Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007096

Physical Location & Seq

Genomic Coordinates Reverse (-)

26434049 .. 26435266

Gene Structure 1218 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G284500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGAAGACCCTTCCATCGACAAAGTAGCAATATCAGGGCCAGCCCTAGCCTCCATGATCCAACGCTTCTCAACCTCCCAAGGCTCCGTCGACGGTCTGATCTTCGGCCACGTCAGCCACATCGCCCCCACCCTCACCGACGACTCTCCCAATTCCACCTCCTCCGCCACTCTCATCGCCACCATTACCGGCTTCTTCTGCTCCGGCTCCACCCACTCCTTTTACAACTCCTCCGGCCGGGTCGACCCGGTCCTCCTCCGCCGCCTGGTCCTGGCCCAGGCCCAATCCCCCTCCGCCCACCTCCTCGGCTGGTTCTCCGGCCGCCGCAAAACCCACCTCCGTCCCTCTCTCAGAGAATTCTCAGTCTCCAACGCTCTCTCCTCCAACCCCAATCTCACGTTCCCAATCCAAAACCCTCCAGAAGGCCCCTCCAGCCCTAATCTCGTTCCTTCCCTCTTTCTCCTATTCGCTTCTCCGATCACCGATCAGACCATCCACACCCACGAGTACCGGGCCTACCACTTCCGTGCATCCAAACACTCCTTCGAGCCCAAATCAATTCAAATCGTCAACATTGGGCCGGCGTTTCGAGCCCAGTACGAGAACTTCAGTCCCAACTCGCCTTTTCCCAATTTGCCATTCGAGCTGAGGGTTTCGCCGATGATTGTGGACAGAGGAGAGGAGAATTTGGATCAGTTGAGGCAAGTTAACAAGGACCAGAGCGAGTTGGATATGTGCACTCAGGGGTTGGAGGTTGGGAGCCTCAGTAGGCTAATGGGTTCGGAGGCTGCGAATTACACGACTGGCGTGGAGGATTTGTATGAGAAAATGCTTGTGAAGATTGAAAGCTTGACCACGCTCGTTGAGAAGAGCTCCGCTAACGTTCTTGAGCAGGAAAATCTCAATAGGAAGTTAAGGTACAAAGCTGCAAGGTCTGCTGCGTTGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

317

Amino Acids

34.78

Weight (kDa)

6.32

Isoelectric Point (pI)

