 1 cut(s) 736
BspTI CTTAAG 1 cut(s) 518
BsrDI GCAATG 4 cut(s) 255, 987, 1056, 1145
BsrI ACTGG 2 cut(s) 927, 1570
BssECI CCNNGG 5 cut(s) 183, 405, 552, 1545, 1546
BssMI GATC 3 cut(s) 279, 1362, 1550
BssSI CACGAG 1 cut(s) 1089
BssT1I CCWWGG 1 cut(s) 183
Bst2BI CACGAG 1 cut(s) 1089
Bst4CI ACNGT 6 cut(s) 32, 870, 894, 910, 968, 1204
BstAFI CTTAAG 1 cut(s) 518
BstC8I GCNNGC 3 cut(s) 799, 803, 1120
BstDEI CTNAG 8 cut(s) 15, 39, 743, 764, 1034, 1175, 1385, 1473
BstDSI CCRYGG 1 cut(s) 552
BstF5I GGATG 5 cut(s) 82, 301, 614, 774, 790
BstKTI GATC 3 cut(s) 282, 1365, 1553
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 3 cut(s) 279, 1362, 1550
BstMCI CGRYCG 1 cut(s) 575
BstMWI GCNNNNNNNGC 2 cut(s) 452, 794
BstSCI CCNGG 3 cut(s) 220, 1544, 1545
BstSFI CTRYAG 3 cut(s) 399, 799, 935
BstV1I GCAGC 4 cut(s) 181, 775, 1237, 1310
BstV2I GAAGAC 1 cut(s) 969
BstX2I RGATCY 1 cut(s) 1362
BstYI RGATCY 1 cut(s) 1362
Bsu15I ATCGAT 1 cut(s) 1098
BsuTUI ATCGAT 1 cut(s) 1098
BtgI CCRYGG 1 cut(s) 552
BtsCI GGATG 5 cut(s) 82, 301, 614, 774, 790
BtsI GCAGTG 1 cut(s) 1288
BtsIMutI CAGTG 5 cut(s) 369, 740, 890, 1209, 1288
BveI ACCTGC 1 cut(s) 389
Cac8I GCNNGC 3 cut(s) 799, 803, 1120
Cfr13I GGNCC 1 cut(s) 227
Cfr9I CCCGGG 1 cut(s) 1545
ClaI ATCGAT 1 cut(s) 1098
Csp6I GTAC 2 cut(s) 1139, 1289
CspCI CAANNNNNGTGG 2 cut(s) 762, 797
CviAII CATG 7 cut(s) 268, 598, 674, 778, 1007, 1256, 1303
CviQI GTAC 2 cut(s) 1139, 1289
DdeI CTNAG 8 cut(s) 15, 39, 743, 764, 1034, 1175, 1385, 1473
DpnI GATC 3 cut(s) 281, 1364, 1552
DpnII GATC 3 cut(s) 279, 1362, 1550
Ecl136II GAGCTC 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 210
Eco32I GATATC 1 cut(s) 859
Eco47I GGWCC 1 cut(s) 227
Eco53kI GAGCTC 1 cut(s) 208
Eco57I CTGAAG 2 cut(s) 495, 1373
Eco88I CYCGRG 4 cut(s) 806, 1044, 1311, 1545
EcoICRI GAGCTC 1 cut(s) 208
EcoRI GAATTC 1 cut(s) 417
EcoRV GATATC 1 cut(s) 859
EcoT14I CCWWGG 1 cut(s) 183
EcoT22I ATGCAT 1 cut(s) 603
EcoT38I GRGCYC 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 7 cut(s) 271, 601, 677, 781, 1010, 1259, 1306
FaqI GGGAC 3 cut(s) 101, 1291, 1528
FatI CATG 7 cut(s) 267, 597, 673, 777, 1006, 1255, 1302
FauI CCCGC 2 cut(s) 1111, 1172
Fnu4HI GCNGC 4 cut(s) 195, 789, 1226, 1299
