Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007096

Physical Location & Seq

Genomic Coordinates Reverse (-)

2666063 .. 2667560

Gene Structure 1498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G08780.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGACGATCTCTCTCTAGAGAAAATCGAGATTTCGGGTCCAACATTGGCGTCACTGATTCAACGAGCTTCATCTTCTCCCAGTGACGTCGATGGCTTGATCTTCGGCCAAATCCACCGAATCGTCTCTTCTAATCTATCCGACGATTCTCCGGCGGATATCGCCTCGAGTTCCTCCTCATCTGATCAAATTGTCGCCACCGTTACAAGCTTTATCTGCTCTGGTAAAACTGTCTCCTTCTACGATCCGCTTGGCCGAGTTGACTCGCGTCGAATCGATTCCCTCCGAGTCGACTCACCGGACCACCTAATTGGGTGGTTCTCCGCCCGCAGGAAAACCGCTAACCGTCCATCAATGAGAGAGTTAGCCGTCACGTCGTCTCTCTCGTCTCAATTTCACTTACCAATCGAGGATTTGCAAAACCCTAGATCGATGAACATGGCTTCATCCGTGTTCTTTCTTCTTACTATGCCATTGACGGATCAGTGCATTCACACGCACGAGTACCGTGCGTACCAGTTCCGATCCTCGAAACAACGGCTCGAACCTAGATCCGTTGGTATAGTCAACATTGGACCAGCGTTTCGAGGCCATTACGGTTCGTTTAGTCCGAAATCGGGATTTCCACCGTTGATCTGCGAGTTGAGTAGCTCAGCCATGAGCGTGGATTGCGATGAGAGTTCCTTGAGTGCGAAGAAACAATCAGCGAAAGATCAGAAGGAGATCGATGCGTTAGCAGAGGGGTTTCAAGTTGGAGAGTTGAAACGTTTGGTTGGAGCTGAAGCTGCGAATTACACAGGCGGGATTGAAGAAATGTATGAGAGAATGCTGGCGAAGATCGAGAGCTTGGCTTCTGATGTTGAGAAGAGCTCGGCTAGGGTATTTCAACAGGAAAAGCATAATAGGAAGTTGAGAAACCGAGTAGCCAGAATCGGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

313

Amino Acids

34.49

Weight (kDa)

7.06

Isoelectric Point (pI)

