Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0007096

Physical Location & Seq

Genomic Coordinates Reverse (-)

25666770 .. 25669122

Gene Structure 2353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1166100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGTGCAGTGAGGACTTGGATGTTGGAAGCCTCAGTAGGCTGATGGGTTCGGAGGCTGCGAATTACACCGCCGGCGTCGAGGACTTGTATGAGAAAATGCTTGTCAAGATTGAAACTTTGACCAGGCTCGTTGAGCAGAGCTCCGCCAAGGTTCTTGAGCAGGAAAATCACAATAGGAAGCTAAGGTACAAAGCTGCTAGGTCTGCTGGGTTGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

73

Amino Acids

8.05

Weight (kDa)

5.4

Isoelectric Point (pI)

54.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08780 AT3G08780
fragaria_vesca	FvH4_6g10650 FvH4_6g10650 FvH4_6g10650 FvH4_6g10650
malus_domestica	MD04G1166100.v1.1 MD04G1166200.v1.1
prunus_persica	Prupe.6G284500_v2.0.a1
pyrus_communis	pycom04g14770
rosa_chinensis	RchiOBHm_Chr3g0461671
rosa_laevigata	RLG00000024906 RLG00000024907
rosa_multiflora	Rmu_sc0012406.1_g000006 Rmu_sc0038320.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332550 Rroxscaffold_6G00418050
rosa_rugosa	Rorug03G0052800 Rorug03G0052900 Rorug03G0053000 Rorug03G0053000
rosa_samantha	Rh3BG114100 Rh3CG116200 Rh3DG116000
rosa_wichuraiana	Rw3G009400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	69, 144
AcyI	GRCGYC	1 cut(s)	75
AfaI	GTAC	1 cut(s)	188
AgsI	TTSAA	1 cut(s)	113
AjnI	CCWGG	1 cut(s)	122
AluBI	AGCT	3 cut(s)	141, 181, 194
AluI	AGCT	3 cut(s)	141, 181, 194
Alw21I	GWGCWC	1 cut(s)	143
ApeKI	GCWGC	2 cut(s)	56, 194
BanII	GRGCYC	1 cut(s)	143
BarI	GAAGNNNNNNTAC	2 cut(s)	170, 202
Bbv12I	GWGCWC	1 cut(s)	143
BbvI	GCAGC	2 cut(s)	43, 181
BccI	CCATC	1 cut(s)	37
BciT130I	CCWGG	1 cut(s)	124
BfaI	CTAG	1 cut(s)	198
BisI	GCNGC	2 cut(s)	57, 195
BlsI	GCNGC	2 cut(s)	58, 196
Bme1390I	CCNGG	1 cut(s)	124
BmrFI	CCNGG	1 cut(s)	124
BplI	GAGNNNNNCTC	2 cut(s)	125, 157
Bpu10I	CCTNAGC	1 cut(s)	182
BpuEI	CTTGAG	1 cut(s)	176
BsaHI	GRCGYC	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	147
Bse118I	RCCGGY	1 cut(s)	71
BseBI	CCWGG	1 cut(s)	124
BseDI	CCNNGG	1 cut(s)	147
BseGI	GGATG	1 cut(s)	25
BseMII	CTCAG	1 cut(s)	46
BseXI	GCAGC	2 cut(s)	43, 181
BseYI	CCCAGC	1 cut(s)	206
BsgI	GTGCAG	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	143
BsiSI	CCGG	1 cut(s)	72
Bsp1286I	GDGCHC	1 cut(s)	143
BspACI	CCGC	2 cut(s)	69, 144
BspCNI	CTCAG	1 cut(s)	45
BsrFI	RCCGGY	1 cut(s)	71
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	1 cut(s)	147
BssNI	GRCGYC	1 cut(s)	75
BssT1I	CCWWGG	1 cut(s)	147
Bst2UI	CCWGG	1 cut(s)	124
BstACI	GRCGYC	1 cut(s)	75
BstC8I	GCNNGC	1 cut(s)	73
BstDEI	CTNAG	2 cut(s)	32, 182
