Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0007096

Physical Location & Seq

Genomic Coordinates Reverse (-)

25669124 .. 25669934

Gene Structure 811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1166200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGAAGACCATTCCCTAGACAAGGTGGCGATGTCAGGCCCAGCCCTGGCCTCCATGATCCAACGCTTCTCCACCTCCCCAGGCTCCGTCGACGGCCTGATCTTCGGCCATGTCAGCCACATCCCCCCTACCCTCACCGACGACTCTCCCAATTCCACCTCCTCCGCCACTCTCATCGCCACCGTCACCGCCTTCTTCTGCTCCGGCTCCACCCTCTCCTTCTACAACTCCTCCGGCCGGGTCGACCCCCTCTCCCTCCGCCGCTTCGTCCAAGCCCAGCAGGCCCAATCCCCCTCCTCCCACCTACTCGGCTGGTTCTCCGGCCGCCGCAGAACCCACCTCCGCCCCTCCCTCCGAGAATTCTCAGTCTCCAACTCTCTCTCCTCCAACCCCACTCTCAACTTCCCAATCCAAAACCCTCCCGAGGGCTCCCCCGCCACCCCAACTCTCACCCCCTCCCTCTTTCTCCTCTTCGCTTCTCCGGCTTCAATCAGACGATCCACACTCATGAGTACCGGGCCTACCAGTTCCGGCCATCCAAGCACTCCTTCGAGCCGAAATCGATCCAGATCGTCAACATTGGGCCCGCGTTCCGAGCCCATTACGGGAATTTCAACCCTAGCTCGCCGTTCCCAATTTTGCCCTGCGAGCTTAGGGTTTCGCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

223

Amino Acids

23.72

Weight (kDa)

11.56

Isoelectric Point (pI)

