Belongs to the NPH3 family
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G08570 AT3G08660 AT3G08660 AT3G08660 |
| fragaria_vesca | FvH4_6g09490 FvH4_6g09490 FvH4_6g09490 FvH4_6g09490 |
| malus_domestica | MD04G1177100.v1.1 MD12G1192300.v1.1 |
| prunus_persica | Prupe.6G296800_v2.0.a1 Prupe.6G296800_v2.0.a1 |
| pyrus_communis | pycom04g15640 pycom12g17930 |
| rosa_chinensis | RchiOBHm_Chr3g0460071 |
| rosa_laevigata | RLG00000025046 |
| rosa_multiflora | Rmu_sc0000449.1_g000056 Rmu_sc0007694.1_g000002 |
| rosa_roxburghii | Rroxscaffold_6G00419870 |
| rosa_rugosa | Rorug03G0039200 Rorug03G0039300 |
| rosa_samantha | Rh3AG097700 Rh3BG100800 Rh3CG102900 Rh3DG102100 |
| rosa_wichuraiana | Rw3G008240 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 704 |
| AarI | CACCTGC | 1 cut(s) | 389 |
| Acc36I | ACCTGC | 1 cut(s) | 389 |
| AccB1I | GGYRCC | 1 cut(s) | 736 |
| AciI | CCGC | 4 cut(s) | 940, 1118, 1122, 1179 |
| AclWI | GGATC | 1 cut(s) | 1558 |
| AcsI | RAATTY | 4 cut(s) | 254, 417, 642, 1494 |
| AcuI | CTGAAG | 2 cut(s) | 495, 1373 |
| AfaI | GTAC | 2 cut(s) | 1140, 1290 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1007, 1552 |
| AflII | CTTAAG | 1 cut(s) | 518 |
| AgsI | TTSAA | 8 cut(s) | 242, 347, 815, 947, 1021, 1070, 1135, 1237 |
| Alw21I | GWGCWC | 1 cut(s) | 210 |
| Alw26I | GTCTC | 1 cut(s) | 150 |
| AlwI | GGATC | 1 cut(s) | 1558 |
| Ama87I | CYCGRG | 4 cut(s) | 806, 1044, 1311, 1545 |
| ApeKI | GCWGC | 4 cut(s) | 194, 788, 1225, 1298 |
| ApoI | RAATTY | 4 cut(s) | 254, 417, 642, 1494 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 552, 584 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 10 |
| AspS9I | GGNCC | 1 cut(s) | 227 |
| AsuC2I | CCSGG | 3 cut(s) | 222, 1546, 1547 |
| AsuHPI | GGTGA | 4 cut(s) | 49, 367, 515, 937 |
| AvaI | CYCGRG | 4 cut(s) | 806, 1044, 1311, 1545 |
| AvaII | GGWCC | 1 cut(s) | 227 |
| BanI | GGYRCC | 1 cut(s) | 736 |
| BanII | GRGCYC | 1 cut(s) | 210 |
| BauI | CACGAG | 1 cut(s) | 1089 |
| BbsI | GAAGAC | 1 cut(s) | 969 |
| Bbv12I | GWGCWC | 1 cut(s) | 210 |
| BbvCI | CCTCAGC | 1 cut(s) | 764 |
| BbvI | GCAGC | 4 cut(s) | 181, 775, 1237, 1310 |
| BccI | CCATC | 5 cut(s) | 101, 494, 835, 1097, 1423 |
| BceAI | ACGGC | 1 cut(s) | 570 |
| BcnI | CCSGG | 3 cut(s) | 222, 1546, 1547 |