60.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MPN_2A_DUB_like	PF21125	11 - 192	2.3e-12	BRCA1-A complex subunit Abraxas 1 MPN domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08780 AT3G08780
fragaria_vesca	FvH4_6g10650 FvH4_6g10650 FvH4_6g10650 FvH4_6g10650
malus_domestica	MD04G1166100.v1.1 MD04G1166200.v1.1
prunus_persica	Prupe.6G284500_v2.0.a1
pyrus_communis	pycom04g14770
rosa_chinensis	RchiOBHm_Chr3g0461671
rosa_laevigata	RLG00000024906 RLG00000024907
rosa_multiflora	Rmu_sc0012406.1_g000006 Rmu_sc0038320.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332550 Rroxscaffold_6G00418050
rosa_rugosa	Rorug03G0052800 Rorug03G0052900 Rorug03G0053000 Rorug03G0053000
rosa_samantha	Rh3BG114100 Rh3CG116200 Rh3DG116000
rosa_wichuraiana	Rw3G009400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	90
AccI	GTMKAC	1 cut(s)	291
AccII	CGCG	1 cut(s)	268
AciI	CCGC	6 cut(s)	155, 248, 324, 328, 339, 801
AclI	AACGTT	1 cut(s)	766
AclWI	GGATC	4 cut(s)	239, 489, 519, 546
AcoI	YGGCCR	2 cut(s)	106, 253
AcuI	CTGAAG	1 cut(s)	801
AcyI	GRCGYC	2 cut(s)	50, 87
AfaI	GTAC	2 cut(s)	506, 515
AfiI	CCNNNNNNNGG	3 cut(s)	330, 617, 933
AgsI	TTSAA	5 cut(s)	62, 749, 763, 809, 887
AjiI	CACGTC	1 cut(s)	375
AluBI	AGCT	7 cut(s)	68, 210, 651, 779, 785, 846, 870
AluI	AGCT	7 cut(s)	68, 210, 651, 779, 785, 846, 870
Alw21I	GWGCWC	1 cut(s)	872
Alw26I	GTCTC	4 cut(s)	130, 238, 384, 393
AlwI	GGATC	4 cut(s)	239, 489, 519, 546
Ama87I	CYCGRG	1 cut(s)	166
AoxI	GGCC	3 cut(s)	106, 253, 589
ApeKI	GCWGC	1 cut(s)	785
ArsI	GACNNNNNNTTYG	2 cut(s)	567, 599
Asp700I	GAANNNNTTC	1 cut(s)	277
AspS9I	GGNCC	3 cut(s)	38, 301, 575
AsuHPI	GGTGA	1 cut(s)	288
AvaI	CYCGRG	1 cut(s)	166
AvaII	GGWCC	3 cut(s)	38, 301, 575
BanII	GRGCYC	1 cut(s)	872
BauI	CACGAG	1 cut(s)	500
Bbv12I	GWGCWC	1 cut(s)	872
BbvI	GCAGC	1 cut(s)	772
BccI	CCATC	2 cut(s)	86, 358
BceAI	ACGGC	2 cut(s)	353, 554
BcgI	CGANNNNNNTGC	2 cut(s)	491, 525
BclI	TGATCA	1 cut(s)	184
BcoDI	GTCTC	4 cut(s)	130, 238, 384, 393
BfaI	CTAG	4 cut(s)	17, 426, 549, 876
BisI	GCNGC	1 cut(s)	786
BlpI	GCTNAGC	1 cut(s)	652
BlsI	GCNGC	1 cut(s)	787
Bme18I	GGWCC	3 cut(s)	38, 301, 575
BmeT110I	CYCGRG	1 cut(s)	166
BmgBI	CACGTC	1 cut(s)	375
BmgT120I	GGNCC	3 cut(s)	38, 301, 575
BmiI	GGNNCC	1 cut(s)	39