78.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MPN_2A_DUB_like	PF21125	11 - 127	1.4e-08	BRCA1-A complex subunit Abraxas 1 MPN domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08780 AT3G08780
fragaria_vesca	FvH4_6g10650 FvH4_6g10650 FvH4_6g10650 FvH4_6g10650
malus_domestica	MD04G1166100.v1.1 MD04G1166200.v1.1
prunus_persica	Prupe.6G284500_v2.0.a1
pyrus_communis	pycom04g14770
rosa_chinensis	RchiOBHm_Chr3g0461671
rosa_laevigata	RLG00000024906 RLG00000024907
rosa_multiflora	Rmu_sc0012406.1_g000006 Rmu_sc0038320.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332550 Rroxscaffold_6G00418050
rosa_rugosa	Rorug03G0052800 Rorug03G0052900 Rorug03G0053000 Rorug03G0053000
rosa_samantha	Rh3BG114100 Rh3CG116200 Rh3DG116000
rosa_wichuraiana	Rw3G009400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	90, 243
AccII	CGCG	1 cut(s)	589
AciI	CCGC	9 cut(s)	165, 189, 259, 262, 325, 328, 343, 435, 587
AclWI	GGATC	3 cut(s)	52, 492, 558
AcoI	YGGCCR	4 cut(s)	106, 235, 322, 532
AcsI	RAATTY	2 cut(s)	359, 609
AfaI	GTAC	1 cut(s)	514
AfiI	CCNNNNNNNGG	6 cut(s)	22, 46, 237, 424, 425, 605
AgsI	TTSAA	2 cut(s)	489, 615
AjnI	CCWGG	2 cut(s)	45, 79
AjuI	GAANNNNNNNTTGG	2 cut(s)	532, 564
AluBI	AGCT	2 cut(s)	623, 651
AluI	AGCT	2 cut(s)	623, 651
Alw26I	GTCTC	1 cut(s)	373
AlwI	GGATC	3 cut(s)	52, 492, 558
Ama87I	CYCGRG	1 cut(s)	422
ApaI	GGGCCC	1 cut(s)	587
ApoI	RAATTY	2 cut(s)	359, 609
AspS9I	GGNCC	5 cut(s)	38, 283, 518, 583, 584
AsuC2I	CCSGG	2 cut(s)	239, 517
AsuHPI	GGTGA	3 cut(s)	127, 178, 442
AvaI	CYCGRG	1 cut(s)	422
BaeGI	GKGCMC	1 cut(s)	587
BanII	GRGCYC	3 cut(s)	431, 587, 600
BbsI	GAAGAC	1 cut(s)	12
BccI	CCATC	1 cut(s)	543
BceAI	ACGGC	2 cut(s)	109, 612
BciT130I	CCWGG	2 cut(s)	47, 81
BcnI	CCSGG	2 cut(s)	239, 517
BcoDI	GTCTC	1 cut(s)	373
BfaI	CTAG	2 cut(s)	17, 620
BglI	GCCNNNNNGGC	1 cut(s)	281
BisI	GCNGC	3 cut(s)	262, 325, 328
BlsI	GCNGC	3 cut(s)	263, 326, 329
Bme1390I	CCNGG	4 cut(s)	47, 81, 239, 517
BmeT110I	CYCGRG	1 cut(s)	422
BmgT120I	GGNCC	5 cut(s)	38, 283, 518, 583, 584
BmiI	GGNNCC	4 cut(s)	85, 208, 430, 585
BmrFI	CCNGG	4 cut(s)	47, 81, 239, 517
BpiI	GAAGAC	1 cut(s)	12
Bpu10I	CCTNAGC	1 cut(s)	652
BpuMI	CCSGG	2 cut(s)	239, 517
Bsa29I	ATCGAT	1 cut(s)	562
BsaBI	GATNNNNATC	1 cut(s)	568
BsaJI	CCNNGG	3 cut(s)	45, 79, 423
BsaXI	ACNNNNNCTCC	6 cut(s)	215, 236, 245, 266, 365, 395
Bsc4I	CCNNNNNNNGG	6 cut(s)	22, 46, 237, 424, 425, 605
Bse1I	ACTGG	1 cut(s)	525
Bse8I	GATNNNNATC	1 cut(s)	568
BseBI	CCWGG	2 cut(s)	47, 81
BseCI	ATCGAT	1 cut(s)	562
BseDI	CCNNGG	3 cut(s)	45, 79, 423
BseGI	GGATG	2 cut(s)	120, 535
BseJI	GATNNNNATC	1 cut(s)	568
BseLI	CCNNNNNNNGG	6 cut(s)	22, 46, 237, 424, 425, 605
BseMII	CTCAG	1 cut(s)	378
BseNI	ACTGG	1 cut(s)	525
BseRI	GAGGAG	5 cut(s)	151, 220, 286, 373, 458
BseSI	GKGCMC	1 cut(s)	587