54.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08780 AT3G08780
fragaria_vesca	FvH4_6g10650 FvH4_6g10650 FvH4_6g10650 FvH4_6g10650
malus_domestica	MD04G1166100.v1.1 MD04G1166200.v1.1
prunus_persica	Prupe.6G284500_v2.0.a1
pyrus_communis	pycom04g14770
rosa_chinensis	RchiOBHm_Chr3g0461671
rosa_laevigata	RLG00000024906 RLG00000024907
rosa_multiflora	Rmu_sc0012406.1_g000006 Rmu_sc0038320.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332550 Rroxscaffold_6G00418050
rosa_rugosa	Rorug03G0052800 Rorug03G0052900 Rorug03G0053000 Rorug03G0053000
rosa_samantha	Rh3BG114100 Rh3CG116200 Rh3DG116000
rosa_wichuraiana	Rw3G009400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	90, 243
AciI	CCGC	7 cut(s)	165, 259, 262, 294, 322, 325, 876
AclI	AACGTT	1 cut(s)	882
AclWI	GGATC	2 cut(s)	52, 699
AcoI	YGGCCR	3 cut(s)	106, 235, 319
AcsI	RAATTY	2 cut(s)	356, 685
AcuI	CTGAAG	1 cut(s)	592
AfaI	GTAC	3 cut(s)	509, 599, 920
AfiI	CCNNNNNNNGG	5 cut(s)	237, 265, 271, 277, 422
AgsI	TTSAA	2 cut(s)	563, 845
AjiI	CACGTC	1 cut(s)	112
AjnI	CCWGG	3 cut(s)	264, 270, 276
AjuI	GAANNNNNNNTTGG	6 cut(s)	383, 415, 527, 559, 623, 655
AleI	CACNNNNGTG	1 cut(s)	525
AluBI	AGCT	4 cut(s)	646, 849, 873, 926
AluI	AGCT	4 cut(s)	646, 849, 873, 926
Alw21I	GWGCWC	2 cut(s)	740, 875
Alw26I	GTCTC	1 cut(s)	370
Alw44I	GTGCAC	1 cut(s)	736
AlwI	GGATC	2 cut(s)	52, 699
AoxI	GGCC	9 cut(s)	38, 106, 235, 273, 279, 319, 424, 513, 578
ApaLI	GTGCAC	1 cut(s)	736
ApeKI	GCWGC	3 cut(s)	788, 926, 938
ApoI	RAATTY	2 cut(s)	356, 685
AspS9I	GGNCC	9 cut(s)	38, 250, 268, 274, 280, 425, 513, 578, 715
AsuC2I	CCSGG	3 cut(s)	239, 248, 512
AsuHPI	GGTGA	2 cut(s)	127, 472
AvaII	GGWCC	3 cut(s)	250, 268, 715
BaeGI	GKGCMC	1 cut(s)	740
BanII	GRGCYC	3 cut(s)	552, 595, 875
BarI	GAAGNNNNNNTAC	4 cut(s)	590, 622, 902, 934
BauI	CACGAG	1 cut(s)	503
BbsI	GAAGAC	1 cut(s)	12
Bbv12I	GWGCWC	2 cut(s)	740, 875
BbvCI	CCTCAGC	1 cut(s)	647
BbvI	GCAGC	3 cut(s)	775, 913, 925
BccI	CCATC	2 cut(s)	23, 500
BciT130I	CCWGG	3 cut(s)	266, 272, 278
BcnI	CCSGG	3 cut(s)	239, 248, 512
BcoDI	GTCTC	1 cut(s)	370
BfaI	CTAG	1 cut(s)	47
BisI	GCNGC	6 cut(s)	262, 322, 325, 789, 927, 939
BlsI	GCNGC	6 cut(s)	263, 323, 326, 790, 928, 940
Bme1390I	CCNGG	6 cut(s)	239, 248, 266, 272, 278, 512
Bme18I	GGWCC	3 cut(s)	250, 268, 715
BmgBI	CACGTC	1 cut(s)	112
BmgT120I	GGNCC	9 cut(s)	38, 250, 268, 274, 280, 425, 513, 578, 715
BmiI	GGNNCC	4 cut(s)	85, 208, 427, 761
BmrFI	CCNGG	6 cut(s)	239, 248, 266, 272, 278, 512
BmrI	ACTGGG	1 cut(s)	589
BmsI	GCATC	1 cut(s)	539
BmuI	ACTGGG	1 cut(s)	589
BpiI	GAAGAC	1 cut(s)	12
BplI	GAGNNNNNCTC	2 cut(s)	857, 889
BpmI	CTGGAG	2 cut(s)	402, 415
Bpu10I	CCTNAGC	1 cut(s)	647
