Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0007096

Physical Location & Seq

Genomic Coordinates Reverse (-)

66734598 .. 66737632

Gene Structure 3035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00332550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGTTTCTACTCCCGCATGAGCAATTGAGGGCTCTGTTCATGTGCGAAGAAGAGTCAATCTCCGGTTCGGCCCTAGCCTCCATGATCCAACGCTTCTCCACGTCCCGTGACGTCGTCGATGGCATAATCTTCAACCACGTCGCCCTCATCGCCCCCACTCTCTCCTACGACGATTTCTCCTCCTCTTCCTCCTCCACCCTCATCGCCACCGTCACCTCCTTCTTGTGCTCCTCCTCCTCCCTCTCCTTCTACACCCCCTCGGGTCGAGTTGACCCTCTCCTCCTCCTCCGCCTCACCCAACCCCAACCCCCTCTTCCCACCTCCTCGGTGGTTCGCCGCCGCCGCGCGAACCCACCTCCTACCCAAACTTCGAATTCACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

127

Amino Acids

13.86

Weight (kDa)

6.71

Isoelectric Point (pI)

63.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08780 AT3G08780
fragaria_vesca	FvH4_6g10650 FvH4_6g10650 FvH4_6g10650 FvH4_6g10650
malus_domestica	MD04G1166100.v1.1 MD04G1166200.v1.1
prunus_persica	Prupe.6G284500_v2.0.a1
pyrus_communis	pycom04g14770
rosa_chinensis	RchiOBHm_Chr3g0461671
rosa_laevigata	RLG00000024906 RLG00000024907
rosa_multiflora	Rmu_sc0012406.1_g000006 Rmu_sc0038320.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332550 Rroxscaffold_6G00418050
rosa_rugosa	Rorug03G0052800 Rorug03G0052900 Rorug03G0053000 Rorug03G0053000
rosa_samantha	Rh3BG114100 Rh3CG116200 Rh3DG116000
rosa_wichuraiana	Rw3G009400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	114
AccII	CGCG	2 cut(s)	345, 347
AciI	CCGC	5 cut(s)	14, 289, 337, 340, 343
AclWI	GGATC	1 cut(s)	79
AcsI	RAATTY	1 cut(s)	373
AcyI	GRCGYC	1 cut(s)	111
AgsI	TTSAA	1 cut(s)	133
AjiI	CACGTC	2 cut(s)	102, 139
AjuI	GAANNNNNNNTTGG	2 cut(s)	297, 329
Alw21I	GWGCWC	1 cut(s)	230
AlwI	GGATC	1 cut(s)	79
Ama87I	CYCGRG	1 cut(s)	259
AoxI	GGCC	1 cut(s)	69
ApoI	RAATTY	1 cut(s)	373
AspLEI	GCGC	1 cut(s)	347
AspS9I	GGNCC	1 cut(s)	70
AsuHPI	GGTGA	2 cut(s)	205, 286
AsuII	TTCGAA	1 cut(s)	371
AvaI	CYCGRG	1 cut(s)	259
BanII	GRGCYC	1 cut(s)	34
Bbv12I	GWGCWC	1 cut(s)	230
BccI	CCATC	1 cut(s)	113
BfaI	CTAG	1 cut(s)	74
BisI	GCNGC	3 cut(s)	337, 340, 343
BlsI	GCNGC	3 cut(s)	338, 341, 344
BmeT110I	CYCGRG	1 cut(s)	259
BmgBI	CACGTC	2 cut(s)	102, 139
BmgT120I	GGNCC	1 cut(s)	70
BplI	GAGNNNNNCTC	2 cut(s)	44, 76
Bpu14I	TTCGAA	1 cut(s)	371
BsaHI	GRCGYC	1 cut(s)	111
BsaJI	CCNNGG	2 cut(s)	258, 324
BsaWI	WCCGGW	1 cut(s)	62
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
BseDI	CCNNGG	2 cut(s)	258, 324
Bsh1236I	CGCG	2 cut(s)	345, 347
BshFI	GGCC	1 cut(s)	71
BsiHKAI	GWGCWC	1 cut(s)	230
BsiHKCI	CYCGRG	1 cut(s)	259
BsiSI	CCGG	1 cut(s)	63
BslFI	GGGAC	1 cut(s)	88
BsmFI	GGGAC	1 cut(s)	88
BsnI	GGCC	1 cut(s)	71
BsoBI	CYCGRG	1 cut(s)	259
Bsp119I	TTCGAA	1 cut(s)	371
Bsp1286I	GDGCHC	2 cut(s)	34, 230
Bsp143I	GATC	1 cut(s)	84
BspACI	CCGC	5 cut(s)	14, 289, 337, 340, 343
BspANI	GGCC	1 cut(s)	71
BspFNI	CGCG	2 cut(s)	345, 347
BspPI	GGATC	1 cut(s)	79
BspT104I	TTCGAA	1 cut(s)	371
BssECI	CCNNGG	2 cut(s)	258, 324
BssMI	GATC	1 cut(s)	84
BssNI	GRCGYC	1 cut(s)	111
Bst4CI	ACNGT	1 cut(s)	211
Bst6I	CTCTTC	3 cut(s)	45, 190, 318
BstACI	GRCGYC	1 cut(s)	111
BstBI	TTCGAA	1 cut(s)	371
BstFNI	CGCG	2 cut(s)	345, 347
