Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0007096

Physical Location & Seq

Genomic Coordinates Reverse (-)

40219019 .. 40220647

Gene Structure 1629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024907

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGAAGATCCTTCTCTAGAGAAAATCGCAATCTCCGGCCCAGCCCTGGCCTCTATGATCCAACGCTTCTCCACCTCCCGCGGCGCCGTCGATGGCTTAATCTTCGGCCACGTCAGCCTCATCGCCCCCACTCTCTCCAACGACGATTCTTCCTCCTCCTCCACCCTCTCCTTCTACACCCCCTCGGGTTGGGTCAACCCGCTCCTCCTCTGCCGCCTCACCCAGCCCCAACCCCCCTCCTTCCACCTCCTCGGCTGGTTCTCCGGCCGTCGCAGAACCCACCTCCGACCCTCCTTACTCGAATTTGCCGTCTCCAACTCTCTAATCTCCAACCCAAACCTCACCTTCCCAATCCAAAACTCTCCGGCGCCGATCGCCGTCAATCTCAAACCCTGCCTCTTCTTCCTCTTCGCTTCCCCTGGTGAAGATGCGCCAAATGACGGTGAGTTACCTTCGCTGGAAAAGCGGATCCTAACGATCTTGGACATAACCGTTGATGACCTCGAGATCCGGAGCTTGGCCGGTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

177

Amino Acids

19.14

Weight (kDa)

5.26

Isoelectric Point (pI)