BpuEI	CTTGAG	1 cut(s)	908
BpuMI	CCSGG	3 cut(s)	239, 248, 512
BsaJI	CCNNGG	3 cut(s)	79, 276, 304
BsaXI	ACNNNNNCTCC	8 cut(s)	215, 245, 362, 392, 751, 781, 803, 833
Bsc4I	CCNNNNNNNGG	5 cut(s)	237, 265, 271, 277, 422
Bse118I	RCCGGY	2 cut(s)	188, 580
Bse1I	ACTGG	2 cut(s)	595, 808
BseBI	CCWGG	3 cut(s)	266, 272, 278
BseDI	CCNNGG	3 cut(s)	79, 276, 304
BseGI	GGATG	2 cut(s)	492, 530
BseLI	CCNNNNNNNGG	5 cut(s)	237, 265, 271, 277, 422
BseMII	CTCAG	5 cut(s)	364, 375, 638, 755, 778
BseNI	ACTGG	2 cut(s)	595, 808
BseRI	GAGGAG	7 cut(s)	151, 220, 245, 293, 370, 690, 695
BseSI	GKGCMC	1 cut(s)	740
BseX3I	CGGCCG	2 cut(s)	235, 319
BseXI	GCAGC	3 cut(s)	775, 913, 925
Bsh1285I	CGRYCG	2 cut(s)	238, 322
BshFI	GGCC	9 cut(s)	40, 108, 237, 275, 281, 321, 426, 515, 580
BsiEI	CGRYCG	2 cut(s)	238, 322
BsiHKAI	GWGCWC	2 cut(s)	740, 875
BsiSI	CCGG	8 cut(s)	189, 204, 234, 238, 248, 318, 511, 581
BslFI	GGGAC	2 cut(s)	327, 597
BslI	CCNNNNNNNGG	5 cut(s)	237, 265, 271, 277, 422
BsmAI	GTCTC	1 cut(s)	370
BsmFI	GGGAC	2 cut(s)	327, 597
BsnI	GGCC	9 cut(s)	40, 108, 237, 275, 281, 321, 426, 515, 580
Bsp1286I	GDGCHC	4 cut(s)	552, 595, 740, 875
Bsp143I	GATC	5 cut(s)	57, 99, 477, 484, 691
BspACI	CCGC	7 cut(s)	165, 259, 262, 294, 322, 325, 876
BspANI	GGCC	9 cut(s)	40, 108, 237, 275, 281, 321, 426, 515, 580
BspCNI	CTCAG	5 cut(s)	363, 374, 639, 754, 777
BspLI	GGNNCC	4 cut(s)	85, 208, 427, 761
BspPI	GGATC	2 cut(s)	52, 699
BspQI	GCTCTTC	1 cut(s)	863
BsrFI	RCCGGY	2 cut(s)	188, 580
BsrI	ACTGG	2 cut(s)	595, 808
BssAI	RCCGGY	2 cut(s)	188, 580
BssECI	CCNNGG	3 cut(s)	79, 276, 304
BssMI	GATC	5 cut(s)	57, 99, 477, 484, 691
BssSI	CACGAG	1 cut(s)	503
BssT1I	CCWWGG	1 cut(s)	79
Bst2BI	CACGAG	1 cut(s)	503
Bst2UI	CCWGG	3 cut(s)	266, 272, 278
Bst4CI	ACNGT	1 cut(s)	95
Bst6I	CTCTTC	1 cut(s)	863
BstAPI	GCANNNNNTGC	1 cut(s)	935
BstC8I	GCNNGC	2 cut(s)	42, 582
BstDEI	CTNAG	5 cut(s)	350, 361, 647, 741, 764
BstENI	CCTNNNNNAGG	2 cut(s)	275, 420
BstF5I	GGATG	2 cut(s)	492, 530
BstKTI	GATC	5 cut(s)	60, 102, 480, 487, 694
BstMAI	GTCTC	1 cut(s)	370
BstMBI	GATC	5 cut(s)	57, 99, 477, 484, 691
BstMCI	CGRYCG	2 cut(s)	238, 322
BstMWI	GCNNNNNNNGC	6 cut(s)	114, 198, 432, 590, 643, 935
BstNI	CCWGG	3 cut(s)	266, 272, 278
BstSCI	CCNGG	6 cut(s)	237, 246, 264, 270, 276, 510
BstSLI	GKGCMC	1 cut(s)	740
BstV1I	GCAGC	3 cut(s)	775, 913, 925
BstV2I	GAAGAC	1 cut(s)	12
BstZI	CGGCCG	2 cut(s)	235, 319
BsuRI	GGCC	9 cut(s)	40, 108, 237, 275, 281, 321, 426, 515, 580
BtgZI	GCGATG	2 cut(s)	106, 160
BtrI	CACGTC	1 cut(s)	112
BtsCI	GGATG	2 cut(s)	492, 530
Cac8I	GCNNGC	2 cut(s)	42, 582
Cfr10I	RCCGGY	2 cut(s)	188, 580
Cfr13I	GGNCC	9 cut(s)	38, 250, 268, 274, 280, 425, 513, 578, 715
Csp6I	GTAC	3 cut(s)	508, 598, 919