| BcoDI | GTCTC | 1 cut(s) | 150 |
| BfaI | CTAG | 2 cut(s) | 851, 1594 |
| BfmI | CTRYAG | 3 cut(s) | 399, 799, 935 |
| BfrI | CTTAAG | 1 cut(s) | 518 |
| BfuAI | ACCTGC | 1 cut(s) | 389 |
| BglII | AGATCT | 1 cut(s) | 1362 |
| BisI | GCNGC | 4 cut(s) | 195, 789, 1226, 1299 |
| BlpI | GCTNAGC | 2 cut(s) | 1175, 1385 |
| BlsI | GCNGC | 4 cut(s) | 196, 790, 1227, 1300 |
| Bme1390I | CCNGG | 3 cut(s) | 222, 1546, 1547 |
| Bme18I | GGWCC | 1 cut(s) | 227 |
| BmeT110I | CYCGRG | 4 cut(s) | 806, 1044, 1311, 1545 |
| BmgT120I | GGNCC | 1 cut(s) | 227 |
| BmiI | GGNNCC | 1 cut(s) | 738 |
| BmrFI | CCNGG | 3 cut(s) | 222, 1546, 1547 |
| BmsI | GCATC | 3 cut(s) | 169, 599, 775 |
| BpiI | GAAGAC | 1 cut(s) | 969 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 1570 |
| BpmI | CTGGAG | 1 cut(s) | 1379 |
| Bpu10I | CCTNAGC | 3 cut(s) | 39, 764, 1034 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1175, 1385 |
| BpuEI | CTTGAG | 2 cut(s) | 374, 1351 |
| BpuMI | CCSGG | 3 cut(s) | 222, 1546, 1547 |
| Bsa29I | ATCGAT | 1 cut(s) | 1098 |
| BsaBI | GATNNNNATC | 2 cut(s) | 773, 1070 |
| BsaJI | CCNNGG | 5 cut(s) | 183, 405, 552, 1545, 1546 |
| BsaWI | WCCGGW | 1 cut(s) | 574 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 379, 409 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1007, 1552 |
| Bse1I | ACTGG | 2 cut(s) | 927, 1570 |
| Bse3DI | GCAATG | 4 cut(s) | 255, 987, 1056, 1145 |
| Bse8I | GATNNNNATC | 2 cut(s) | 773, 1070 |
| BseCI | ATCGAT | 1 cut(s) | 1098 |
| BseDI | CCNNGG | 5 cut(s) | 183, 405, 552, 1545, 1546 |
| BseGI | GGATG | 5 cut(s) | 82, 301, 614, 774, 790 |
| BseJI | GATNNNNATC | 2 cut(s) | 773, 1070 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1007, 1552 |
| BseMI | GCAATG | 4 cut(s) | 255, 987, 1056, 1145 |
| BseMII | CTCAG | 6 cut(s) | 6, 734, 755, 1025, 1189, 1376 |
| BseNI | ACTGG | 2 cut(s) | 927, 1570 |
| BseRI | GAGGAG | 2 cut(s) | 422, 1348 |
| BseXI | GCAGC | 4 cut(s) | 181, 775, 1237, 1310 |
| BseYI | CCCAGC | 1 cut(s) | 83 |
| BsgI | GTGCAG | 1 cut(s) | 1317 |
| Bsh1285I | CGRYCG | 1 cut(s) | 575 |
| BshNI | GGYRCC | 1 cut(s) | 736 |
| BshVI | ATCGAT | 1 cut(s) | 1098 |
| BsiEI | CGRYCG | 1 cut(s) | 575 |
| BsiHKAI | GWGCWC | 1 cut(s) | 210 |
| BsiHKCI | CYCGRG | 4 cut(s) | 806, 1044, 1311, 1545 |
| BsiSI | CCGG | 3 cut(s) | 222, 575, 1546 |