56.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08780 AT3G08780
fragaria_vesca	FvH4_6g10650 FvH4_6g10650 FvH4_6g10650 FvH4_6g10650
malus_domestica	MD04G1166100.v1.1 MD04G1166200.v1.1
prunus_persica	Prupe.6G284500_v2.0.a1
pyrus_communis	pycom04g14770
rosa_chinensis	RchiOBHm_Chr3g0461671
rosa_laevigata	RLG00000024906 RLG00000024907
rosa_multiflora	Rmu_sc0012406.1_g000006 Rmu_sc0038320.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332550 Rroxscaffold_6G00418050
rosa_rugosa	Rorug03G0052800 Rorug03G0052900 Rorug03G0053000 Rorug03G0053000
rosa_samantha	Rh3BG114100 Rh3CG116200 Rh3DG116000
rosa_wichuraiana	Rw3G009400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	83, 367
AccBSI	CCGCTC	1 cut(s)	202
AccII	CGCG	1 cut(s)	81
AccIII	TCCGGA	1 cut(s)	510
AciI	CCGC	5 cut(s)	79, 81, 200, 214, 466
AclWI	GGATC	5 cut(s)	2, 52, 463, 476, 502
AcoI	YGGCCR	3 cut(s)	106, 265, 519
AcsI	RAATTY	1 cut(s)	302
AcyI	GRCGYC	2 cut(s)	84, 368
AfiI	CCNNNNNNNGG	4 cut(s)	46, 189, 440, 517
AjiI	CACGTC	1 cut(s)	112
AjnI	CCWGG	2 cut(s)	45, 418
AluBI	AGCT	1 cut(s)	516
AluI	AGCT	1 cut(s)	516
Alw26I	GTCTC	1 cut(s)	316
AlwI	GGATC	5 cut(s)	2, 52, 463, 476, 502
Ama87I	CYCGRG	2 cut(s)	184, 503
Aor13HI	TCCGGA	1 cut(s)	510
AoxI	GGCC	5 cut(s)	37, 48, 106, 265, 519
ApoI	RAATTY	1 cut(s)	302
ArsI	GACNNNNNNTTYG	2 cut(s)	294, 326
AspLEI	GCGC	3 cut(s)	86, 370, 433
AspS9I	GGNCC	1 cut(s)	38
AsuHPI	GGTGA	4 cut(s)	211, 334, 434, 455
AvaI	CYCGRG	2 cut(s)	184, 503
BamHI	GGATCC	1 cut(s)	468
BanI	GGYRCC	2 cut(s)	83, 367
BccI	CCATC	1 cut(s)	86
BceAI	ACGGC	4 cut(s)	71, 252, 293, 362
BciT130I	CCWGG	2 cut(s)	47, 420
BcoDI	GTCTC	1 cut(s)	316
BfaI	CTAG	1 cut(s)	17
BfoI	RGCGCY	2 cut(s)	87, 371
BisI	GCNGC	2 cut(s)	82, 214
BlsI	GCNGC	2 cut(s)	83, 215
Bme1390I	CCNGG	2 cut(s)	47, 420
BmeT110I	CYCGRG	2 cut(s)	184, 503
BmgBI	CACGTC	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	38
BmiI	GGNNCC	3 cut(s)	85, 369, 470
BmrFI	CCNGG	2 cut(s)	47, 420
BmsI	GCATC	1 cut(s)	418
BsaHI	GRCGYC	2 cut(s)	84, 368
BsaJI	CCNNGG	5 cut(s)	45, 79, 183, 250, 418
BsaWI	WCCGGW	1 cut(s)	510
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 189, 440, 517
Bse118I	RCCGGY	1 cut(s)	521
BseAI	TCCGGA	1 cut(s)	510
BseBI	CCWGG	2 cut(s)	47, 420
BseDI	CCNNGG	5 cut(s)	45, 79, 183, 250, 418
BseLI	CCNNNNNNNGG	4 cut(s)	46, 189, 440, 517
BseRI	GAGGAG	5 cut(s)	145, 148, 194, 197, 239
BseX3I	CGGCCG	1 cut(s)	265
BseYI	CCCAGC	2 cut(s)	40, 222
Bsh1236I	CGCG	1 cut(s)	81
Bsh1285I	CGRYCG	2 cut(s)	268, 375
BshFI	GGCC	5 cut(s)	39, 50, 108, 267, 521
BshNI	GGYRCC	2 cut(s)	83, 367
BsiEI	CGRYCG	2 cut(s)	268, 375
BsiHKCI	CYCGRG	2 cut(s)	184, 503
BsiSI	CCGG	5 cut(s)	36, 264, 365, 511, 522
BslI	CCNNNNNNNGG	4 cut(s)	46, 189, 440, 517
BsmAI	GTCTC	1 cut(s)	316
BsmBI	CGTCTC	1 cut(s)	316
BsnI	GGCC	5 cut(s)	39, 50, 108, 267, 521
BsoBI	CYCGRG	2 cut(s)	184, 503
Bsp13I	TCCGGA	1 cut(s)	510
Bsp143I	GATC	6 cut(s)	7, 57, 372, 468, 477, 507
BspACI	CCGC	5 cut(s)	79, 81, 200, 214, 466
BspANI	GGCC	5 cut(s)	39, 50, 108, 267, 521
BspEI	TCCGGA	1 cut(s)	510
BspFNI	CGCG	1 cut(s)	81
BspLI	GGNNCC	3 cut(s)	85, 369, 470
BspPI	GGATC	5 cut(s)	2, 52, 463, 476, 502
BspT107I	GGYRCC	2 cut(s)	83, 367
BsrBI	CCGCTC	1 cut(s)	202
BsrFI	RCCGGY	1 cut(s)	521
BssAI	RCCGGY	1 cut(s)	521
BssECI	CCNNGG	5 cut(s)	45, 79, 183, 250, 418
BssMI	GATC	6 cut(s)	7, 57, 372, 468, 477, 507
BssNI	GRCGYC	2 cut(s)	84, 368
Bst2UI	CCWGG	2 cut(s)	47, 420
Bst4CI	ACNGT	2 cut(s)	443, 493
Bst6I	CTCTTC	2 cut(s)	404, 413
BstACI	GRCGYC	2 cut(s)	84, 368
BstDSI	CCRYGG	1 cut(s)	79
BstFNI	CGCG	1 cut(s)	81