BmrI	ACTGGG	1 cut(s)	75
BmsI	GCATC	1 cut(s)	718
BmuI	ACTGGG	1 cut(s)	75
BoxI	GACNNNNGTC	1 cut(s)	267
BplI	GAGNNNNNCTC	2 cut(s)	854, 886
Bpu1102I	GCTNAGC	1 cut(s)	652
BpuEI	CTTGAG	1 cut(s)	706
Bsa29I	ATCGAT	3 cut(s)	276, 431, 726
BsaHI	GRCGYC	2 cut(s)	50, 87
BsaWI	WCCGGW	1 cut(s)	298
Bsc4I	CCNNNNNNNGG	3 cut(s)	330, 617, 933
Bse1I	ACTGG	2 cut(s)	81, 517
BseCI	ATCGAT	3 cut(s)	276, 431, 726
BseGI	GGATG	1 cut(s)	446
BseLI	CCNNNNNNNGG	3 cut(s)	330, 617, 933
BseMII	CTCAG	1 cut(s)	666
BseNI	ACTGG	2 cut(s)	81, 517
BseRI	GAGGAG	1 cut(s)	166
BseXI	GCAGC	1 cut(s)	772
Bsh1236I	CGCG	1 cut(s)	268
BshFI	GGCC	3 cut(s)	108, 255, 591
BshVI	ATCGAT	3 cut(s)	276, 431, 726
BsiHKAI	GWGCWC	1 cut(s)	872
BsiHKCI	CYCGRG	1 cut(s)	166
BsiSI	CCGG	2 cut(s)	152, 299
BslI	CCNNNNNNNGG	3 cut(s)	330, 617, 933
BsmAI	GTCTC	4 cut(s)	130, 238, 384, 393
BsmBI	CGTCTC	3 cut(s)	130, 384, 393
BsmI	GAATGC	2 cut(s)	489, 831
BsnI	GGCC	3 cut(s)	108, 255, 591
BsoBI	CYCGRG	1 cut(s)	166
Bsp1286I	GDGCHC	1 cut(s)	872
Bsp1720I	GCTNAGC	1 cut(s)	652
BspACI	CCGC	6 cut(s)	155, 248, 324, 328, 339, 801
BspANI	GGCC	3 cut(s)	108, 255, 591
BspCNI	CTCAG	1 cut(s)	665
BspDI	ATCGAT	3 cut(s)	276, 431, 726
BspFNI	CGCG	1 cut(s)	268
BspLI	GGNNCC	1 cut(s)	39
BspPI	GGATC	4 cut(s)	239, 489, 519, 546
BspQI	GCTCTTC	1 cut(s)	860
BsrI	ACTGG	2 cut(s)	81, 517
BssNI	GRCGYC	2 cut(s)	50, 87
BssSI	CACGAG	1 cut(s)	500
Bst2BI	CACGAG	1 cut(s)	500
Bst4CI	ACNGT	6 cut(s)	202, 232, 347, 509, 599, 630
Bst6I	CTCTTC	2 cut(s)	133, 860
BstACI	GRCGYC	2 cut(s)	50, 87
BstC8I	GCNNGC	2 cut(s)	328, 831
BstDEI	CTNAG	1 cut(s)	652
BstF5I	GGATG	1 cut(s)	446
BstFNI	CGCG	1 cut(s)	268
BstMAI	GTCTC	4 cut(s)	130, 238, 384, 393
BstMWI	GCNNNNNNNGC	4 cut(s)	161, 216, 669, 785
BstPAI	GACNNNNGTC	1 cut(s)	267
BstUI	CGCG	1 cut(s)	268
BstV1I	GCAGC	1 cut(s)	772
BstX2I	RGATCY	1 cut(s)	551
BstXI	CCANNNNNNTGG	2 cut(s)	311, 664
BstYI	RGATCY	1 cut(s)	551
Bsu15I	ATCGAT	3 cut(s)	276, 431, 726
BsuRI	GGCC	3 cut(s)	108, 255, 591
BsuTUI	ATCGAT	3 cut(s)	276, 431, 726
BtgZI	GCGATG	1 cut(s)	687
BtrI	CACGTC	1 cut(s)	375
BtsCI	GGATG	1 cut(s)	446
BtsIMutI	CAGTG	3 cut(s)	53, 88, 491
Cac8I	GCNNGC	2 cut(s)	328, 831
Cfr13I	GGNCC	3 cut(s)	38, 301, 575
ClaI	ATCGAT	3 cut(s)	276, 431, 726
CseI	GACGC	2 cut(s)	39, 257