BstF5I	GGATG	1 cut(s)	25
BstMWI	GCNNNNNNNGC	2 cut(s)	133, 203
BstNI	CCWGG	1 cut(s)	124
BstSCI	CCNGG	1 cut(s)	122
BstV1I	GCAGC	2 cut(s)	43, 181
BtsCI	GGATG	1 cut(s)	25
BtsI	GCAGTG	1 cut(s)	13
BtsIMutI	CAGTG	1 cut(s)	13
Cac8I	GCNNGC	1 cut(s)	73
Cfr10I	RCCGGY	1 cut(s)	71
CseI	GACGC	1 cut(s)	64
Csp6I	GTAC	1 cut(s)	187
CviJI	RGCY	7 cut(s)	30, 40, 56, 127, 141, 181, 194
CviKI_1	RGCY	7 cut(s)	30, 40, 56, 127, 141, 181, 194
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	2 cut(s)	32, 182
EciI	GGCGGA	1 cut(s)	133
Ecl136II	GAGCTC	1 cut(s)	141
Eco130I	CCWWGG	1 cut(s)	147
Eco24I	GRGCYC	1 cut(s)	143
Eco53kI	GAGCTC	1 cut(s)	141
EcoICRI	GAGCTC	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	122
EcoT14I	CCWWGG	1 cut(s)	147
EcoT38I	GRGCYC	1 cut(s)	143
ErhI	CCWWGG	1 cut(s)	147
FaiI	YATR	1 cut(s)	90
Fnu4HI	GCNGC	2 cut(s)	57, 195
FokI	GGATG	1 cut(s)	32
FriOI	GRGCYC	1 cut(s)	143
Fsp4HI	GCNGC	2 cut(s)	57, 195
FspBI	CTAG	1 cut(s)	198
GluI	GCNGC	2 cut(s)	57, 195
GsaI	CCCAGC	1 cut(s)	210
HapII	CCGG	1 cut(s)	72
HgaI	GACGC	1 cut(s)	64
Hin1I	GRCGYC	1 cut(s)	75
HpaII	CCGG	1 cut(s)	72
Hpy188I	TCNGA	1 cut(s)	52
Hpy188III	TCNNGA	2 cut(s)	106, 155
Hpy99I	CGWCG	1 cut(s)	80
HpyCH4V	TGCA	1 cut(s)	6
HpyF10VI	GCNNNNNNNGC	2 cut(s)	133, 203
HpyF3I	CTNAG	2 cut(s)	32, 182
Hsp92I	GRCGYC	1 cut(s)	75
KroI	GCCGGC	1 cut(s)	71
KroNI	GCCGGC	1 cut(s)	73
LmnI	GCTCC	1 cut(s)	146
LpnPI	CCDG	5 cut(s)	85, 109, 136, 146, 192
Lsp1109I	GCAGC	2 cut(s)	43, 181
MaeI	CTAG	1 cut(s)	198
MhlI	GDGCHC	1 cut(s)	143
MluCI	AATT	1 cut(s)	61
MmeI	TCCRAC	2 cut(s)	4, 192
MnlI	CCTC	4 cut(s)	4, 41, 46, 73
MreI	CGCCGGCG	1 cut(s)	71
MroNI	GCCGGC	1 cut(s)	71
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	1 cut(s)	124
MvaI	CCWGG	1 cut(s)	124
MwoI	GCNNNNNNNGC	2 cut(s)	133, 203
NaeI	GCCGGC	1 cut(s)	73
NgoMIV	GCCGGC	1 cut(s)	71
PcsI	WCGNNNNNNNCGW	1 cut(s)	56
PdiI	GCCGGC	1 cut(s)	73
PkrI	GCNGC	2 cut(s)	58, 196
Psp124BI	GAGCTC	1 cut(s)	143
Psp6I	CCWGG	1 cut(s)	122
PspFI	CCCAGC	1 cut(s)	206
PspGI	CCWGG	1 cut(s)	122
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SacI	GAGCTC	1 cut(s)	143
SatI	GCNGC	2 cut(s)	57, 195
ScrFI	CCNGG	1 cut(s)	124
SduI	GDGCHC	1 cut(s)	143
SetI	ASST	6 cut(s)	143, 153, 183, 188, 196, 203
SgrAI	CRCCGGYG	1 cut(s)	71
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	1 cut(s)	61
SsiI	CCGC	2 cut(s)	69, 144
SspMI	CTAG	1 cut(s)	198
SstI	GAGCTC	1 cut(s)	143
StyD4I	CCNGG	1 cut(s)	122
StyI	CCWWGG	1 cut(s)	147
TaqI	TCGA	1 cut(s)	78
TasI	AATT	1 cut(s)	61
TscAI	CASTG	1 cut(s)	13
TseI	GCWGC	2 cut(s)	56, 194
TspRI	CASTG	1 cut(s)	13
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.