Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0007096

Physical Location & Seq

Genomic Coordinates Reverse (-)

39600044 .. 39602477

Gene Structure 2434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00418050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGAAGATCCTTCCGTAGAGAAAATCGCTATCTCCGGCCCGGCCTTGGCCTCCCTGATCCAACGCTTCTCCACCTCCCGCGGCGCCGTCGACGGCTTAATCTTCGGCCACGTCAGCCTCATCGCCCCCACTCTCTCCGACGACGATTCCTCCTCCTCCTCCTCCACCCTCATCGCCACCGTCACCTCCTTCTTCTGCTTCTCCTCCTCCCTCTCCTTCTACACCCCCTCGGGCCGGGTCGACCCGCTCCTCCTCCGCCGCCTCGCCCAGCCGCAACCCCCCTCCTCCCACCTCCTCGGCTGGTTCTCCGGCCGCCGCAGAACCCACCTCCGACCCTCCTTACGCGAATTTGCCGTCTCCAACTCTCTAATCTCCAACCCTAACCTCACCTTGCCAATCCAAAACTCTCCGGCGCCGATCGCCGTCGATCTCAAACCCTGCCTCTTCTTCCTCTTCGCTTCCCCGATCTCCGATCAGACAATCCACACCCACGAGTACCGCGCGTACCAGTTCCGCAGCTCCACCCACTGCTTCGACCCCAAATCGATCGACATTGTCAACATCGGCCCGGCGTTTCGCGGCCACTACGGCGCCTTCAGCCCCAACTCGCAGCTTCCGGCGCTGCCCTGCGAATTGAGGGTTTCGCCGATGAATGTGGACAAGGGAGAAGAGAGTTTAGGGCAGTTGAAGAAGGGCTTGAAGGCCCAGAGTGAGCTGGACATGTGCGCCGAGGGGTTAGAGGTGAATAGCCTGAGTAGGCTGATGGGTTCAGAGGCTGTGAATTACACTTCTGGAGTGGAGGAGTTGTATGAGAAGATGCTTGTGAAGATTGAGAGCTTGGCCAGGCAAGTTGAGAACAGCTCTGCCAAGATTCGAGAGCAGGAAGATCACAATAGGAAGTTGCGACACAAAGCTGCTAGGACTGCTGGATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

311

Amino Acids

34.1

Weight (kDa)

7.71

Isoelectric Point (pI)

