Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007096

Physical Location & Seq

Genomic Coordinates Forward (+)

6401988 .. 6404673

Gene Structure 2686 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g10650.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGCAAATGGAAGACCCCGCCGTCGAGAAAATCGCAATCTCTGGCCCCGCCCTGGCCTCCATGATCCAACGCTTCTCCACCTCCCGCTCCTCCGTCGACGGCTTAATCTTTGGCCACGTCAGCCTCCTCGCCCCTACTCTCTCCGACGACGATTCCTCCTCCTCCTCCACCCTCATCGCCACCGTCACCTCCTTCTTCTGCTCCTCCTCCTCCCTCTCCTTCTACTCCCCCTCGGGTCAAGTCGACCAGATCCTCCTCCGCCGCCTCGCCCAATCCCAATCCCCCTCCTCCCACCTCCTCGGCTGGTTCTCCGGCCGCCGCAGATCCCACCTCCGTCCCTCCCTCCGCGAATTCGCCGTCTCCAACTCCCTAACCTCCAACCCTAGCCTCTCTTTCCCGATCCAAACCTCTCCGCCGCCGATCGCCGGCGACCTCAAACCCTGCCTGTTCCTCCTCTTCGCTTCTCCGATCACCGATCAGACAATCCACACTCACGAGTACCGCGCCTACCAGTTCCGGACCGCCACGCGCTCGTTCGAGCCGAAATCGATCGACATTGTCAACATCGGTCCGGCGTTTCGAGGCCACTACGGCGCGTTCAGCCCCAGCTCGCAGTTTCCGGCTCTGCCGTGTGAGCTGAGGGCTGAGCCGATGAATGTGGATAGGGGAGAAGAGAGTTTGGGGCAGTTGAAGACTCAGAGTGAGCTGGATATGTGGGCCGAGGGGTTAGAGGTGAGTAGCTTGAGTAGGCTGATGGGTTTGGAGGCGGCGAGTTACACTTCTGGTGTGGAGGAATTGTATGGAAAGATGCTTGTGAAGATTGAGAGCTTGGCTAGGGAAGTTGAGGACAGCTCTGCGAAGATTCGAGAGCAGGAAGATCATAATAGGAAGTTGCGGTACAAAGCTGCTAGGACTGCTGGATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

309

Amino Acids

33.8

Weight (kDa)

6.19

Isoelectric Point (pI)