Csp6I	GTAC	2 cut(s)	505, 514
CviAII	CATG	2 cut(s)	439, 658
CviQI	GTAC	2 cut(s)	505, 514
DdeI	CTNAG	1 cut(s)	652
EaeI	YGGCCR	2 cut(s)	106, 253
Eam1104I	CTCTTC	2 cut(s)	133, 860
EarI	CTCTTC	2 cut(s)	133, 860
EciI	GGCGGA	2 cut(s)	170, 313
Ecl136II	GAGCTC	1 cut(s)	870
Eco24I	GRGCYC	1 cut(s)	872
Eco32I	GATATC	1 cut(s)	160
Eco47I	GGWCC	3 cut(s)	38, 301, 575
Eco53kI	GAGCTC	1 cut(s)	870
Eco57I	CTGAAG	1 cut(s)	801
Eco88I	CYCGRG	1 cut(s)	166
EcoICRI	GAGCTC	1 cut(s)	870
EcoRV	GATATC	1 cut(s)	160
EcoT38I	GRGCYC	1 cut(s)	872
Esp3I	CGTCTC	3 cut(s)	130, 384, 393
FaeI	CATG	2 cut(s)	442, 661
FaiI	YATR	6 cut(s)	440, 470, 563, 659, 819, 900
FatI	CATG	2 cut(s)	438, 657
FauI	CCCGC	2 cut(s)	335, 794
FbaI	TGATCA	1 cut(s)	184
FblI	GTMKAC	1 cut(s)	291
Fnu4HI	GCNGC	1 cut(s)	786
FokI	GGATG	1 cut(s)	433
FriOI	GRGCYC	1 cut(s)	872
Fsp4HI	GCNGC	1 cut(s)	786
FspBI	CTAG	4 cut(s)	17, 426, 549, 876
GluI	GCNGC	1 cut(s)	786
HaeIII	GGCC	3 cut(s)	108, 255, 591
HapII	CCGG	2 cut(s)	152, 299
HgaI	GACGC	2 cut(s)	39, 257
Hin1I	GRCGYC	2 cut(s)	50, 87
Hin1II	CATG	2 cut(s)	442, 661
HincII	GTYRAC	3 cut(s)	262, 292, 568
HindII	GTYRAC	3 cut(s)	262, 292, 568
HindIII	AAGCTT	1 cut(s)	208
HinfI	GANTC	9 cut(s)	58, 120, 146, 263, 273, 278, 288, 293, 930
HpaII	CCGG	2 cut(s)	152, 299
HphI	GGTGA	1 cut(s)	288
Hpy166II	GTNNAC	3 cut(s)	262, 292, 568
Hpy188I	TCNGA	7 cut(s)	142, 184, 287, 524, 612, 717, 856
Hpy188III	TCNNGA	5 cut(s)	17, 28, 618, 841, 934
Hpy8I	GTNNAC	3 cut(s)	262, 292, 568
Hpy99I	CGWCG	4 cut(s)	92, 146, 273, 379
HpyAV	CCTTC	2 cut(s)	247, 712
HpyCH4III	ACNGT	6 cut(s)	202, 232, 347, 509, 599, 630
HpyCH4IV	ACGT	3 cut(s)	87, 374, 766
HpyCH4V	TGCA	2 cut(s)	418, 489
HpyF10VI	GCNNNNNNNGC	4 cut(s)	161, 216, 669, 785
HpyF3I	CTNAG	1 cut(s)	652
HpySE526I	ACGT	3 cut(s)	87, 374, 766
Hsp92I	GRCGYC	2 cut(s)	50, 87
Hsp92II	CATG	2 cut(s)	442, 661
Ksp22I	TGATCA	1 cut(s)	184
LguI	GCTCTTC	1 cut(s)	860
LmnI	GCTCC	1 cut(s)	776
Lsp1109I	GCAGC	1 cut(s)	772
LweI	GCATC	1 cut(s)	718
MaeI	CTAG	4 cut(s)	17, 426, 549, 876
MaeII	ACGT	3 cut(s)	87, 374, 766
MaeIII	GTNAC	4 cut(s)	51, 83, 202, 370
MboII	GAAGA	8 cut(s)	66, 94, 120, 452, 706, 821, 847, 877
MflI	RGATCY	1 cut(s)	551
MhlI	GDGCHC	1 cut(s)	872
MluCI	AATT	4 cut(s)	189, 309, 392, 790
