Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0007096

Physical Location & Seq

Genomic Coordinates Reverse (-)

4086320 .. 4087161

Gene Structure 842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0052800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGTAAACCTTCTCGCTCCCATCTTGGTATGTCCACTTGTGGTCATGGCAATCGAATGCAAAAGTATGAAATCTAAATTAGAAGAAGTGAAAAGGTTCAACGAGACTCTGGACATGTCTTTGCTGATCATGTGCAGGGAGCGTATGGAGAAGAACATGGCAGAGACGATGGAGAAGAAGATGGCAGAGATGATGGAGAAGAGGATGGCAGAGATGATGGAGAAGAAGATGACAGAGATGGTGGAGAAGTTGGCAGAGGAGAAGAGGTTGGGAGAGAAGAAGAATTTGCCAGAGATTAGGAAATTGGCAGAGGAAAGGTATAACTCCGTGCGCAGAAAATATTATGTATGGAGATTTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

120

Amino Acids

14.45

Weight (kDa)

9.13

Isoelectric Point (pI)

59.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Publication-ready

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Orthologous Genes (Group: OG0007096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08780 AT3G08780
fragaria_vesca	FvH4_6g10650 FvH4_6g10650 FvH4_6g10650 FvH4_6g10650
malus_domestica	MD04G1166100.v1.1 MD04G1166200.v1.1
prunus_persica	Prupe.6G284500_v2.0.a1
pyrus_communis	pycom04g14770
rosa_chinensis	RchiOBHm_Chr3g0461671
rosa_laevigata	RLG00000024906 RLG00000024907
rosa_multiflora	Rmu_sc0012406.1_g000006 Rmu_sc0038320.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332550 Rroxscaffold_6G00418050
rosa_rugosa	Rorug03G0052800 Rorug03G0052900 Rorug03G0053000 Rorug03G0053000
rosa_samantha	Rh3BG114100 Rh3CG116200 Rh3DG116000
rosa_wichuraiana	Rw3G009400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	332
AcsI	RAATTY	1 cut(s)	283
AflIII	ACRYGT	1 cut(s)	114
AgsI	TTSAA	1 cut(s)	100
Alw26I	GTCTC	2 cut(s)	98, 158
ApoI	RAATTY	1 cut(s)	283
Asp700I	GAANNNNTTC	1 cut(s)	95
AspLEI	GCGC	1 cut(s)	333
BccI	CCATC	7 cut(s)	29, 163, 175, 187, 199, 211, 232
BclI	TGATCA	1 cut(s)	126
BcoDI	GTCTC	2 cut(s)	98, 158
BsaXI	ACNNNNNCTCC	2 cut(s)	251, 281
BseGI	GGATG	1 cut(s)	210
BseRI	GAGGAG	1 cut(s)	272
BsgI	GTGCAG	1 cut(s)	154
BsmAI	GTCTC	2 cut(s)	98, 158
BsmBI	CGTCTC	1 cut(s)	158
BsmI	GAATGC	1 cut(s)	62
Bsp143I	GATC	1 cut(s)	126
BssMI	GATC	1 cut(s)	126
Bst6I	CTCTTC	2 cut(s)	194, 257
BstDEI	CTNAG	1 cut(s)	360
BstF5I	GGATG	1 cut(s)	210
BstHHI	GCGC	1 cut(s)	333
BstKTI	GATC	1 cut(s)	129
BstMAI	GTCTC	2 cut(s)	98, 158
BstMBI	GATC	1 cut(s)	126
BstNSI	RCATGY	1 cut(s)	118
BtsCI	GGATG	1 cut(s)	210
CfoI	GCGC	1 cut(s)	333
CviAII	CATG	4 cut(s)	46, 115, 130, 157
DdeI	CTNAG	1 cut(s)	360
DpnI	GATC	1 cut(s)	128
DpnII	GATC	1 cut(s)	126
Eam1104I	CTCTTC	2 cut(s)	194, 257
EarI	CTCTTC	2 cut(s)	194, 257
Esp3I	CGTCTC	1 cut(s)	158
FaeI	CATG	4 cut(s)	49, 118, 133, 160
FatI	CATG	4 cut(s)	45, 114, 129, 156
FbaI	TGATCA	1 cut(s)	126
FokI	GGATG	1 cut(s)	217
FspI	TGCGCA	1 cut(s)	332
GlaI	GCGC	1 cut(s)	332
HhaI	GCGC	1 cut(s)	333
Hin1II	CATG	4 cut(s)	49, 118, 133, 160
Hin6I	GCGC	1 cut(s)	331
HinP1I	GCGC	1 cut(s)	331
HinfI	GANTC	1 cut(s)	106
Hpy166II	GTNNAC	2 cut(s)	7, 35
Hpy188III	TCNNGA	1 cut(s)	110
Hpy8I	GTNNAC	2 cut(s)	7, 35
HpyAV	CCTTC	1 cut(s)	20
HpyCH4V	TGCA	2 cut(s)	60, 135
HpyF3I	CTNAG	1 cut(s)	360
Hsp92II	CATG	4 cut(s)	49, 118, 133, 160
HspAI	GCGC	1 cut(s)	331
Ksp22I	TGATCA	1 cut(s)	126
Kzo9I	GATC	1 cut(s)	126
LmnI	GCTCC	2 cut(s)	22, 139
LpnPI	CCDG	3 cut(s)	95, 121, 303
MalI	GATC	1 cut(s)	128
MboI	GATC	1 cut(s)	126
MluCI	AATT	3 cut(s)	77, 283, 302
MlyI	GAGTC	1 cut(s)	100
MnlI	CCTC	4 cut(s)	195, 250, 258, 304
MroXI	GAANNNNTTC	1 cut(s)	95
Mva1269I	GAATGC	1 cut(s)	62
NdeII	GATC	1 cut(s)	126
NlaIII	CATG	4 cut(s)	49, 118, 133, 160
NsbI	TGCGCA	1 cut(s)	332
NspI	RCATGY	1 cut(s)	118
PciI	ACATGT	1 cut(s)	114
PctI	GAATGC	1 cut(s)	62
PdmI	GAANNNNTTC	1 cut(s)	95
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
PscI	ACATGT	1 cut(s)	114
Sau3AI	GATC	1 cut(s)	126
SchI	GAGTC	1 cut(s)	100
SetI	ASST	4 cut(s)	12, 98, 269, 320
Sse9I	AATT	3 cut(s)	77, 283, 302
SspI	AATATT	1 cut(s)	341
TaqI	TCGA	1 cut(s)	54
TasI	AATT	3 cut(s)	77, 283, 302
TspDTI	ATGAA	1 cut(s)	83
TspGWI	ACGGA	1 cut(s)	316
XapI	RAATTY	1 cut(s)	283
XceI	RCATGY	1 cut(s)	118
XmnI	GAANNNNTTC	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.