| BslFI | GGGAC | 3 cut(s) | 101, 1291, 1528 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1007, 1552 |
| BsmAI | GTCTC | 1 cut(s) | 150 |
| BsmFI | GGGAC | 3 cut(s) | 101, 1291, 1528 |
| BsmI | GAATGC | 3 cut(s) | 765, 1169, 1246 |
| BsoBI | CYCGRG | 4 cut(s) | 806, 1044, 1311, 1545 |
| Bsp1286I | GDGCHC | 1 cut(s) | 210 |
| Bsp143I | GATC | 3 cut(s) | 279, 1362, 1550 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1175, 1385 |
| BspACI | CCGC | 4 cut(s) | 940, 1118, 1122, 1179 |
| BspCNI | CTCAG | 6 cut(s) | 7, 735, 756, 1026, 1188, 1377 |
| BspDI | ATCGAT | 1 cut(s) | 1098 |
| BspLI | GGNNCC | 1 cut(s) | 738 |
| BspMAI | CTGCAG | 1 cut(s) | 803 |
| BspMI | ACCTGC | 1 cut(s) | 389 |
| BspPI | GGATC | 1 cut(s) | 1558 |
| BspT107I | GGYRCC | 1 cut(s) | 736 |
| BspTI | CTTAAG | 1 cut(s) | 518 |
| BsrDI | GCAATG | 4 cut(s) | 255, 987, 1056, 1145 |
| BsrI | ACTGG | 2 cut(s) | 927, 1570 |
| BssECI | CCNNGG | 5 cut(s) | 183, 405, 552, 1545, 1546 |
| BssMI | GATC | 3 cut(s) | 279, 1362, 1550 |
| BssSI | CACGAG | 1 cut(s) | 1089 |
| BssT1I | CCWWGG | 1 cut(s) | 183 |
| Bst2BI | CACGAG | 1 cut(s) | 1089 |
| Bst4CI | ACNGT | 6 cut(s) | 32, 870, 894, 910, 968, 1204 |
| BstAFI | CTTAAG | 1 cut(s) | 518 |
| BstC8I | GCNNGC | 3 cut(s) | 799, 803, 1120 |
| BstDEI | CTNAG | 8 cut(s) | 15, 39, 743, 764, 1034, 1175, 1385, 1473 |
| BstDSI | CCRYGG | 1 cut(s) | 552 |
| BstF5I | GGATG | 5 cut(s) | 82, 301, 614, 774, 790 |
| BstKTI | GATC | 3 cut(s) | 282, 1365, 1553 |
| BstMAI | GTCTC | 1 cut(s) | 150 |
| BstMBI | GATC | 3 cut(s) | 279, 1362, 1550 |
| BstMCI | CGRYCG | 1 cut(s) | 575 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 452, 794 |
| BstSCI | CCNGG | 3 cut(s) | 220, 1544, 1545 |
| BstSFI | CTRYAG | 3 cut(s) | 399, 799, 935 |
| BstV1I | GCAGC | 4 cut(s) | 181, 775, 1237, 1310 |
| BstV2I | GAAGAC | 1 cut(s) | 969 |
| BstX2I | RGATCY | 1 cut(s) | 1362 |
| BstYI | RGATCY | 1 cut(s) | 1362 |
| Bsu15I | ATCGAT | 1 cut(s) | 1098 |
| BsuTUI | ATCGAT | 1 cut(s) | 1098 |
| BtgI | CCRYGG | 1 cut(s) | 552 |
| BtsCI | GGATG | 5 cut(s) | 82, 301, 614, 774, 790 |
| BtsI | GCAGTG | 1 cut(s) | 1288 |
| BtsIMutI | CAGTG | 5 cut(s) | 369, 740, 890, 1209, 1288 |
| BveI | ACCTGC | 1 cut(s) | 389 |
| Cac8I | GCNNGC | 3 cut(s) | 799, 803, 1120 |