54.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MPN_2A_DUB_like	PF21125	11 - 189	5.7e-09	BRCA1-A complex subunit Abraxas 1 MPN domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08780 AT3G08780
fragaria_vesca	FvH4_6g10650 FvH4_6g10650 FvH4_6g10650 FvH4_6g10650
malus_domestica	MD04G1166100.v1.1 MD04G1166200.v1.1
prunus_persica	Prupe.6G284500_v2.0.a1
pyrus_communis	pycom04g14770
rosa_chinensis	RchiOBHm_Chr3g0461671
rosa_laevigata	RLG00000024906 RLG00000024907
rosa_multiflora	Rmu_sc0012406.1_g000006 Rmu_sc0038320.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332550 Rroxscaffold_6G00418050
rosa_rugosa	Rorug03G0052800 Rorug03G0052900 Rorug03G0053000 Rorug03G0053000
rosa_samantha	Rh3BG114100 Rh3CG116200 Rh3DG116000
rosa_wichuraiana	Rw3G009400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	83, 412, 590
AccBSI	CCGCTC	1 cut(s)	247
AccI	GTMKAC	2 cut(s)	90, 240
AccII	CGCG	5 cut(s)	81, 345, 501, 503, 579
AclWI	GGATC	2 cut(s)	2, 52
AcoI	YGGCCR	4 cut(s)	106, 310, 580, 840
AcsI	RAATTY	1 cut(s)	347
AcuI	CTGAAG	1 cut(s)	580
AcyI	GRCGYC	3 cut(s)	84, 413, 591
AfaI	GTAC	2 cut(s)	497, 506
AfiI	CCNNNNNNNGG	2 cut(s)	46, 234
AflIII	ACRYGT	1 cut(s)	720
AgsI	TTSAA	2 cut(s)	688, 700
AjiI	CACGTC	1 cut(s)	112
AjnI	CCWGG	1 cut(s)	842
AluBI	AGCT	6 cut(s)	519, 613, 715, 837, 861, 914
AluI	AGCT	6 cut(s)	519, 613, 715, 837, 861, 914
Alw26I	GTCTC	1 cut(s)	361
AlwI	GGATC	2 cut(s)	2, 52
AlwNI	CAGNNNCTG	1 cut(s)	776
Ama87I	CYCGRG	1 cut(s)	229
ApeKI	GCWGC	4 cut(s)	516, 610, 622, 914
ApoI	RAATTY	1 cut(s)	347
ArsI	GACNNNNNNTTYG	2 cut(s)	339, 371
AspLEI	GCGC	6 cut(s)	86, 415, 503, 593, 622, 728
AspS9I	GGNCC	4 cut(s)	38, 232, 566, 703
AsuC2I	CCSGG	3 cut(s)	41, 236, 569
AsuHPI	GGTGA	3 cut(s)	175, 379, 754
AvaI	CYCGRG	1 cut(s)	229
BalI	TGGCCA	1 cut(s)	842
BanI	GGYRCC	3 cut(s)	83, 412, 590
BauI	CACGAG	1 cut(s)	491
BbvI	GCAGC	4 cut(s)	528, 609, 622, 901
BccI	CCATC	1 cut(s)	757
BceAI	ACGGC	5 cut(s)	71, 109, 338, 407, 604
BciT130I	CCWGG	1 cut(s)	844
BcnI	CCSGG	3 cut(s)	41, 236, 569
BcoDI	GTCTC	1 cut(s)	361
BfaI	CTAG	1 cut(s)	918
BfoI	RGCGCY	4 cut(s)	87, 416, 594, 623
BglI	GCCNNNNNGGC	1 cut(s)	588
Bme1390I	CCNGG	4 cut(s)	41, 236, 569, 844
BmeT110I	CYCGRG	1 cut(s)	229
BmgBI	CACGTC	1 cut(s)	112
BmgT120I	GGNCC	4 cut(s)	38, 232, 566, 703
BmiI	GGNNCC	3 cut(s)	85, 414, 592
BmrFI	CCNGG	4 cut(s)	41, 236, 569, 844
BmsI	GCATC	1 cut(s)	807
BplI	GAGNNNNNCTC	2 cut(s)	845, 877
BpmI	CTGGAG	1 cut(s)	813
BpuMI	CCSGG	3 cut(s)	41, 236, 569
Bsa29I	ATCGAT	1 cut(s)	545
BsaHI	GRCGYC	3 cut(s)	84, 413, 591