63.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MPN_2A_DUB_like	PF21125	13 - 190	3.9e-09	BRCA1-A complex subunit Abraxas 1 MPN domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08780 AT3G08780
fragaria_vesca	FvH4_6g10650 FvH4_6g10650 FvH4_6g10650 FvH4_6g10650
malus_domestica	MD04G1166100.v1.1 MD04G1166200.v1.1
prunus_persica	Prupe.6G284500_v2.0.a1
pyrus_communis	pycom04g14770
rosa_chinensis	RchiOBHm_Chr3g0461671
rosa_laevigata	RLG00000024906 RLG00000024907
rosa_multiflora	Rmu_sc0012406.1_g000006 Rmu_sc0038320.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332550 Rroxscaffold_6G00418050
rosa_rugosa	Rorug03G0052800 Rorug03G0052900 Rorug03G0053000 Rorug03G0053000
rosa_samantha	Rh3BG114100 Rh3CG116200 Rh3DG116000
rosa_wichuraiana	Rw3G009400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	20
AccBSI	CCGCTC	1 cut(s)	87
AccI	GTMKAC	2 cut(s)	96, 243
AccII	CGCG	4 cut(s)	348, 504, 529, 596
AccIII	TCCGGA	1 cut(s)	516
AclWI	GGATC	4 cut(s)	58, 244, 318, 394
AcoI	YGGCCR	2 cut(s)	112, 313
AcsI	RAATTY	1 cut(s)	350
AfaI	GTAC	2 cut(s)	500, 899
AfiI	CCNNNNNNNGG	2 cut(s)	52, 425
AgsI	TTSAA	1 cut(s)	691
AjiI	CACGTC	1 cut(s)	118
AjnI	CCWGG	1 cut(s)	51
AluBI	AGCT	7 cut(s)	609, 637, 706, 741, 828, 852, 905
AluI	AGCT	7 cut(s)	609, 637, 706, 741, 828, 852, 905
Alw26I	GTCTC	1 cut(s)	364
AlwI	GGATC	4 cut(s)	58, 244, 318, 394
Ama87I	CYCGRG	1 cut(s)	232
Aor13HI	TCCGGA	1 cut(s)	516
AoxI	GGCC	6 cut(s)	43, 54, 112, 313, 583, 717
ApeKI	GCWGC	1 cut(s)	905
ApoI	RAATTY	1 cut(s)	350
ArsI	GACNNNNNNTTYG	2 cut(s)	342, 374
AspLEI	GCGC	3 cut(s)	506, 531, 596
AspS9I	GGNCC	4 cut(s)	44, 519, 569, 717
AsuHPI	GGTGA	3 cut(s)	178, 463, 745
AvaI	CYCGRG	1 cut(s)	232
AvaII	GGWCC	2 cut(s)	519, 569
BalI	TGGCCA	1 cut(s)	114
BarI	GAAGNNNNNNTAC	2 cut(s)	881, 913
BauI	CACGAG	1 cut(s)	494
BbsI	GAAGAC	2 cut(s)	18, 698
BbvCI	CCTCAGC	1 cut(s)	638
BbvI	GCAGC	1 cut(s)	892
BccI	CCATC	1 cut(s)	748
BceAI	ACGGC	5 cut(s)	5, 115, 341, 607, 613
BciT130I	CCWGG	1 cut(s)	53
BcoDI	GTCTC	1 cut(s)	364
BfaI	CTAG	3 cut(s)	384, 834, 909
BglI	GCCNNNNNGGC	1 cut(s)	591
BisI	GCNGC	6 cut(s)	262, 316, 319, 416, 768, 906
BlpI	GCTNAGC	1 cut(s)	645
BlsI	GCNGC	6 cut(s)	263, 317, 320, 417, 769, 907
Bme1390I	CCNGG	1 cut(s)	53
Bme18I	GGWCC	2 cut(s)	519, 569
BmeT110I	CYCGRG	1 cut(s)	232
BmgBI	CACGTC	1 cut(s)	118
BmgT120I	GGNCC	4 cut(s)	44, 519, 569, 717
BmiI	GGNNCC	1 cut(s)	46
BmrFI	CCNGG	1 cut(s)	53
BmsI	GCATC	1 cut(s)	798
BpiI	GAAGAC	2 cut(s)	18, 698
BplI	GAGNNNNNCTC	2 cut(s)	836, 868
Bpu10I	CCTNAGC	1 cut(s)	638
Bpu1102I	GCTNAGC	1 cut(s)	645
BpuEI	CTTGAG	1 cut(s)	763