MlyI	GAGTC	3 cut(s)	257, 287, 297
MmeI	TCCRAC	4 cut(s)	65, 165, 733, 754
MnlI	CCTC	8 cut(s)	175, 184, 187, 293, 403, 538, 581, 733
MroXI	GAANNNNTTC	1 cut(s)	277
MslI	CAYNNNNRTG	1 cut(s)	662
MspI	CCGG	2 cut(s)	152, 299
Mva1269I	GAATGC	2 cut(s)	489, 831
MvnI	CGCG	1 cut(s)	268
MwoI	GCNNNNNNNGC	4 cut(s)	161, 216, 669, 785
NlaIII	CATG	2 cut(s)	442, 661
NlaIV	GGNNCC	1 cut(s)	39
NmeAIII	GCCGAG	2 cut(s)	281, 851
NmuCI	GTSAC	3 cut(s)	51, 83, 370
PaeR7I	CTCGAG	1 cut(s)	166
PciSI	GCTCTTC	1 cut(s)	860
PcsI	WCGNNNNNNNCGW	2 cut(s)	383, 608
PctI	GAATGC	2 cut(s)	489, 831
PdmI	GAANNNNTTC	1 cut(s)	277
PfeI	GAWTC	6 cut(s)	58, 120, 146, 273, 278, 930
PkrI	GCNGC	1 cut(s)	787
PleI	GAGTC	3 cut(s)	257, 287, 296
PpsI	GAGTC	3 cut(s)	257, 287, 296
PshAI	GACNNNNGTC	1 cut(s)	267
Psp124BI	GAGCTC	1 cut(s)	872
Psp1406I	AACGTT	1 cut(s)	766
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	3 cut(s)	38, 301, 575
PspXI	VCTCGAGB	1 cut(s)	166
PsuI	RGATCY	1 cut(s)	551
RsaI	GTAC	2 cut(s)	506, 515
RsaNI	GTAC	2 cut(s)	505, 514
RseI	CAYNNNNRTG	1 cut(s)	662
SacI	GAGCTC	1 cut(s)	872
SalI	GTCGAC	1 cut(s)	290
SapI	GCTCTTC	1 cut(s)	860
SatI	GCNGC	1 cut(s)	786
Sau96I	GGNCC	3 cut(s)	38, 301, 575
SchI	GAGTC	3 cut(s)	257, 287, 297
SduI	GDGCHC	1 cut(s)	872
SfaNI	GCATC	1 cut(s)	718
Sfr274I	CTCGAG	1 cut(s)	166
SinI	GGWCC	3 cut(s)	38, 301, 575
SlaI	CTCGAG	1 cut(s)	166
SmiMI	CAYNNNNRTG	1 cut(s)	662
SmlI	CTYRAG	2 cut(s)	166, 685
SmoI	CTYRAG	2 cut(s)	166, 685
Sse9I	AATT	4 cut(s)	189, 309, 392, 790
SsiI	CCGC	6 cut(s)	155, 248, 324, 328, 339, 801
SspMI	CTAG	4 cut(s)	17, 426, 549, 876
SstI	GAGCTC	1 cut(s)	872
TaaI	ACNGT	6 cut(s)	202, 232, 347, 509, 599, 630
TaiI	ACGT	3 cut(s)	90, 377, 769
TasI	AATT	4 cut(s)	189, 309, 392, 790
TfiI	GAWTC	6 cut(s)	58, 120, 146, 273, 278, 930
TscAI	CASTG	3 cut(s)	60, 88, 491
TseFI	GTSAC	3 cut(s)	51, 83, 370
TseI	GCWGC	1 cut(s)	785
Tsp45I	GTSAC	3 cut(s)	51, 83, 370
TspDTI	ATGAA	3 cut(s)	60, 435, 449
TspGWI	ACGGA	3 cut(s)	439, 494, 544
TspRI	CASTG	3 cut(s)	60, 88, 491
VpaK11BI	GGWCC	3 cut(s)	38, 301, 575
XbaI	TCTAGA	1 cut(s)	16
XhoI	CTCGAG	1 cut(s)	166
XmiI	GTMKAC	1 cut(s)	291
XmnI	GAANNNNTTC	1 cut(s)	277
XspI	CTAG	4 cut(s)	17, 426, 549, 876
ZraI	GACGTC	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.