BsaJI	CCNNGG	5 cut(s)	45, 79, 228, 295, 729
BsaXI	ACNNNNNCTCC	4 cut(s)	134, 164, 791, 821
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 234
Bse1I	ACTGG	1 cut(s)	508
BseBI	CCWGG	1 cut(s)	844
BseCI	ATCGAT	1 cut(s)	545
BseDI	CCNNGG	5 cut(s)	45, 79, 228, 295, 729
BseLI	CCNNNNNNNGG	2 cut(s)	46, 234
BseMII	CTCAG	1 cut(s)	743
BseNI	ACTGG	1 cut(s)	508
BseX3I	CGGCCG	1 cut(s)	310
BseXI	GCAGC	4 cut(s)	528, 609, 622, 901
BseYI	CCCAGC	1 cut(s)	267
Bsh1236I	CGCG	5 cut(s)	81, 345, 501, 503, 579
Bsh1285I	CGRYCG	3 cut(s)	313, 420, 549
BshNI	GGYRCC	3 cut(s)	83, 412, 590
BshVI	ATCGAT	1 cut(s)	545
BsiEI	CGRYCG	3 cut(s)	313, 420, 549
BsiHKCI	CYCGRG	1 cut(s)	229
BsiSI	CCGG	7 cut(s)	36, 41, 235, 309, 410, 569, 617
BslI	CCNNNNNNNGG	2 cut(s)	46, 234
BsmAI	GTCTC	1 cut(s)	361
BsmBI	CGTCTC	1 cut(s)	361
BsoBI	CYCGRG	1 cut(s)	229
Bsp143I	GATC	8 cut(s)	7, 57, 417, 427, 465, 472, 546, 886
BspCNI	CTCAG	1 cut(s)	744
BspDI	ATCGAT	1 cut(s)	545
BspFNI	CGCG	5 cut(s)	81, 345, 501, 503, 579
BspLI	GGNNCC	3 cut(s)	85, 414, 592
BspPI	GGATC	2 cut(s)	2, 52
BspT107I	GGYRCC	3 cut(s)	83, 412, 590
BsrBI	CCGCTC	1 cut(s)	247
BsrI	ACTGG	1 cut(s)	508
BssECI	CCNNGG	5 cut(s)	45, 79, 228, 295, 729
BssMI	GATC	8 cut(s)	7, 57, 417, 427, 465, 472, 546, 886
BssNI	GRCGYC	3 cut(s)	84, 413, 591
BssSI	CACGAG	1 cut(s)	491
BssT1I	CCWWGG	1 cut(s)	45
Bst2BI	CACGAG	1 cut(s)	491
Bst2UI	CCWGG	1 cut(s)	844
Bst4CI	ACNGT	1 cut(s)	181
Bst6I	CTCTTC	3 cut(s)	449, 458, 663
BstACI	GRCGYC	3 cut(s)	84, 413, 591
BstDEI	CTNAG	1 cut(s)	752
BstDSI	CCRYGG	1 cut(s)	79
BstFNI	CGCG	5 cut(s)	81, 345, 501, 503, 579
BstH2I	RGCGCY	4 cut(s)	87, 416, 594, 623
BstHHI	GCGC	6 cut(s)	86, 415, 503, 593, 622, 728
BstKTI	GATC	8 cut(s)	10, 60, 420, 430, 468, 475, 549, 889
BstMAI	GTCTC	1 cut(s)	361
BstMBI	GATC	8 cut(s)	7, 57, 417, 427, 465, 472, 546, 886
BstMCI	CGRYCG	3 cut(s)	313, 420, 549
BstMWI	GCNNNNNNNGC	6 cut(s)	114, 419, 588, 597, 619, 923
BstNI	CCWGG	1 cut(s)	844
BstNSI	RCATGY	1 cut(s)	724
BstSCI	CCNGG	4 cut(s)	39, 234, 567, 842
BstUI	CGCG	5 cut(s)	81, 345, 501, 503, 579
BstV1I	GCAGC	4 cut(s)	528, 609, 622, 901
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BstZI	CGGCCG	1 cut(s)	310
Bsu15I	ATCGAT	1 cut(s)	545
BsuTUI	ATCGAT	1 cut(s)	545
BtgI	CCRYGG	1 cut(s)	79
BtgZI	GCGATG	2 cut(s)	106, 157
BtrI	CACGTC	1 cut(s)	112
BtsI	GCAGTG	1 cut(s)	526
BtsIMutI	CAGTG	1 cut(s)	526
CaiI	CAGNNNCTG	1 cut(s)	776
CfoI	GCGC	6 cut(s)	86, 415, 503, 593, 622, 728
Cfr13I	GGNCC	4 cut(s)	38, 232, 566, 703
Cfr42I	CCGCGG	1 cut(s)	82
ClaI	ATCGAT	1 cut(s)	545