Bsa29I	ATCGAT	1 cut(s)	548
BsaJI	CCNNGG	4 cut(s)	51, 231, 298, 720
BsaWI	WCCGGW	1 cut(s)	516
BsaXI	ACNNNNNCTCC	4 cut(s)	140, 170, 782, 812
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 425
Bse118I	RCCGGY	1 cut(s)	425
Bse1I	ACTGG	1 cut(s)	511
BseAI	TCCGGA	1 cut(s)	516
BseBI	CCWGG	1 cut(s)	53
BseCI	ATCGAT	1 cut(s)	548
BseDI	CCNNGG	4 cut(s)	51, 231, 298, 720
BseLI	CCNNNNNNNGG	2 cut(s)	52, 425
BseMII	CTCAG	3 cut(s)	629, 636, 710
BseNI	ACTGG	1 cut(s)	511
BseX3I	CGGCCG	1 cut(s)	313
BseXI	GCAGC	1 cut(s)	892
BseYI	CCCAGC	1 cut(s)	605
Bsh1236I	CGCG	4 cut(s)	348, 504, 529, 596
Bsh1285I	CGRYCG	3 cut(s)	316, 423, 552
BshFI	GGCC	6 cut(s)	45, 56, 114, 315, 585, 719
BshVI	ATCGAT	1 cut(s)	548
BsiEI	CGRYCG	3 cut(s)	316, 423, 552
BsiHKCI	CYCGRG	1 cut(s)	232
BsiSI	CCGG	5 cut(s)	312, 426, 517, 572, 620
BslFI	GGGAC	1 cut(s)	321
BslI	CCNNNNNNNGG	2 cut(s)	52, 425
BsmAI	GTCTC	1 cut(s)	364
BsmBI	CGTCTC	1 cut(s)	364
BsmFI	GGGAC	1 cut(s)	321
BsnI	GGCC	6 cut(s)	45, 56, 114, 315, 585, 719
BsoBI	CYCGRG	1 cut(s)	232
Bsp13I	TCCGGA	1 cut(s)	516
Bsp143I	GATC	9 cut(s)	63, 249, 323, 399, 420, 468, 475, 549, 877
Bsp1720I	GCTNAGC	1 cut(s)	645
BspANI	GGCC	6 cut(s)	45, 56, 114, 315, 585, 719
BspCNI	CTCAG	3 cut(s)	630, 637, 709
BspDI	ATCGAT	1 cut(s)	548
BspEI	TCCGGA	1 cut(s)	516
BspFNI	CGCG	4 cut(s)	348, 504, 529, 596
BspLI	GGNNCC	1 cut(s)	46
BspPI	GGATC	4 cut(s)	58, 244, 318, 394
BsrBI	CCGCTC	1 cut(s)	87
BsrFI	RCCGGY	1 cut(s)	425
BsrI	ACTGG	1 cut(s)	511
BssAI	RCCGGY	1 cut(s)	425
BssECI	CCNNGG	4 cut(s)	51, 231, 298, 720
BssMI	GATC	9 cut(s)	63, 249, 323, 399, 420, 468, 475, 549, 877
BssSI	CACGAG	1 cut(s)	494
Bst2BI	CACGAG	1 cut(s)	494
Bst2UI	CCWGG	1 cut(s)	53
Bst4CI	ACNGT	1 cut(s)	184
Bst6I	CTCTTC	2 cut(s)	461, 666
BstC8I	GCNNGC	2 cut(s)	427, 611
BstDEI	CTNAG	3 cut(s)	638, 645, 696
BstFNI	CGCG	4 cut(s)	348, 504, 529, 596
BstHHI	GCGC	3 cut(s)	506, 531, 596
BstKTI	GATC	9 cut(s)	66, 252, 326, 402, 423, 471, 478, 552, 880
BstMAI	GTCTC	1 cut(s)	364
BstMBI	GATC	9 cut(s)	63, 249, 323, 399, 420, 468, 475, 549, 877
BstMCI	CGRYCG	3 cut(s)	316, 423, 552
BstMWI	GCNNNNNNNGC	5 cut(s)	120, 591, 600, 634, 914
BstNI	CCWGG	1 cut(s)	53
BstSCI	CCNGG	1 cut(s)	51
BstUI	CGCG	4 cut(s)	348, 504, 529, 596
BstV1I	GCAGC	1 cut(s)	892
BstV2I	GAAGAC	2 cut(s)	18, 698
BstX2I	RGATCY	2 cut(s)	249, 323
BstYI	RGATCY	2 cut(s)	249, 323
BstZI	CGGCCG	1 cut(s)	313
Bsu15I	ATCGAT	1 cut(s)	548
BsuRI	GGCC	6 cut(s)	45, 56, 114, 315, 585, 719
BsuTUI	ATCGAT	1 cut(s)	548
BtgZI	GCGATG	1 cut(s)	160
BtrI	CACGTC	1 cut(s)	118
Cac8I	GCNNGC	2 cut(s)	427, 611
CfoI	GCGC	3 cut(s)	506, 531, 596