CspCI	CAANNNNNGTGG	2 cut(s)	844, 879
CviAII	CATG	1 cut(s)	55
CviQI	GTAC	3 cut(s)	508, 598, 919
DdeI	CTNAG	5 cut(s)	350, 361, 647, 741, 764
DpnI	GATC	5 cut(s)	59, 101, 479, 486, 693
DpnII	GATC	5 cut(s)	57, 99, 477, 484, 691
EaeI	YGGCCR	3 cut(s)	106, 235, 319
EagI	CGGCCG	2 cut(s)	235, 319
Eam1104I	CTCTTC	1 cut(s)	863
EarI	CTCTTC	1 cut(s)	863
EciI	GGCGGA	3 cut(s)	154, 248, 283
Ecl136II	GAGCTC	1 cut(s)	873
EclXI	CGGCCG	2 cut(s)	235, 319
Eco130I	CCWWGG	1 cut(s)	79
Eco24I	GRGCYC	3 cut(s)	552, 595, 875
Eco47I	GGWCC	3 cut(s)	250, 268, 715
Eco52I	CGGCCG	2 cut(s)	235, 319
Eco53kI	GAGCTC	1 cut(s)	873
Eco57I	CTGAAG	1 cut(s)	592
EcoICRI	GAGCTC	1 cut(s)	873
EcoNI	CCTNNNNNAGG	2 cut(s)	275, 420
EcoO109I	RGGNCCY	1 cut(s)	425
EcoRI	GAATTC	1 cut(s)	356
EcoRII	CCWGG	3 cut(s)	264, 270, 276
EcoT14I	CCWWGG	1 cut(s)	79
EcoT38I	GRGCYC	3 cut(s)	552, 595, 875
ErhI	CCWWGG	1 cut(s)	79
FaeI	CATG	1 cut(s)	58
FaiI	YATR	3 cut(s)	56, 734, 822
FaqI	GGGAC	2 cut(s)	327, 597
FatI	CATG	1 cut(s)	54
FblI	GTMKAC	2 cut(s)	90, 243
Fnu4HI	GCNGC	6 cut(s)	262, 322, 325, 789, 927, 939
FokI	GGATG	2 cut(s)	479, 517
FriOI	GRGCYC	3 cut(s)	552, 595, 875
Fsp4HI	GCNGC	6 cut(s)	262, 322, 325, 789, 927, 939
FspBI	CTAG	1 cut(s)	47
GluI	GCNGC	6 cut(s)	262, 322, 325, 789, 927, 939
GsuI	CTGGAG	2 cut(s)	402, 415
HaeIII	GGCC	9 cut(s)	40, 108, 237, 275, 281, 321, 426, 515, 580
HapII	CCGG	8 cut(s)	189, 204, 234, 238, 248, 318, 511, 581
Hin1II	CATG	1 cut(s)	58
HincII	GTYRAC	4 cut(s)	91, 244, 571, 709
HindII	GTYRAC	4 cut(s)	91, 244, 571, 709
HindIII	AAGCTT	1 cut(s)	847
HinfI	GANTC	1 cut(s)	143
HpaI	GTTAAC	1 cut(s)	709
HpaII	CCGG	8 cut(s)	189, 204, 234, 238, 248, 318, 511, 581
HphI	GGTGA	2 cut(s)	127, 472
Hpy166II	GTNNAC	6 cut(s)	91, 244, 571, 670, 709, 738
Hpy188I	TCNGA	5 cut(s)	99, 353, 477, 489, 784
Hpy188III	TCNNGA	2 cut(s)	419, 887
Hpy8I	GTNNAC	6 cut(s)	91, 244, 571, 670, 709, 738
Hpy99I	CGWCG	3 cut(s)	92, 95, 143
HpyAV	CCTTC	4 cut(s)	21, 416, 459, 553
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4IV	ACGT	3 cut(s)	111, 398, 882
HpyCH4V	TGCA	3 cut(s)	530, 738, 929
HpyF10VI	GCNNNNNNNGC	6 cut(s)	114, 198, 432, 590, 643, 935
HpyF3I	CTNAG	5 cut(s)	350, 361, 647, 741, 764
HpySE526I	ACGT	3 cut(s)	111, 398, 882
Hsp92II	CATG	1 cut(s)	58
KroI	GCCGGC	1 cut(s)	580
KroNI	GCCGGC	1 cut(s)	582
KspAI	GTTAAC	1 cut(s)	709
Kzo9I	GATC	5 cut(s)	57, 99, 477, 484, 691
LguI	GCTCTTC	1 cut(s)	863
LmnI	GCTCC	5 cut(s)	89, 206, 212, 759, 878
Lsp1109I	GCAGC	3 cut(s)	775, 913, 925
LweI	GCATC	1 cut(s)	539
MaeI	CTAG	1 cut(s)	47
MaeII	ACGT	3 cut(s)	111, 398, 882
MalI	GATC	5 cut(s)	59, 101, 479, 486, 693
MboI	GATC	5 cut(s)	57, 99, 477, 484, 691
