Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007694.1

Orthogroup ID

OG0006676

Physical Location & Seq

Genomic Coordinates Reverse (-)

1766 .. 2784

Gene Structure 1019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007694.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

atggtggatgctgcaattgcctgcaggctcgagattgaaaggaggattgcttacaggttggagatggttacactagatgatatccttataccgtccatttttgcagggggttcactgtatgatgttgataccgttcatcgaatactggtgaacttcctacagcggattgaagaagaagaagatgaagactgtggatatgagtcggaaggcattgctaattctccgagccatggttcattgttgaaagttggacggcttattgactcatatctagctgaaattgctcctgacccatacctcagcttgcaaaagttcgttgctatgattgaagtactgcctgattatgctcgagtacattcaatgctaactgaacaagaatgcaagaagctctgcaagtttatagactgtcaaaagctctctcaagaagcctgcaaccatgctgcacaaaatgatcggctcccagtacaaatgacagtgagggttctgtatttcgagcaggtccgattgaagactgcactgtcaggaaactcaggagatgggtttgtctcgcagagaataagcagcggggtaccaagtgcagccatgtccccccgagataactatgcttcattgaggagagaaaaccgagaactgaagctggagatctcaagaatgagagtgaggctgagcgagttggagaaagagcagttgtttatgaaacaaggaatgatggacaagacaggaaatggcaaaactttcttgacctcaatctctaaggggattggaaaaatgggaatttttagtggtcaagcaggaggtaaacgacagaaatcgagtaggaagtcccggggatcggaggggaaaactggtaggggtaggaggcactctctttcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

291

Amino Acids

32.59

Weight (kDa)

8.82

Isoelectric Point (pI)