Cfr10I	RCCGGY	1 cut(s)	425
Cfr13I	GGNCC	4 cut(s)	44, 519, 569, 717
ClaI	ATCGAT	1 cut(s)	548
CpoI	CGGWCCG	2 cut(s)	519, 569
Csp6I	GTAC	2 cut(s)	499, 898
CspI	CGGWCCG	2 cut(s)	519, 569
CviAII	CATG	1 cut(s)	61
CviQI	GTAC	2 cut(s)	499, 898
DdeI	CTNAG	3 cut(s)	638, 645, 696
DpnI	GATC	9 cut(s)	65, 251, 325, 401, 422, 470, 477, 551, 879
DpnII	GATC	9 cut(s)	63, 249, 323, 399, 420, 468, 475, 549, 877
DrdI	GACNNNNNNGTC	1 cut(s)	20
DseDI	GACNNNNNNGTC	1 cut(s)	20
EaeI	YGGCCR	2 cut(s)	112, 313
EagI	CGGCCG	1 cut(s)	313
Eam1104I	CTCTTC	2 cut(s)	461, 666
EarI	CTCTTC	2 cut(s)	461, 666
EciI	GGCGGA	2 cut(s)	248, 402
EclXI	CGGCCG	1 cut(s)	313
Eco47I	GGWCC	2 cut(s)	519, 569
Eco52I	CGGCCG	1 cut(s)	313
Eco88I	CYCGRG	1 cut(s)	232
EcoRI	GAATTC	1 cut(s)	350
EcoRII	CCWGG	1 cut(s)	51
Esp3I	CGTCTC	1 cut(s)	364
FaeI	CATG	1 cut(s)	64
FaiI	YATR	4 cut(s)	62, 713, 801, 882
FaqI	GGGAC	1 cut(s)	321
FatI	CATG	1 cut(s)	60
FauI	CCCGC	3 cut(s)	25, 55, 92
FblI	GTMKAC	2 cut(s)	96, 243
Fnu4HI	GCNGC	6 cut(s)	262, 316, 319, 416, 768, 906
Fsp4HI	GCNGC	6 cut(s)	262, 316, 319, 416, 768, 906
FspBI	CTAG	3 cut(s)	384, 834, 909
GlaI	GCGC	3 cut(s)	505, 530, 595
GluI	GCNGC	6 cut(s)	262, 316, 319, 416, 768, 906
GsaI	CCCAGC	1 cut(s)	609
HaeIII	GGCC	6 cut(s)	45, 56, 114, 315, 585, 719
HapII	CCGG	5 cut(s)	312, 426, 517, 572, 620
HhaI	GCGC	3 cut(s)	506, 531, 596
Hin1II	CATG	1 cut(s)	64
Hin6I	GCGC	3 cut(s)	504, 529, 594
HinP1I	GCGC	3 cut(s)	504, 529, 594
HincII	GTYRAC	3 cut(s)	97, 244, 562
HindII	GTYRAC	3 cut(s)	97, 244, 562
HinfI	GANTC	3 cut(s)	152, 694, 862
HpaII	CCGG	5 cut(s)	312, 426, 517, 572, 620
HphI	GGTGA	3 cut(s)	178, 463, 745
Hpy166II	GTNNAC	3 cut(s)	97, 244, 562
Hpy188I	TCNGA	4 cut(s)	145, 468, 480, 699
Hpy188III	TCNNGA	5 cut(s)	25, 397, 494, 517, 866
Hpy8I	GTNNAC	3 cut(s)	97, 244, 562
Hpy99I	CGWCG	5 cut(s)	26, 98, 101, 149, 152
HpyAV	CCTTC	2 cut(s)	202, 229
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	5 cut(s)	120, 591, 600, 634, 914
HpyF3I	CTNAG	3 cut(s)	638, 645, 696
HpySE526I	ACGT	1 cut(s)	117
Hsp92II	CATG	1 cut(s)	64
HspAI	GCGC	3 cut(s)	504, 529, 594
Kpn2I	TCCGGA	1 cut(s)	516
KroI	GCCGGC	1 cut(s)	425
KroNI	GCCGGC	1 cut(s)	427
Kzo9I	GATC	9 cut(s)	63, 249, 323, 399, 420, 468, 475, 549, 877
LmnI	GCTCC	2 cut(s)	92, 206
Lsp1109I	GCAGC	1 cut(s)	892
LweI	GCATC	1 cut(s)	798
MaeI	CTAG	3 cut(s)	384, 834, 909
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	2 cut(s)	184, 773
MalI	GATC	9 cut(s)	65, 251, 325, 401, 422, 470, 477, 551, 879
MbiI	CCGCTC	1 cut(s)	87
MboI	GATC	9 cut(s)	63, 249, 323, 399, 420, 468, 475, 549, 877