MboII	GAAGA	5 cut(s)	17, 94, 187, 850, 880
MhlI	GDGCHC	4 cut(s)	552, 595, 740, 875
MluCI	AATT	6 cut(s)	151, 356, 558, 631, 685, 793
MlyI	GAGTC	1 cut(s)	137
MmeI	TCCRAC	6 cut(s)	85, 393, 408, 708, 729, 924
MroNI	GCCGGC	1 cut(s)	580
MseI	TTAA	2 cut(s)	708, 914
MslI	CAYNNNNRTG	1 cut(s)	525
MspI	CCGG	8 cut(s)	189, 204, 234, 238, 248, 318, 511, 581
MspR9I	CCNGG	6 cut(s)	239, 248, 266, 272, 278, 512
MvaI	CCWGG	3 cut(s)	266, 272, 278
MwoI	GCNNNNNNNGC	6 cut(s)	114, 198, 432, 590, 643, 935
NaeI	GCCGGC	1 cut(s)	582
NciI	CCSGG	3 cut(s)	239, 248, 512
NdeII	GATC	5 cut(s)	57, 99, 477, 484, 691
NgoMIV	GCCGGC	1 cut(s)	580
NlaIII	CATG	1 cut(s)	58
NlaIV	GGNNCC	4 cut(s)	85, 208, 427, 761
NmeAIII	GCCGAG	1 cut(s)	285
OliI	CACNNNNGTG	1 cut(s)	525
PciSI	GCTCTTC	1 cut(s)	863
PcsI	WCGNNNNNNNCGW	1 cut(s)	788
PdiI	GCCGGC	1 cut(s)	582
PflFI	GACNNNGTC	1 cut(s)	248
PkrI	GCNGC	6 cut(s)	263, 323, 326, 790, 928, 940
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
Psp124BI	GAGCTC	1 cut(s)	875
Psp1406I	AACGTT	1 cut(s)	882
Psp6I	CCWGG	3 cut(s)	264, 270, 276
PspGI	CCWGG	3 cut(s)	264, 270, 276
PspN4I	GGNNCC	4 cut(s)	85, 208, 427, 761
PspPI	GGNCC	9 cut(s)	38, 250, 268, 274, 280, 425, 513, 578, 715
PsyI	GACNNNGTC	1 cut(s)	248
RsaI	GTAC	3 cut(s)	509, 599, 920
RsaNI	GTAC	3 cut(s)	508, 598, 919
RseI	CAYNNNNRTG	1 cut(s)	525
SacI	GAGCTC	1 cut(s)	875
SalI	GTCGAC	2 cut(s)	89, 242
SapI	GCTCTTC	1 cut(s)	863
SaqAI	TTAA	2 cut(s)	708, 914
SatI	GCNGC	6 cut(s)	262, 322, 325, 789, 927, 939
Sau3AI	GATC	5 cut(s)	57, 99, 477, 484, 691
Sau96I	GGNCC	9 cut(s)	38, 250, 268, 274, 280, 425, 513, 578, 715
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	6 cut(s)	239, 248, 266, 272, 278, 512
SduI	GDGCHC	4 cut(s)	552, 595, 740, 875
SfaNI	GCATC	1 cut(s)	539
SgrDI	CGTCGACG	1 cut(s)	89
SinI	GGWCC	3 cut(s)	250, 268, 715
SmiMI	CAYNNNNRTG	1 cut(s)	525
SmlI	CTYRAG	1 cut(s)	887
SmoI	CTYRAG	1 cut(s)	887
Sse9I	AATT	6 cut(s)	151, 356, 558, 631, 685, 793
SsiI	CCGC	7 cut(s)	165, 259, 262, 294, 322, 325, 876
SspMI	CTAG	1 cut(s)	47
SstI	GAGCTC	1 cut(s)	875
StyD4I	CCNGG	6 cut(s)	237, 246, 264, 270, 276, 510
StyI	CCWWGG	1 cut(s)	79
TaaI	ACNGT	1 cut(s)	95
TaiI	ACGT	3 cut(s)	114, 401, 885
TaqI	TCGA	6 cut(s)	18, 90, 243, 546, 589, 642
TasI	AATT	6 cut(s)	151, 356, 558, 631, 685, 793
TauI	GCSGC	3 cut(s)	264, 324, 327
Tru1I	TTAA	2 cut(s)	708, 914
Tru9I	TTAA	2 cut(s)	708, 914
TseI	GCWGC	3 cut(s)	788, 926, 938
TspGWI	ACGGA	3 cut(s)	76, 329, 515
Tth111I	GACNNNGTC	1 cut(s)	248
VneI	GTGCAC	1 cut(s)	736
VpaK11BI	GGWCC	3 cut(s)	250, 268, 715
XagI	CCTNNNNNAGG	2 cut(s)	275, 420
XapI	RAATTY	2 cut(s)	356, 685
XmiI	GTMKAC	2 cut(s)	90, 243
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.