FokI GGATG 5 cut(s) 89, 308, 601, 781, 797
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 4 cut(s) 195, 789, 1226, 1299
FspBI CTAG 2 cut(s) 851, 1594
GluI GCNGC 4 cut(s) 195, 789, 1226, 1299
GsaI CCCAGC 1 cut(s) 87
GsuI CTGGAG 1 cut(s) 1379
HapII CCGG 3 cut(s) 222, 575, 1546
Hin1II CATG 7 cut(s) 271, 601, 677, 781, 1010, 1259, 1306
HindIII AAGCTT 1 cut(s) 706
HinfI GANTC 8 cut(s) 113, 160, 188, 506, 561, 977, 1003, 1260
HpaII CCGG 3 cut(s) 222, 575, 1546
HphI GGTGA 4 cut(s) 49, 367, 515, 937
Hpy166II GTNNAC 4 cut(s) 890, 928, 1289, 1520
Hpy188I TCNGA 8 cut(s) 16, 76, 165, 514, 982, 1002, 1232, 1555
Hpy188III TCNNGA 7 cut(s) 147, 353, 808, 1033, 1313, 1368, 1459
Hpy8I GTNNAC 4 cut(s) 890, 928, 1289, 1520
HpyAV CCTTC 4 cut(s) 64, 127, 977, 1129
HpyCH4III ACNGT 6 cut(s) 32, 870, 894, 910, 968, 1204
HpyF10VI GCNNNNNNNGC 2 cut(s) 452, 794
HpyF3I CTNAG 8 cut(s) 15, 39, 743, 764, 1034, 1175, 1385, 1473
Hsp92II CATG 7 cut(s) 271, 601, 677, 781, 1010, 1259, 1306
Kzo9I GATC 3 cut(s) 279, 1362, 1550
LmnI GCTCC 4 cut(s) 205, 213, 1035, 1233
Lsp1109I GCAGC 4 cut(s) 181, 775, 1237, 1310
LweI GCATC 3 cut(s) 169, 599, 775
MaeI CTAG 2 cut(s) 851, 1594
MaeIII GTNAC 1 cut(s) 844
MalI GATC 3 cut(s) 281, 1364, 1552
MboI GATC 3 cut(s) 279, 1362, 1550
MboII GAAGA 7 cut(s) 501, 959, 962, 965, 968, 974, 1249
MfeI CAATTG 2 cut(s) 467, 792
MflI RGATCY 1 cut(s) 1362
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 9 cut(s) 200, 254, 417, 467, 493, 642, 792, 994, 1494
MlyI GAGTC 3 cut(s) 555, 986, 1012
MmeI TCCRAC 4 cut(s) 394, 816, 960, 1374
Mph1103I ATGCAT 1 cut(s) 603
MroXI GAANNNNTTC 1 cut(s) 10
MseI TTAA 4 cut(s) 491, 519, 620, 710
MslI CAYNNNNRTG 1 cut(s) 1061
MspA1I CMGCKG 3 cut(s) 194, 940, 1179
MspCI CTTAAG 1 cut(s) 518
MspI CCGG 3 cut(s) 222, 575, 1546
MspR9I CCNGG 3 cut(s) 222, 1546, 1547
MunI CAATTG 2 cut(s) 467, 792
Mva1269I GAATGC 3 cut(s) 765, 1169, 1246
MwoI GCNNNNNNNGC 2 cut(s) 452, 794
NciI CCSGG 3 cut(s) 222, 1546, 1547
NdeII GATC 3 cut(s) 279, 1362, 1550
NlaIII CATG 7 cut(s) 271, 601, 677, 781, 1010, 1259, 1306
NlaIV GGNNCC 1 cut(s) 738
NmeAIII GCCGAG 1 cut(s) 430
NsiI ATGCAT 1 cut(s) 603
PaeR7I CTCGAG 2 cut(s) 806, 1311
PaqCI CACCTGC 1 cut(s) 389