MboII	GAAGA	8 cut(s)	23, 187, 448, 683, 703, 829, 871, 887
MflI	RGATCY	2 cut(s)	249, 323
MlsI	TGGCCA	1 cut(s)	114
MluCI	AATT	2 cut(s)	350, 794
MluNI	TGGCCA	1 cut(s)	114
MlyI	GAGTC	1 cut(s)	688
MmeI	TCCRAC	4 cut(s)	91, 168, 387, 402
Mox20I	TGGCCA	1 cut(s)	114
MreI	CGCCGGCG	1 cut(s)	425
MroI	TCCGGA	1 cut(s)	516
MroNI	GCCGGC	1 cut(s)	425
MscI	TGGCCA	1 cut(s)	114
MseI	TTAA	1 cut(s)	104
Msp20I	TGGCCA	1 cut(s)	114
MspI	CCGG	5 cut(s)	312, 426, 517, 572, 620
MspR9I	CCNGG	1 cut(s)	53
MvaI	CCWGG	1 cut(s)	53
MvnI	CGCG	4 cut(s)	348, 504, 529, 596
MwoI	GCNNNNNNNGC	5 cut(s)	120, 591, 600, 634, 914
NaeI	GCCGGC	1 cut(s)	427
NdeII	GATC	9 cut(s)	63, 249, 323, 399, 420, 468, 475, 549, 877
NgoMIV	GCCGGC	1 cut(s)	425
NlaIII	CATG	1 cut(s)	64
NlaIV	GGNNCC	1 cut(s)	46
NmeAIII	GCCGAG	2 cut(s)	279, 745
NmuCI	GTSAC	1 cut(s)	184
PcsI	WCGNNNNNNNCGW	1 cut(s)	539
PdiI	GCCGGC	1 cut(s)	427
PfeI	GAWTC	2 cut(s)	152, 862
PflFI	GACNNNGTC	1 cut(s)	557
PkrI	GCNGC	6 cut(s)	263, 317, 320, 417, 769, 907
Ple19I	CGATCG	2 cut(s)	423, 552
PleI	GAGTC	1 cut(s)	688
PpsI	GAGTC	1 cut(s)	688
Psp6I	CCWGG	1 cut(s)	51
PspFI	CCCAGC	1 cut(s)	605
PspGI	CCWGG	1 cut(s)	51
PspN4I	GGNNCC	1 cut(s)	46
PspPI	GGNCC	4 cut(s)	44, 519, 569, 717
PsuI	RGATCY	2 cut(s)	249, 323
PsyI	GACNNNGTC	1 cut(s)	557
PvuI	CGATCG	2 cut(s)	423, 552
RsaI	GTAC	2 cut(s)	500, 899
RsaNI	GTAC	2 cut(s)	499, 898
Rsr2I	CGGWCCG	2 cut(s)	519, 569
RsrII	CGGWCCG	2 cut(s)	519, 569
SalI	GTCGAC	2 cut(s)	95, 242
SaqAI	TTAA	1 cut(s)	104
SatI	GCNGC	6 cut(s)	262, 316, 319, 416, 768, 906
Sau3AI	GATC	9 cut(s)	63, 249, 323, 399, 420, 468, 475, 549, 877
Sau96I	GGNCC	4 cut(s)	44, 519, 569, 717
SchI	GAGTC	1 cut(s)	688
ScrFI	CCNGG	1 cut(s)	53
SfaNI	GCATC	1 cut(s)	798
SgrAI	CRCCGGYG	1 cut(s)	425
SgrDI	CGTCGACG	1 cut(s)	95
SinI	GGWCC	2 cut(s)	519, 569
SmlI	CTYRAG	1 cut(s)	742
SmoI	CTYRAG	1 cut(s)	742
Sse9I	AATT	2 cut(s)	350, 794
SspMI	CTAG	3 cut(s)	384, 834, 909
StyD4I	CCNGG	1 cut(s)	51
TaaI	ACNGT	1 cut(s)	184
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	8 cut(s)	24, 96, 243, 537, 548, 552, 580, 865
TaqII	GACCGA	1 cut(s)	557
TasI	AATT	2 cut(s)	350, 794
TauI	GCSGC	5 cut(s)	264, 318, 321, 418, 770
TfiI	GAWTC	2 cut(s)	152, 862
Tru1I	TTAA	1 cut(s)	104
Tru9I	TTAA	1 cut(s)	104
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	1 cut(s)	905
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	1 cut(s)	668
TspGWI	ACGGA	2 cut(s)	82, 323
Tth111I	GACNNNGTC	1 cut(s)	557
VpaK11BI	GGWCC	2 cut(s)	519, 569
XapI	RAATTY	1 cut(s)	350
XmiI	GTMKAC	2 cut(s)	96, 243
XspI	CTAG	3 cut(s)	384, 834, 909

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.