BseX3I	CGGCCG	2 cut(s)	235, 322
BseYI	CCCAGC	2 cut(s)	40, 276
Bsh1236I	CGCG	1 cut(s)	589
Bsh1285I	CGRYCG	2 cut(s)	238, 325
BshVI	ATCGAT	1 cut(s)	562
BsiEI	CGRYCG	2 cut(s)	238, 325
BsiHKCI	CYCGRG	1 cut(s)	422
BsiSI	CCGG	7 cut(s)	204, 234, 238, 321, 482, 516, 531
BslI	CCNNNNNNNGG	6 cut(s)	22, 46, 237, 424, 425, 605
BsmAI	GTCTC	1 cut(s)	373
BsoBI	CYCGRG	1 cut(s)	422
Bsp120I	GGGCCC	1 cut(s)	583
Bsp1286I	GDGCHC	3 cut(s)	431, 587, 600
Bsp143I	GATC	5 cut(s)	57, 99, 497, 563, 569
BspACI	CCGC	9 cut(s)	165, 189, 259, 262, 325, 328, 343, 435, 587
BspCNI	CTCAG	1 cut(s)	377
BspDI	ATCGAT	1 cut(s)	562
BspFNI	CGCG	1 cut(s)	589
BspHI	TCATGA	1 cut(s)	507
BspLI	GGNNCC	4 cut(s)	85, 208, 430, 585
BspPI	GGATC	3 cut(s)	52, 492, 558
BsrI	ACTGG	1 cut(s)	525
BssECI	CCNNGG	3 cut(s)	45, 79, 423
BssMI	GATC	5 cut(s)	57, 99, 497, 563, 569
Bst2UI	CCWGG	2 cut(s)	47, 81
Bst4CI	ACNGT	1 cut(s)	184
Bst6I	CTCTTC	1 cut(s)	476
BstC8I	GCNNGC	4 cut(s)	282, 587, 625, 649
BstDEI	CTNAG	2 cut(s)	364, 652
BstENI	CCTNNNNNAGG	1 cut(s)	20
BstF5I	GGATG	2 cut(s)	120, 535
BstFNI	CGCG	1 cut(s)	589
BstKTI	GATC	5 cut(s)	60, 102, 500, 566, 572
BstMAI	GTCTC	1 cut(s)	373
BstMBI	GATC	5 cut(s)	57, 99, 497, 563, 569
BstMCI	CGRYCG	2 cut(s)	238, 325
BstMWI	GCNNNNNNNGC	6 cut(s)	114, 281, 482, 540, 595, 648
BstNI	CCWGG	2 cut(s)	47, 81
BstSCI	CCNGG	4 cut(s)	45, 79, 237, 515
BstSLI	GKGCMC	1 cut(s)	587
BstUI	CGCG	1 cut(s)	589
BstV2I	GAAGAC	1 cut(s)	12
BstZI	CGGCCG	2 cut(s)	235, 322
Bsu15I	ATCGAT	1 cut(s)	562
BsuTUI	ATCGAT	1 cut(s)	562
BtgZI	GCGATG	2 cut(s)	44, 160
BtsCI	GGATG	2 cut(s)	120, 535
Cac8I	GCNNGC	4 cut(s)	282, 587, 625, 649
CciI	TCATGA	1 cut(s)	507
Cfr13I	GGNCC	5 cut(s)	38, 283, 518, 583, 584
ClaI	ATCGAT	1 cut(s)	562
Csp6I	GTAC	1 cut(s)	513
CviAII	CATG	3 cut(s)	55, 110, 508
CviQI	GTAC	1 cut(s)	513
DdeI	CTNAG	2 cut(s)	364, 652
DpnI	GATC	5 cut(s)	59, 101, 499, 565, 571
DpnII	GATC	5 cut(s)	57, 99, 497, 563, 569
EaeI	YGGCCR	4 cut(s)	106, 235, 322, 532
EagI	CGGCCG	2 cut(s)	235, 322
Eam1104I	CTCTTC	1 cut(s)	476
EarI	CTCTTC	1 cut(s)	476
EciI	GGCGGA	3 cut(s)	154, 248, 332
EclXI	CGGCCG	2 cut(s)	235, 322
Eco24I	GRGCYC	3 cut(s)	431, 587, 600
Eco52I	CGGCCG	2 cut(s)	235, 322
Eco88I	CYCGRG	1 cut(s)	422
EcoNI	CCTNNNNNAGG	1 cut(s)	20
EcoRI	GAATTC	1 cut(s)	359
EcoRII	CCWGG	2 cut(s)	45, 79
EcoT38I	GRGCYC	3 cut(s)	431, 587, 600
FaeI	CATG	3 cut(s)	58, 113, 511
FaiI	YATR	3 cut(s)	56, 111, 509
FalI	AAGNNNNNCTT	2 cut(s)	532, 564
FatI	CATG	3 cut(s)	54, 109, 507
FauI	CCCGC	2 cut(s)	442, 594
FblI	GTMKAC	2 cut(s)	90, 243
Fnu4HI	GCNGC	3 cut(s)	262, 325, 328
FokI	GGATG	2 cut(s)	107, 522
FriOI	GRGCYC	3 cut(s)	431, 587, 600
Fsp4HI	GCNGC	3 cut(s)	262, 325, 328
FspBI	CTAG	2 cut(s)	17, 620
GluI	GCNGC	3 cut(s)	262, 325, 328
GsaI	CCCAGC	2 cut(s)	44, 280
HapII	CCGG	7 cut(s)	204, 234, 238, 321, 482, 516, 531