PctI GAATGC 3 cut(s) 765, 1169, 1246
PdmI GAANNNNTTC 1 cut(s) 10
PfeI GAWTC 5 cut(s) 113, 160, 188, 506, 1260
PkrI GCNGC 4 cut(s) 196, 790, 1227, 1300
PleI GAGTC 3 cut(s) 555, 985, 1011
PpsI GAGTC 3 cut(s) 555, 985, 1011
PsiI TTATAA 1 cut(s) 704
Psp124BI GAGCTC 1 cut(s) 210
PspFI CCCAGC 1 cut(s) 83
PspN4I GGNNCC 1 cut(s) 738
PspPI GGNCC 1 cut(s) 227
PstI CTGCAG 1 cut(s) 803
PsuI RGATCY 1 cut(s) 1362
PvuII CAGCTG 1 cut(s) 194
RsaI GTAC 2 cut(s) 1140, 1290
RsaNI GTAC 2 cut(s) 1139, 1289
RseI CAYNNNNRTG 1 cut(s) 1061
SacI GAGCTC 1 cut(s) 210
SaqAI TTAA 4 cut(s) 491, 519, 620, 710
SatI GCNGC 4 cut(s) 195, 789, 1226, 1299
Sau3AI GATC 3 cut(s) 279, 1362, 1550
Sau96I GGNCC 1 cut(s) 227
SbfI CCTGCAGG 1 cut(s) 803
SchI GAGTC 3 cut(s) 555, 986, 1012
ScrFI CCNGG 3 cut(s) 222, 1546, 1547
SdaI CCTGCAGG 1 cut(s) 803
SduI GDGCHC 1 cut(s) 210
SfaNI GCATC 3 cut(s) 169, 599, 775
SfcI CTRYAG 3 cut(s) 399, 799, 935
Sfr274I CTCGAG 2 cut(s) 806, 1311
SinI GGWCC 1 cut(s) 227
SlaI CTCGAG 2 cut(s) 806, 1311
SmaI CCCGGG 1 cut(s) 1547
SmiMI CAYNNNNRTG 1 cut(s) 1061
SmlI CTYRAG 5 cut(s) 353, 518, 806, 1311, 1366
SmoI CTYRAG 5 cut(s) 353, 518, 806, 1311, 1366
Sse8387I CCTGCAGG 1 cut(s) 803
Sse9I AATT 9 cut(s) 200, 254, 417, 467, 493, 642, 792, 994, 1494
SsiI CCGC 4 cut(s) 940, 1118, 1122, 1179
SspI AATATT 1 cut(s) 530
SspMI CTAG 2 cut(s) 851, 1594
SstI GAGCTC 1 cut(s) 210
StyD4I CCNGG 3 cut(s) 220, 1544, 1545
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 6 cut(s) 32, 870, 894, 910, 968, 1204
TaqI TCGA 9 cut(s) 105, 148, 571, 807, 916, 1098, 1221, 1312, 1532
TasI AATT 9 cut(s) 200, 254, 417, 467, 493, 642, 792, 994, 1494
TfiI GAWTC 5 cut(s) 113, 160, 188, 506, 1260
Tru1I TTAA 4 cut(s) 491, 519, 620, 710
Tru9I TTAA 4 cut(s) 491, 519, 620, 710
TscAI CASTG 5 cut(s) 369, 747, 897, 1209, 1288
TseI GCWGC 4 cut(s) 194, 788, 1225, 1298
TspMI CCCGGG 1 cut(s) 1545
TspRI CASTG 5 cut(s) 369, 747, 897, 1209, 1288
Vha464I CTTAAG 1 cut(s) 518
VpaK11BI GGWCC 1 cut(s) 227
XapI RAATTY 4 cut(s) 254, 417, 642, 1494
XhoI CTCGAG 2 cut(s) 806, 1311
XmaI CCCGGG 1 cut(s) 1545
XmnI GAANNNNTTC 1 cut(s) 10
XspI CTAG 2 cut(s) 851, 1594
Zsp2I ATGCAT 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.