Csp6I	GTAC	2 cut(s)	496, 505
CviAII	CATG	1 cut(s)	721
CviQI	GTAC	2 cut(s)	496, 505
DdeI	CTNAG	1 cut(s)	752
DinI	GGCGCC	3 cut(s)	85, 414, 592
DpnI	GATC	8 cut(s)	9, 59, 419, 429, 467, 474, 548, 888
DpnII	GATC	8 cut(s)	7, 57, 417, 427, 465, 472, 546, 886
EaeI	YGGCCR	4 cut(s)	106, 310, 580, 840
EagI	CGGCCG	1 cut(s)	310
Eam1104I	CTCTTC	3 cut(s)	449, 458, 663
EarI	CTCTTC	3 cut(s)	449, 458, 663
EciI	GGCGGA	1 cut(s)	245
EclXI	CGGCCG	1 cut(s)	310
Eco130I	CCWWGG	1 cut(s)	45
Eco52I	CGGCCG	1 cut(s)	310
Eco57I	CTGAAG	1 cut(s)	580
Eco88I	CYCGRG	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	842
EcoT14I	CCWWGG	1 cut(s)	45
EgeI	GGCGCC	3 cut(s)	85, 414, 592
EheI	GGCGCC	3 cut(s)	85, 414, 592
ErhI	CCWWGG	1 cut(s)	45
Esp3I	CGTCTC	1 cut(s)	361
FaeI	CATG	1 cut(s)	724
FaiI	YATR	2 cut(s)	722, 810
FalI	AAGNNNNNCTT	2 cut(s)	680, 712
FatI	CATG	1 cut(s)	720
FauI	CCCGC	2 cut(s)	86, 252
FblI	GTMKAC	2 cut(s)	90, 240
FspBI	CTAG	1 cut(s)	918
GlaI	GCGC	6 cut(s)	85, 414, 502, 592, 621, 727
GsaI	CCCAGC	1 cut(s)	271
GsuI	CTGGAG	1 cut(s)	813
HaeII	RGCGCY	4 cut(s)	87, 416, 594, 623
HapII	CCGG	7 cut(s)	36, 41, 235, 309, 410, 569, 617
HhaI	GCGC	6 cut(s)	86, 415, 503, 593, 622, 728
Hin1I	GRCGYC	3 cut(s)	84, 413, 591
Hin1II	CATG	1 cut(s)	724
Hin6I	GCGC	6 cut(s)	84, 413, 501, 591, 620, 726
HinP1I	GCGC	6 cut(s)	84, 413, 501, 591, 620, 726
HincII	GTYRAC	3 cut(s)	91, 241, 559
HindII	GTYRAC	3 cut(s)	91, 241, 559
HinfI	GANTC	2 cut(s)	146, 871
HpaII	CCGG	7 cut(s)	36, 41, 235, 309, 410, 569, 617
HphI	GGTGA	3 cut(s)	175, 379, 754
Hpy166II	GTNNAC	4 cut(s)	91, 241, 559, 658
Hpy188I	TCNGA	5 cut(s)	139, 332, 472, 477, 772
Hpy188III	TCNNGA	2 cut(s)	792, 875
Hpy8I	GTNNAC	4 cut(s)	91, 241, 559, 658
Hpy99I	CGWCG	5 cut(s)	92, 95, 143, 146, 428
HpyAV	CCTTC	6 cut(s)	21, 199, 226, 604, 685, 694
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4IV	ACGT	1 cut(s)	111
HpyF10VI	GCNNNNNNNGC	6 cut(s)	114, 419, 588, 597, 619, 923
HpyF3I	CTNAG	1 cut(s)	752
HpySE526I	ACGT	1 cut(s)	111
Hsp92I	GRCGYC	3 cut(s)	84, 413, 591
Hsp92II	CATG	1 cut(s)	724
HspAI	GCGC	6 cut(s)	84, 413, 501, 591, 620, 726
KasI	GGCGCC	3 cut(s)	83, 412, 590
KspI	CCGCGG	1 cut(s)	82
Kzo9I	GATC	8 cut(s)	7, 57, 417, 427, 465, 472, 546, 886
LmnI	GCTCC	2 cut(s)	252, 524
Lsp1109I	GCAGC	4 cut(s)	528, 609, 622, 901
LweI	GCATC	1 cut(s)	807
MaeI	CTAG	1 cut(s)	918
MaeII	ACGT	1 cut(s)	111
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	8 cut(s)	9, 59, 419, 429, 467, 474, 548, 888
MbiI	CCGCTC	1 cut(s)	247
MboI	GATC	8 cut(s)	7, 57, 417, 427, 465, 472, 546, 886