Hin1II	CATG	3 cut(s)	58, 113, 511
HincII	GTYRAC	3 cut(s)	91, 244, 576
HindII	GTYRAC	3 cut(s)	91, 244, 576
HinfI	GANTC	1 cut(s)	143
HpaII	CCGG	7 cut(s)	204, 234, 238, 321, 482, 516, 531
HphI	GGTGA	3 cut(s)	127, 178, 442
Hpy166II	GTNNAC	3 cut(s)	91, 244, 576
Hpy188I	TCNGA	3 cut(s)	356, 494, 595
Hpy188III	TCNNGA	3 cut(s)	422, 508, 567
Hpy8I	GTNNAC	3 cut(s)	91, 244, 576
Hpy99I	CGWCG	3 cut(s)	92, 95, 143
HpyAV	CCTTC	3 cut(s)	202, 229, 558
HpyCH4III	ACNGT	1 cut(s)	184
HpyF10VI	GCNNNNNNNGC	6 cut(s)	114, 281, 482, 540, 595, 648
HpyF3I	CTNAG	2 cut(s)	364, 652
Hsp92II	CATG	3 cut(s)	58, 113, 511
Kzo9I	GATC	5 cut(s)	57, 99, 497, 563, 569
LmnI	GCTCC	4 cut(s)	89, 206, 212, 434
MaeI	CTAG	2 cut(s)	17, 620
MaeIII	GTNAC	1 cut(s)	184
MalI	GATC	5 cut(s)	59, 101, 499, 565, 571
MboI	GATC	5 cut(s)	57, 99, 497, 563, 569
MboII	GAAGA	4 cut(s)	17, 94, 187, 463
MhlI	GDGCHC	3 cut(s)	431, 587, 600
MluCI	AATT	4 cut(s)	151, 359, 609, 635
MlyI	GAGTC	1 cut(s)	137
MmeI	TCCRAC	3 cut(s)	85, 396, 411
MslI	CAYNNNNRTG	1 cut(s)	506
MspI	CCGG	7 cut(s)	204, 234, 238, 321, 482, 516, 531
MspR9I	CCNGG	4 cut(s)	47, 81, 239, 517
MvaI	CCWGG	2 cut(s)	47, 81
MvnI	CGCG	1 cut(s)	589
MwoI	GCNNNNNNNGC	6 cut(s)	114, 281, 482, 540, 595, 648
NciI	CCSGG	2 cut(s)	239, 517
NdeII	GATC	5 cut(s)	57, 99, 497, 563, 569
NlaIII	CATG	3 cut(s)	58, 113, 511
NlaIV	GGNNCC	4 cut(s)	85, 208, 430, 585
NmeAIII	GCCGAG	1 cut(s)	288
NmuCI	GTSAC	1 cut(s)	184
PagI	TCATGA	1 cut(s)	507
PkrI	GCNGC	3 cut(s)	263, 326, 329
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
Psp6I	CCWGG	2 cut(s)	45, 79
PspFI	CCCAGC	2 cut(s)	40, 276
PspGI	CCWGG	2 cut(s)	45, 79
PspN4I	GGNNCC	4 cut(s)	85, 208, 430, 585
PspOMI	GGGCCC	1 cut(s)	583
PspPI	GGNCC	5 cut(s)	38, 283, 518, 583, 584
RsaI	GTAC	1 cut(s)	514
RsaNI	GTAC	1 cut(s)	513
RseI	CAYNNNNRTG	1 cut(s)	506
SalI	GTCGAC	2 cut(s)	89, 242
SatI	GCNGC	3 cut(s)	262, 325, 328
Sau3AI	GATC	5 cut(s)	57, 99, 497, 563, 569
Sau96I	GGNCC	5 cut(s)	38, 283, 518, 583, 584
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	4 cut(s)	47, 81, 239, 517
SduI	GDGCHC	3 cut(s)	431, 587, 600
SetI	ASST	7 cut(s)	27, 77, 161, 306, 342, 625, 653
SgrDI	CGTCGACG	1 cut(s)	89
SmiMI	CAYNNNNRTG	1 cut(s)	506
Sse9I	AATT	4 cut(s)	151, 359, 609, 635
SsiI	CCGC	9 cut(s)	165, 189, 259, 262, 325, 328, 343, 435, 587
SspMI	CTAG	2 cut(s)	17, 620
StyD4I	CCNGG	4 cut(s)	45, 79, 237, 515
TaaI	ACNGT	1 cut(s)	184
TaqI	TCGA	4 cut(s)	90, 243, 551, 562
TasI	AATT	4 cut(s)	151, 359, 609, 635
TauI	GCSGC	3 cut(s)	264, 327, 330
TseFI	GTSAC	1 cut(s)	184
Tsp45I	GTSAC	1 cut(s)	184
TspGWI	ACGGA	1 cut(s)	76
XagI	CCTNNNNNAGG	1 cut(s)	20
XapI	RAATTY	2 cut(s)	359, 609
XmiI	GTMKAC	2 cut(s)	90, 243
XspI	CTAG	2 cut(s)	17, 620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.