| Cfr13I | GGNCC | 1 cut(s) | 227 |
| Cfr9I | CCCGGG | 1 cut(s) | 1545 |
| ClaI | ATCGAT | 1 cut(s) | 1098 |
| Csp6I | GTAC | 2 cut(s) | 1139, 1289 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 762, 797 |
| CviAII | CATG | 7 cut(s) | 268, 598, 674, 778, 1007, 1256, 1303 |
| CviQI | GTAC | 2 cut(s) | 1139, 1289 |
| DdeI | CTNAG | 8 cut(s) | 15, 39, 743, 764, 1034, 1175, 1385, 1473 |
| DpnI | GATC | 3 cut(s) | 281, 1364, 1552 |
| DpnII | GATC | 3 cut(s) | 279, 1362, 1550 |
| Ecl136II | GAGCTC | 1 cut(s) | 208 |
| Eco130I | CCWWGG | 1 cut(s) | 183 |
| Eco24I | GRGCYC | 1 cut(s) | 210 |
| Eco32I | GATATC | 1 cut(s) | 859 |
| Eco47I | GGWCC | 1 cut(s) | 227 |
| Eco53kI | GAGCTC | 1 cut(s) | 208 |
| Eco57I | CTGAAG | 2 cut(s) | 495, 1373 |
| Eco88I | CYCGRG | 4 cut(s) | 806, 1044, 1311, 1545 |
| EcoICRI | GAGCTC | 1 cut(s) | 208 |
| EcoRI | GAATTC | 1 cut(s) | 417 |
| EcoRV | GATATC | 1 cut(s) | 859 |
| EcoT14I | CCWWGG | 1 cut(s) | 183 |
| EcoT22I | ATGCAT | 1 cut(s) | 603 |
| EcoT38I | GRGCYC | 1 cut(s) | 210 |
| ErhI | CCWWGG | 1 cut(s) | 183 |
| FaeI | CATG | 7 cut(s) | 271, 601, 677, 781, 1010, 1259, 1306 |
| FaqI | GGGAC | 3 cut(s) | 101, 1291, 1528 |
| FatI | CATG | 7 cut(s) | 267, 597, 673, 777, 1006, 1255, 1302 |
| FauI | CCCGC | 2 cut(s) | 1111, 1172 |
| Fnu4HI | GCNGC | 4 cut(s) | 195, 789, 1226, 1299 |
| FokI | GGATG | 5 cut(s) | 89, 308, 601, 781, 797 |
| FriOI | GRGCYC | 1 cut(s) | 210 |
| Fsp4HI | GCNGC | 4 cut(s) | 195, 789, 1226, 1299 |
| FspBI | CTAG | 2 cut(s) | 851, 1594 |
| GluI | GCNGC | 4 cut(s) | 195, 789, 1226, 1299 |
| GsaI | CCCAGC | 1 cut(s) | 87 |
| GsuI | CTGGAG | 1 cut(s) | 1379 |
| HapII | CCGG | 3 cut(s) | 222, 575, 1546 |
| Hin1II | CATG | 7 cut(s) | 271, 601, 677, 781, 1010, 1259, 1306 |
| HindIII | AAGCTT | 1 cut(s) | 706 |
| HinfI | GANTC | 8 cut(s) | 113, 160, 188, 506, 561, 977, 1003, 1260 |
| HpaII | CCGG | 3 cut(s) | 222, 575, 1546 |
| HphI | GGTGA | 4 cut(s) | 49, 367, 515, 937 |
| Hpy166II | GTNNAC | 4 cut(s) | 890, 928, 1289, 1520 |
| Hpy188I | TCNGA | 8 cut(s) | 16, 76, 165, 514, 982, 1002, 1232, 1555 |
| Hpy188III | TCNNGA | 7 cut(s) | 147, 353, 808, 1033, 1313, 1368, 1459 |
| Hpy8I | GTNNAC | 4 cut(s) | 890, 928, 1289, 1520 |
| HpyAV | CCTTC | 4 cut(s) | 64, 127, 977, 1129 |