52.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08570 AT3G08660 AT3G08660 AT3G08660
fragaria_vesca	FvH4_6g09490 FvH4_6g09490 FvH4_6g09490 FvH4_6g09490
malus_domestica	MD04G1177100.v1.1 MD12G1192300.v1.1
prunus_persica	Prupe.6G296800_v2.0.a1 Prupe.6G296800_v2.0.a1
pyrus_communis	pycom04g15640 pycom12g17930
rosa_chinensis	RchiOBHm_Chr3g0460071
rosa_laevigata	RLG00000025046
rosa_multiflora	Rmu_sc0000449.1_g000056 Rmu_sc0007694.1_g000002
rosa_roxburghii	Rroxscaffold_6G00419870
rosa_rugosa	Rorug03G0039200 Rorug03G0039300
rosa_samantha	Rh3AG097700 Rh3BG100800 Rh3CG102900 Rh3DG102100
rosa_wichuraiana	Rw3G008240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	517
Acc36I	ACCTGC	1 cut(s)	487
Acc65I	GGTACC	1 cut(s)	568
AccB1I	GGYRCC	1 cut(s)	568
AciI	CCGC	2 cut(s)	163, 564
AclWI	GGATC	1 cut(s)	838
AcsI	RAATTY	1 cut(s)	774
AcuI	CTGAAG	1 cut(s)	653
AfaI	GTAC	4 cut(s)	333, 354, 465, 570
AfiI	CCNNNNNNNGG	2 cut(s)	230, 832
AgsI	TTSAA	6 cut(s)	38, 170, 244, 329, 360, 508
AluBI	AGCT	5 cut(s)	275, 303, 388, 415, 637
AluI	AGCT	5 cut(s)	275, 303, 388, 415, 637
Alw26I	GTCTC	1 cut(s)	550
AlwI	GGATC	1 cut(s)	838
Ama87I	CYCGRG	4 cut(s)	29, 348, 591, 825
ApeKI	GCWGC	4 cut(s)	11, 440, 561, 578
ApoI	RAATTY	1 cut(s)	774
Asp718I	GGTACC	1 cut(s)	568
AspS9I	GGNCC	1 cut(s)	499
AsuC2I	CCSGG	2 cut(s)	826, 827
AsuHPI	GGTGA	1 cut(s)	160
AvaI	CYCGRG	4 cut(s)	29, 348, 591, 825
AvaII	GGWCC	1 cut(s)	499
BanI	GGYRCC	1 cut(s)	568
BbsI	GAAGAC	2 cut(s)	192, 515
BbvCI	CCTCAGC	1 cut(s)	299
BbvI	GCAGC	3 cut(s)	427, 573, 590
BccI	CCATC	3 cut(s)	58, 530, 703
BceAI	ACGGC	1 cut(s)	269
BcnI	CCSGG	2 cut(s)	826, 827
BcoDI	GTCTC	1 cut(s)	550
BfaI	CTAG	3 cut(s)	74, 272, 874
BfmI	CTRYAG	2 cut(s)	22, 158
BfuAI	ACCTGC	1 cut(s)	487
BglII	AGATCT	1 cut(s)	642
BisI	GCNGC	4 cut(s)	12, 441, 562, 579
BlpI	GCTNAGC	1 cut(s)	665
BlsI	GCNGC	4 cut(s)	13, 442, 563, 580
BmcAI	AGTACT	1 cut(s)	333
Bme1390I	CCNGG	2 cut(s)	826, 827
Bme18I	GGWCC	1 cut(s)	499
BmeT110I	CYCGRG	4 cut(s)	29, 348, 591, 825
BmgT120I	GGNCC	1 cut(s)	499
BmiI	GGNNCC	2 cut(s)	458, 570
BmrFI	CCNGG	2 cut(s)	826, 827
BmrI	ACTGGG	1 cut(s)	455
BmuI	ACTGGG	1 cut(s)	455
BpiI	GAAGAC	2 cut(s)	192, 515
BplI	GAGNNNNNCTC	1 cut(s)	850
BpmI	CTGGAG	1 cut(s)	659
Bpu10I	CCTNAGC	1 cut(s)	299
Bpu1102I	GCTNAGC	1 cut(s)	665
BpuEI	CTTGAG	2 cut(s)	405, 631
BpuMI	CCSGG	2 cut(s)	826, 827
BsaJI	CCNNGG	3 cut(s)	229, 825, 826
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 832
Bse1I	ACTGG	3 cut(s)	150, 461, 850
Bse3DI	GCAATG	1 cut(s)	210
BseDI	CCNNGG	3 cut(s)	229, 825, 826
BseGI	GGATG	1 cut(s)	13
BseLI	CCNNNNNNNGG	2 cut(s)	230, 832
BseMI	GCAATG	1 cut(s)	210
BseMII	CTCAG	3 cut(s)	313, 543, 656
BseNI	ACTGG	3 cut(s)	150, 461, 850