BstHHI	GCGC	1 cut(s)	347
BstKTI	GATC	1 cut(s)	87
BstMBI	GATC	1 cut(s)	84
BstMWI	GCNNNNNNNGC	2 cut(s)	149, 342
BstUI	CGCG	2 cut(s)	345, 347
BsuRI	GGCC	1 cut(s)	71
BtgZI	GCGATG	2 cut(s)	133, 187
BtrI	CACGTC	2 cut(s)	102, 139
CfoI	GCGC	1 cut(s)	347
Cfr13I	GGNCC	1 cut(s)	70
CviAII	CATG	3 cut(s)	17, 40, 82
CviJI	RGCY	3 cut(s)	32, 71, 77
CviKI_1	RGCY	3 cut(s)	32, 71, 77
DpnI	GATC	1 cut(s)	86
DpnII	GATC	1 cut(s)	84
Eam1104I	CTCTTC	3 cut(s)	45, 190, 318
EarI	CTCTTC	3 cut(s)	45, 190, 318
EciI	GGCGGA	1 cut(s)	278
Eco24I	GRGCYC	1 cut(s)	34
Eco88I	CYCGRG	1 cut(s)	259
EcoRI	GAATTC	1 cut(s)	373
EcoT38I	GRGCYC	1 cut(s)	34
FaeI	CATG	3 cut(s)	20, 43, 85
FaiI	YATR	5 cut(s)	18, 41, 83, 125, 382
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	3 cut(s)	16, 39, 81
FauI	CCCGC	1 cut(s)	21
Fnu4HI	GCNGC	3 cut(s)	337, 340, 343
FriOI	GRGCYC	1 cut(s)	34
Fsp4HI	GCNGC	3 cut(s)	337, 340, 343
FspBI	CTAG	1 cut(s)	74
GlaI	GCGC	1 cut(s)	346
GluI	GCNGC	3 cut(s)	337, 340, 343
HaeIII	GGCC	1 cut(s)	71
HapII	CCGG	1 cut(s)	63
HhaI	GCGC	1 cut(s)	347
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	3 cut(s)	20, 43, 85
Hin6I	GCGC	1 cut(s)	345
HinP1I	GCGC	1 cut(s)	345
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HinfI	GANTC	1 cut(s)	53
HpaII	CCGG	1 cut(s)	63
HphI	GGTGA	2 cut(s)	205, 286
Hpy166II	GTNNAC	1 cut(s)	271
Hpy8I	GTNNAC	1 cut(s)	271
Hpy99I	CGWCG	4 cut(s)	116, 119, 143, 173
HpyAV	CCTTC	2 cut(s)	229, 256
HpyCH4III	ACNGT	1 cut(s)	211
HpyCH4IV	ACGT	3 cut(s)	101, 111, 138
HpyF10VI	GCNNNNNNNGC	2 cut(s)	149, 342
HpySE526I	ACGT	3 cut(s)	101, 111, 138
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	3 cut(s)	20, 43, 85
HspAI	GCGC	1 cut(s)	345
Kzo9I	GATC	1 cut(s)	84
LmnI	GCTCC	1 cut(s)	233
LpnPI	CCDG	1 cut(s)	76
MaeI	CTAG	1 cut(s)	74
MaeII	ACGT	3 cut(s)	101, 111, 138
MaeIII	GTNAC	2 cut(s)	107, 211
MalI	GATC	1 cut(s)	86
MboI	GATC	1 cut(s)	84
MboII	GAAGA	5 cut(s)	59, 62, 121, 177, 305
MfeI	CAATTG	1 cut(s)	23
MhlI	GDGCHC	2 cut(s)	34, 230
MluCI	AATT	2 cut(s)	23, 373
MlyI	GAGTC	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	112
MspI	CCGG	1 cut(s)	63
MunI	CAATTG	1 cut(s)	23
MvnI	CGCG	2 cut(s)	345, 347
MwoI	GCNNNNNNNGC	2 cut(s)	149, 342
NdeII	GATC	1 cut(s)	84
NlaIII	CATG	3 cut(s)	20, 43, 85
NmuCI	GTSAC	2 cut(s)	107, 211
NspV	TTCGAA	1 cut(s)	371
PflFI	GACNNNGTC	1 cut(s)	113
PkrI	GCNGC	3 cut(s)	338, 341, 344
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
PspPI	GGNCC	1 cut(s)	70
PsyI	GACNNNGTC	1 cut(s)	113
SatI	GCNGC	3 cut(s)	337, 340, 343
Sau3AI	GATC	1 cut(s)	84
Sau96I	GGNCC	1 cut(s)	70
SchI	GAGTC	1 cut(s)	62
SduI	GDGCHC	2 cut(s)	34, 230
SetI	ASST	6 cut(s)	104, 114, 141, 218, 323, 358
SfuI	TTCGAA	1 cut(s)	371
Sse9I	AATT	2 cut(s)	23, 373
SsiI	CCGC	5 cut(s)	14, 289, 337, 340, 343
SspMI	CTAG	1 cut(s)	74
TaaI	ACNGT	1 cut(s)	211
TaiI	ACGT	3 cut(s)	104, 114, 141
TaqI	TCGA	3 cut(s)	117, 265, 371
TasI	AATT	2 cut(s)	23, 373
TauI	GCSGC	3 cut(s)	339, 342, 345
TseFI	GTSAC	2 cut(s)	107, 211
Tsp45I	GTSAC	2 cut(s)	107, 211
TspDTI	ATGAA	1 cut(s)	28
Tth111I	GACNNNGTC	1 cut(s)	113
XapI	RAATTY	1 cut(s)	373
XcmI	CCANNNNNNNNNTGG	1 cut(s)	325
XspI	CTAG	1 cut(s)	74
ZraI	GACGTC	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.