| HpyCH4III | ACNGT | 6 cut(s) | 32, 870, 894, 910, 968, 1204 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 452, 794 |
| HpyF3I | CTNAG | 8 cut(s) | 15, 39, 743, 764, 1034, 1175, 1385, 1473 |
| Hsp92II | CATG | 7 cut(s) | 271, 601, 677, 781, 1010, 1259, 1306 |
| Kzo9I | GATC | 3 cut(s) | 279, 1362, 1550 |
| LmnI | GCTCC | 4 cut(s) | 205, 213, 1035, 1233 |
| Lsp1109I | GCAGC | 4 cut(s) | 181, 775, 1237, 1310 |
| LweI | GCATC | 3 cut(s) | 169, 599, 775 |
| MaeI | CTAG | 2 cut(s) | 851, 1594 |
| MaeIII | GTNAC | 1 cut(s) | 844 |
| MalI | GATC | 3 cut(s) | 281, 1364, 1552 |
| MboI | GATC | 3 cut(s) | 279, 1362, 1550 |
| MboII | GAAGA | 7 cut(s) | 501, 959, 962, 965, 968, 974, 1249 |
| MfeI | CAATTG | 2 cut(s) | 467, 792 |
| MflI | RGATCY | 1 cut(s) | 1362 |
| MhlI | GDGCHC | 1 cut(s) | 210 |
| MluCI | AATT | 9 cut(s) | 200, 254, 417, 467, 493, 642, 792, 994, 1494 |
| MlyI | GAGTC | 3 cut(s) | 555, 986, 1012 |
| MmeI | TCCRAC | 4 cut(s) | 394, 816, 960, 1374 |
| Mph1103I | ATGCAT | 1 cut(s) | 603 |
| MroXI | GAANNNNTTC | 1 cut(s) | 10 |
| MseI | TTAA | 4 cut(s) | 491, 519, 620, 710 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1061 |
| MspA1I | CMGCKG | 3 cut(s) | 194, 940, 1179 |
| MspCI | CTTAAG | 1 cut(s) | 518 |
| MspI | CCGG | 3 cut(s) | 222, 575, 1546 |
| MspR9I | CCNGG | 3 cut(s) | 222, 1546, 1547 |
| MunI | CAATTG | 2 cut(s) | 467, 792 |
| Mva1269I | GAATGC | 3 cut(s) | 765, 1169, 1246 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 452, 794 |
| NciI | CCSGG | 3 cut(s) | 222, 1546, 1547 |
| NdeII | GATC | 3 cut(s) | 279, 1362, 1550 |
| NlaIII | CATG | 7 cut(s) | 271, 601, 677, 781, 1010, 1259, 1306 |
| NlaIV | GGNNCC | 1 cut(s) | 738 |
| NmeAIII | GCCGAG | 1 cut(s) | 430 |
| NsiI | ATGCAT | 1 cut(s) | 603 |
| PaeR7I | CTCGAG | 2 cut(s) | 806, 1311 |
| PaqCI | CACCTGC | 1 cut(s) | 389 |
| PctI | GAATGC | 3 cut(s) | 765, 1169, 1246 |
| PdmI | GAANNNNTTC | 1 cut(s) | 10 |
| PfeI | GAWTC | 5 cut(s) | 113, 160, 188, 506, 1260 |
| PkrI | GCNGC | 4 cut(s) | 196, 790, 1227, 1300 |
| PleI | GAGTC | 3 cut(s) | 555, 985, 1011 |
| PpsI | GAGTC | 3 cut(s) | 555, 985, 1011 |
| PsiI | TTATAA | 1 cut(s) | 704 |
| Psp124BI | GAGCTC | 1 cut(s) | 210 |
| PspFI | CCCAGC | 1 cut(s) | 83 |
| PspN4I | GGNNCC | 1 cut(s) | 738 |
| PspPI | GGNCC | 1 cut(s) | 227 |
| PstI | CTGCAG | 1 cut(s) | 803 |