BseRI	GAGGAG	1 cut(s)	628
BseXI	GCAGC	3 cut(s)	427, 573, 590
BsgI	GTGCAG	3 cut(s)	426, 498, 597
BshNI	GGYRCC	1 cut(s)	568
BsiHKCI	CYCGRG	4 cut(s)	29, 348, 591, 825
BsiSI	CCGG	1 cut(s)	826
BslFI	GGGAC	2 cut(s)	571, 808
BslI	CCNNNNNNNGG	2 cut(s)	230, 832
BsmAI	GTCTC	1 cut(s)	550
BsmFI	GGGAC	2 cut(s)	571, 808
BsmI	GAATGC	1 cut(s)	383
BsoBI	CYCGRG	4 cut(s)	29, 348, 591, 825
Bsp143I	GATC	3 cut(s)	451, 642, 830
Bsp1720I	GCTNAGC	1 cut(s)	665
Bsp19I	CCATGG	1 cut(s)	229
BspACI	CCGC	2 cut(s)	163, 564
BspCNI	CTCAG	3 cut(s)	312, 542, 657
BspLI	GGNNCC	2 cut(s)	458, 570
BspMAI	CTGCAG	1 cut(s)	26
BspMI	ACCTGC	1 cut(s)	487
BspPI	GGATC	1 cut(s)	838
BspT107I	GGYRCC	1 cut(s)	568
BsrDI	GCAATG	1 cut(s)	210
BsrI	ACTGG	3 cut(s)	150, 461, 850
BssECI	CCNNGG	3 cut(s)	229, 825, 826
BssMI	GATC	3 cut(s)	451, 642, 830
BssT1I	CCWWGG	1 cut(s)	229
Bst4CI	ACNGT	7 cut(s)	93, 117, 133, 191, 407, 475, 519
BstC8I	GCNNGC	4 cut(s)	22, 26, 305, 430
BstDEI	CTNAG	4 cut(s)	299, 529, 665, 753
BstDSI	CCRYGG	1 cut(s)	229
BstF5I	GGATG	1 cut(s)	13
BstKTI	GATC	3 cut(s)	454, 645, 833
BstMAI	GTCTC	1 cut(s)	550
BstMBI	GATC	3 cut(s)	451, 642, 830
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 281
BstSCI	CCNGG	2 cut(s)	824, 825
BstSFI	CTRYAG	2 cut(s)	22, 158
BstV1I	GCAGC	3 cut(s)	427, 573, 590
BstV2I	GAAGAC	2 cut(s)	192, 515
BstX2I	RGATCY	1 cut(s)	642
BstYI	RGATCY	1 cut(s)	642
BtgI	CCRYGG	1 cut(s)	229
BtsCI	GGATG	1 cut(s)	13
BtsIMutI	CAGTG	3 cut(s)	113, 480, 515
BveI	ACCTGC	1 cut(s)	487
Cac8I	GCNNGC	4 cut(s)	22, 26, 305, 430
Cfr13I	GGNCC	1 cut(s)	499
Cfr9I	CCCGGG	1 cut(s)	825
Csp6I	GTAC	4 cut(s)	332, 353, 464, 569
CviAII	CATG	3 cut(s)	230, 437, 583
CviQI	GTAC	4 cut(s)	332, 353, 464, 569
DdeI	CTNAG	4 cut(s)	299, 529, 665, 753
DpnI	GATC	3 cut(s)	453, 644, 832
DpnII	GATC	3 cut(s)	451, 642, 830
DrdI	GACNNNNNNGTC	1 cut(s)	517
DseDI	GACNNNNNNGTC	1 cut(s)	517
Eco130I	CCWWGG	1 cut(s)	229
Eco32I	GATATC	1 cut(s)	82
Eco47I	GGWCC	1 cut(s)	499
Eco57I	CTGAAG	1 cut(s)	653
Eco88I	CYCGRG	4 cut(s)	29, 348, 591, 825
EcoRV	GATATC	1 cut(s)	82
EcoT14I	CCWWGG	1 cut(s)	229
ErhI	CCWWGG	1 cut(s)	229
FaeI	CATG	3 cut(s)	233, 440, 586
FaqI	GGGAC	2 cut(s)	571, 808
FatI	CATG	3 cut(s)	229, 436, 582
FauI	CCCGC	1 cut(s)	557
Fnu4HI	GCNGC	4 cut(s)	12, 441, 562, 579
FokI	GGATG	1 cut(s)	20
Fsp4HI	GCNGC	4 cut(s)	12, 441, 562, 579
FspBI	CTAG	3 cut(s)	74, 272, 874
GluI	GCNGC	4 cut(s)	12, 441, 562, 579
GsuI	CTGGAG	1 cut(s)	659
HapII	CCGG	1 cut(s)	826
Hin1II	CATG	3 cut(s)	233, 440, 586
HinfI	GANTC	2 cut(s)	200, 263
HpaII	CCGG	1 cut(s)	826
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	3 cut(s)	113, 151, 800
Hpy188I	TCNGA	4 cut(s)	205, 225, 503, 835
Hpy188III	TCNNGA	7 cut(s)	31, 287, 422, 522, 531, 648, 739