MflI	RGATCY	1 cut(s)	7
MlsI	TGGCCA	1 cut(s)	842
MluCI	AATT	3 cut(s)	347, 632, 781
MluNI	TGGCCA	1 cut(s)	842
Mly113I	GGCGCC	3 cut(s)	84, 413, 591
MmeI	TCCRAC	5 cut(s)	85, 162, 355, 384, 399
Mox20I	TGGCCA	1 cut(s)	842
MscI	TGGCCA	1 cut(s)	842
MseI	TTAA	1 cut(s)	98
Msp20I	TGGCCA	1 cut(s)	842
MspA1I	CMGCKG	1 cut(s)	81
MspI	CCGG	7 cut(s)	36, 41, 235, 309, 410, 569, 617
MspR9I	CCNGG	4 cut(s)	41, 236, 569, 844
MvaI	CCWGG	1 cut(s)	844
MvnI	CGCG	5 cut(s)	81, 345, 501, 503, 579
MwoI	GCNNNNNNNGC	6 cut(s)	114, 419, 588, 597, 619, 923
NarI	GGCGCC	3 cut(s)	84, 413, 591
NciI	CCSGG	3 cut(s)	41, 236, 569
NdeII	GATC	8 cut(s)	7, 57, 417, 427, 465, 472, 546, 886
NlaIII	CATG	1 cut(s)	724
NlaIV	GGNNCC	3 cut(s)	85, 414, 592
NmeAIII	GCCGAG	2 cut(s)	276, 754
NmuCI	GTSAC	1 cut(s)	181
NspI	RCATGY	1 cut(s)	724
PciI	ACATGT	1 cut(s)	720
PfeI	GAWTC	2 cut(s)	146, 871
PflFI	GACNNNGTC	1 cut(s)	554
Ple19I	CGATCG	2 cut(s)	420, 549
PluTI	GGCGCC	3 cut(s)	87, 416, 594
PscI	ACATGT	1 cut(s)	720
Psp6I	CCWGG	1 cut(s)	842
PspFI	CCCAGC	1 cut(s)	267
PspGI	CCWGG	1 cut(s)	842
PspN4I	GGNNCC	3 cut(s)	85, 414, 592
PspPI	GGNCC	4 cut(s)	38, 232, 566, 703
PstNI	CAGNNNCTG	1 cut(s)	776
PsuI	RGATCY	1 cut(s)	7
PsyI	GACNNNGTC	1 cut(s)	554
PvuI	CGATCG	2 cut(s)	420, 549
RsaI	GTAC	2 cut(s)	497, 506
RsaNI	GTAC	2 cut(s)	496, 505
SacII	CCGCGG	1 cut(s)	82
SalI	GTCGAC	2 cut(s)	89, 239
SaqAI	TTAA	1 cut(s)	98
Sau3AI	GATC	8 cut(s)	7, 57, 417, 427, 465, 472, 546, 886
Sau96I	GGNCC	4 cut(s)	38, 232, 566, 703
ScrFI	CCNGG	4 cut(s)	41, 236, 569, 844
SfaNI	GCATC	1 cut(s)	807
SfoI	GGCGCC	3 cut(s)	85, 414, 592
Sfr303I	CCGCGG	1 cut(s)	82
SgrBI	CCGCGG	1 cut(s)	82
SgrDI	CGTCGACG	1 cut(s)	89
Sse9I	AATT	3 cut(s)	347, 632, 781
SspDI	GGCGCC	3 cut(s)	83, 412, 590
SspMI	CTAG	1 cut(s)	918
StyD4I	CCNGG	4 cut(s)	39, 234, 567, 842
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	181
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	7 cut(s)	90, 240, 426, 534, 545, 549, 874
TasI	AATT	3 cut(s)	347, 632, 781
TauI	GCSGC	6 cut(s)	84, 261, 274, 315, 318, 582
TfiI	GAWTC	2 cut(s)	146, 871
Tru1I	TTAA	1 cut(s)	98
Tru9I	TTAA	1 cut(s)	98
TscAI	CASTG	1 cut(s)	533
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	4 cut(s)	516, 610, 622, 914
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	1 cut(s)	665
TspGWI	ACGGA	1 cut(s)	4
TspRI	CASTG	1 cut(s)	533
Tth111I	GACNNNGTC	1 cut(s)	554
XapI	RAATTY	1 cut(s)	347
XceI	RCATGY	1 cut(s)	724
XmiI	GTMKAC	2 cut(s)	90, 240
XspI	CTAG	1 cut(s)	918

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.