| PsuI | RGATCY | 1 cut(s) | 1362 |
| PvuII | CAGCTG | 1 cut(s) | 194 |
| RsaI | GTAC | 2 cut(s) | 1140, 1290 |
| RsaNI | GTAC | 2 cut(s) | 1139, 1289 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1061 |
| SacI | GAGCTC | 1 cut(s) | 210 |
| SaqAI | TTAA | 4 cut(s) | 491, 519, 620, 710 |
| SatI | GCNGC | 4 cut(s) | 195, 789, 1226, 1299 |
| Sau3AI | GATC | 3 cut(s) | 279, 1362, 1550 |
| Sau96I | GGNCC | 1 cut(s) | 227 |
| SbfI | CCTGCAGG | 1 cut(s) | 803 |
| SchI | GAGTC | 3 cut(s) | 555, 986, 1012 |
| ScrFI | CCNGG | 3 cut(s) | 222, 1546, 1547 |
| SdaI | CCTGCAGG | 1 cut(s) | 803 |
| SduI | GDGCHC | 1 cut(s) | 210 |
| SfaNI | GCATC | 3 cut(s) | 169, 599, 775 |
| SfcI | CTRYAG | 3 cut(s) | 399, 799, 935 |
| Sfr274I | CTCGAG | 2 cut(s) | 806, 1311 |
| SinI | GGWCC | 1 cut(s) | 227 |
| SlaI | CTCGAG | 2 cut(s) | 806, 1311 |
| SmaI | CCCGGG | 1 cut(s) | 1547 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1061 |
| SmlI | CTYRAG | 5 cut(s) | 353, 518, 806, 1311, 1366 |
| SmoI | CTYRAG | 5 cut(s) | 353, 518, 806, 1311, 1366 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 803 |
| Sse9I | AATT | 9 cut(s) | 200, 254, 417, 467, 493, 642, 792, 994, 1494 |
| SsiI | CCGC | 4 cut(s) | 940, 1118, 1122, 1179 |
| SspI | AATATT | 1 cut(s) | 530 |
| SspMI | CTAG | 2 cut(s) | 851, 1594 |
| SstI | GAGCTC | 1 cut(s) | 210 |
| StyD4I | CCNGG | 3 cut(s) | 220, 1544, 1545 |
| StyI | CCWWGG | 1 cut(s) | 183 |
| TaaI | ACNGT | 6 cut(s) | 32, 870, 894, 910, 968, 1204 |
| TaqI | TCGA | 9 cut(s) | 105, 148, 571, 807, 916, 1098, 1221, 1312, 1532 |
| TasI | AATT | 9 cut(s) | 200, 254, 417, 467, 493, 642, 792, 994, 1494 |
| TfiI | GAWTC | 5 cut(s) | 113, 160, 188, 506, 1260 |
| Tru1I | TTAA | 4 cut(s) | 491, 519, 620, 710 |
| Tru9I | TTAA | 4 cut(s) | 491, 519, 620, 710 |
| TscAI | CASTG | 5 cut(s) | 369, 747, 897, 1209, 1288 |
| TseI | GCWGC | 4 cut(s) | 194, 788, 1225, 1298 |
| TspMI | CCCGGG | 1 cut(s) | 1545 |
| TspRI | CASTG | 5 cut(s) | 369, 747, 897, 1209, 1288 |
| Vha464I | CTTAAG | 1 cut(s) | 518 |
| VpaK11BI | GGWCC | 1 cut(s) | 227 |
| XapI | RAATTY | 4 cut(s) | 254, 417, 642, 1494 |
| XhoI | CTCGAG | 2 cut(s) | 806, 1311 |
| XmaI | CCCGGG | 1 cut(s) | 1545 |
| XmnI | GAANNNNTTC | 1 cut(s) | 10 |
| XspI | CTAG | 2 cut(s) | 851, 1594 |
| Zsp2I | ATGCAT | 1 cut(s) | 603 |