Hpy8I	GTNNAC	3 cut(s)	113, 151, 800
HpyAV	CCTTC	1 cut(s)	200
HpyCH4III	ACNGT	7 cut(s)	93, 117, 133, 191, 407, 475, 519
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 281
HpyF3I	CTNAG	4 cut(s)	299, 529, 665, 753
Hsp92II	CATG	3 cut(s)	233, 440, 586
KpnI	GGTACC	1 cut(s)	572
Kzo9I	GATC	3 cut(s)	451, 642, 830
LmnI	GCTCC	2 cut(s)	289, 462
Lsp1109I	GCAGC	3 cut(s)	427, 573, 590
MaeI	CTAG	3 cut(s)	74, 272, 874
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	3 cut(s)	453, 644, 832
MboI	GATC	3 cut(s)	451, 642, 830
MboII	GAAGA	6 cut(s)	182, 185, 188, 191, 197, 520
MfeI	CAATTG	1 cut(s)	15
MflI	RGATCY	1 cut(s)	642
MluCI	AATT	4 cut(s)	15, 217, 279, 774
MlyI	GAGTC	2 cut(s)	209, 257
MmeI	TCCRAC	4 cut(s)	39, 183, 229, 654
MnlI	CCTC	9 cut(s)	36, 308, 471, 606, 654, 754, 788, 829, 852
MspA1I	CMGCKG	2 cut(s)	163, 564
MspI	CCGG	1 cut(s)	826
MspR9I	CCNGG	2 cut(s)	826, 827
MunI	CAATTG	1 cut(s)	15
Mva1269I	GAATGC	1 cut(s)	383
MwoI	GCNNNNNNNGC	2 cut(s)	17, 281
NciI	CCSGG	2 cut(s)	826, 827
NcoI	CCATGG	1 cut(s)	229
NdeII	GATC	3 cut(s)	451, 642, 830
NlaIII	CATG	3 cut(s)	233, 440, 586
NlaIV	GGNNCC	2 cut(s)	458, 570
PaeR7I	CTCGAG	2 cut(s)	29, 348
PctI	GAATGC	1 cut(s)	383
PkrI	GCNGC	4 cut(s)	13, 442, 563, 580
PleI	GAGTC	2 cut(s)	208, 257
PpsI	GAGTC	2 cut(s)	208, 257
PspN4I	GGNNCC	2 cut(s)	458, 570
PspPI	GGNCC	1 cut(s)	499
PspXI	VCTCGAGB	1 cut(s)	348
PstI	CTGCAG	1 cut(s)	26
PsuI	RGATCY	1 cut(s)	642
RsaI	GTAC	4 cut(s)	333, 354, 465, 570
RsaNI	GTAC	4 cut(s)	332, 353, 464, 569
SatI	GCNGC	4 cut(s)	12, 441, 562, 579
Sau3AI	GATC	3 cut(s)	451, 642, 830
Sau96I	GGNCC	1 cut(s)	499
SbfI	CCTGCAGG	1 cut(s)	26
ScaI	AGTACT	1 cut(s)	333
SchI	GAGTC	2 cut(s)	209, 257
ScrFI	CCNGG	2 cut(s)	826, 827
SdaI	CCTGCAGG	1 cut(s)	26
SfcI	CTRYAG	2 cut(s)	22, 158
Sfr274I	CTCGAG	2 cut(s)	29, 348
SinI	GGWCC	1 cut(s)	499
SlaI	CTCGAG	2 cut(s)	29, 348
SmaI	CCCGGG	1 cut(s)	827
SmlI	CTYRAG	4 cut(s)	29, 348, 420, 646
SmoI	CTYRAG	4 cut(s)	29, 348, 420, 646
Sse8387I	CCTGCAGG	1 cut(s)	26
Sse9I	AATT	4 cut(s)	15, 217, 279, 774
SsiI	CCGC	2 cut(s)	163, 564
SspMI	CTAG	3 cut(s)	74, 272, 874
StyD4I	CCNGG	2 cut(s)	824, 825
StyI	CCWWGG	1 cut(s)	229
TaaI	ACNGT	7 cut(s)	93, 117, 133, 191, 407, 475, 519
TaqI	TCGA	5 cut(s)	30, 139, 349, 492, 812
TasI	AATT	4 cut(s)	15, 217, 279, 774
TatI	WGTACW	3 cut(s)	331, 352, 463
TscAI	CASTG	3 cut(s)	120, 480, 522
TseI	GCWGC	4 cut(s)	11, 440, 561, 578
TspDTI	ATGAA	5 cut(s)	125, 198, 225, 597, 710
TspMI	CCCGGG	1 cut(s)	825
TspRI	CASTG	3 cut(s)	120, 480, 522
VpaK11BI	GGWCC	1 cut(s)	499
XapI	RAATTY	1 cut(s)	774
XhoI	CTCGAG	2 cut(s)	29, 348
XmaI	CCCGGG	1 cut(s)	825
XspI	CTAG	3 cut(s)	74, 272, 874
ZrmI	AGTACT	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.