BstH2I	RGCGCY	2 cut(s)	87, 371
BstHHI	GCGC	3 cut(s)	86, 370, 433
BstKTI	GATC	6 cut(s)	10, 60, 375, 471, 480, 510
BstMAI	GTCTC	1 cut(s)	316
BstMBI	GATC	6 cut(s)	7, 57, 372, 468, 477, 507
BstMCI	CGRYCG	2 cut(s)	268, 375
BstMWI	GCNNNNNNNGC	3 cut(s)	114, 374, 463
BstNI	CCWGG	2 cut(s)	47, 420
BstSCI	CCNGG	2 cut(s)	45, 418
BstUI	CGCG	1 cut(s)	81
BstX2I	RGATCY	3 cut(s)	7, 468, 507
BstYI	RGATCY	3 cut(s)	7, 468, 507
BstZI	CGGCCG	1 cut(s)	265
BsuRI	GGCC	5 cut(s)	39, 50, 108, 267, 521
BtgI	CCRYGG	1 cut(s)	79
BtgZI	GCGATG	1 cut(s)	106
BtrI	CACGTC	1 cut(s)	112
CfoI	GCGC	3 cut(s)	86, 370, 433
Cfr10I	RCCGGY	1 cut(s)	521
Cfr13I	GGNCC	1 cut(s)	38
Cfr42I	CCGCGG	1 cut(s)	82
DinI	GGCGCC	2 cut(s)	85, 369
DpnI	GATC	6 cut(s)	9, 59, 374, 470, 479, 509
DpnII	GATC	6 cut(s)	7, 57, 372, 468, 477, 507
EaeI	YGGCCR	3 cut(s)	106, 265, 519
EagI	CGGCCG	1 cut(s)	265
Eam1104I	CTCTTC	2 cut(s)	404, 413
EarI	CTCTTC	2 cut(s)	404, 413
EclXI	CGGCCG	1 cut(s)	265
Eco52I	CGGCCG	1 cut(s)	265
Eco88I	CYCGRG	2 cut(s)	184, 503
EcoRII	CCWGG	2 cut(s)	45, 418
EgeI	GGCGCC	2 cut(s)	85, 369
EheI	GGCGCC	2 cut(s)	85, 369
Esp3I	CGTCTC	1 cut(s)	316
FaiI	YATR	2 cut(s)	56, 488
FauI	CCCGC	2 cut(s)	86, 207
Fnu4HI	GCNGC	2 cut(s)	82, 214
Fsp4HI	GCNGC	2 cut(s)	82, 214
FspBI	CTAG	1 cut(s)	17
GlaI	GCGC	3 cut(s)	85, 369, 432
GluI	GCNGC	2 cut(s)	82, 214
GsaI	CCCAGC	2 cut(s)	44, 226
HaeII	RGCGCY	2 cut(s)	87, 371
HaeIII	GGCC	5 cut(s)	39, 50, 108, 267, 521
HapII	CCGG	5 cut(s)	36, 264, 365, 511, 522
HhaI	GCGC	3 cut(s)	86, 370, 433
Hin1I	GRCGYC	2 cut(s)	84, 368
Hin6I	GCGC	3 cut(s)	84, 368, 431
HinP1I	GCGC	3 cut(s)	84, 368, 431
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	1 cut(s)	146
HpaII	CCGG	5 cut(s)	36, 264, 365, 511, 522
HphI	GGTGA	4 cut(s)	211, 334, 434, 455
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	1 cut(s)	287
Hpy188III	TCNNGA	3 cut(s)	17, 505, 511
Hpy8I	GTNNAC	1 cut(s)	196
Hpy99I	CGWCG	3 cut(s)	92, 146, 273
HpyAV	CCTTC	5 cut(s)	21, 181, 250, 355, 462
HpyCH4III	ACNGT	2 cut(s)	443, 493
HpyCH4IV	ACGT	1 cut(s)	111
HpyF10VI	GCNNNNNNNGC	3 cut(s)	114, 374, 463
HpySE526I	ACGT	1 cut(s)	111
Hsp92I	GRCGYC	2 cut(s)	84, 368
HspAI	GCGC	3 cut(s)	84, 368, 431
KasI	GGCGCC	2 cut(s)	83, 367
Kpn2I	TCCGGA	1 cut(s)	510
KspI	CCGCGG	1 cut(s)	82
Kzo9I	GATC	6 cut(s)	7, 57, 372, 468, 477, 507
LmnI	GCTCC	2 cut(s)	207, 513
LweI	GCATC	1 cut(s)	418
MaeI	CTAG	1 cut(s)	17
MaeII	ACGT	1 cut(s)	111
MaeIII	GTNAC	1 cut(s)	447
MalI	GATC	6 cut(s)	9, 59, 374, 470, 479, 509
MbiI	CCGCTC	1 cut(s)	202
MboI	GATC	6 cut(s)	7, 57, 372, 468, 477, 507
MboII	GAAGA	7 cut(s)	17, 94, 141, 391, 394, 400, 437
MflI	RGATCY	3 cut(s)	7, 468, 507
MluCI	AATT	1 cut(s)	302
Mly113I	GGCGCC	2 cut(s)	84, 368
MmeI	TCCRAC	5 cut(s)	85, 162, 310, 339, 354
MroI	TCCGGA	1 cut(s)	510
MseI	TTAA	1 cut(s)	98
MspA1I	CMGCKG	1 cut(s)	81
MspI	CCGG	5 cut(s)	36, 264, 365, 511, 522
MspR9I	CCNGG	2 cut(s)	47, 420
MvaI	CCWGG	2 cut(s)	47, 420
MvnI	CGCG	1 cut(s)	81
MwoI	GCNNNNNNNGC	3 cut(s)	114, 374, 463
NarI	GGCGCC	2 cut(s)	84, 368
NdeII	GATC	6 cut(s)	7, 57, 372, 468, 477, 507
NlaIV	GGNNCC	3 cut(s)	85, 369, 470
NmeAIII	GCCGAG	1 cut(s)	231
PaeR7I	CTCGAG	1 cut(s)	503
PcsI	WCGNNNNNNNCGW	1 cut(s)	306
PfeI	GAWTC	1 cut(s)	146
PkrI	GCNGC	2 cut(s)	83, 215
Ple19I	CGATCG	1 cut(s)	375
PluTI	GGCGCC	2 cut(s)	87, 371
Psp6I	CCWGG	2 cut(s)	45, 418
PspFI	CCCAGC	2 cut(s)	40, 222
PspGI	CCWGG	2 cut(s)	45, 418
PspN4I	GGNNCC	3 cut(s)	85, 369, 470
PspPI	GGNCC	1 cut(s)	38
PsuI	RGATCY	3 cut(s)	7, 468, 507
PvuI	CGATCG	1 cut(s)	375
SacII	CCGCGG	1 cut(s)	82
SaqAI	TTAA	1 cut(s)	98
SatI	GCNGC	2 cut(s)	82, 214
Sau3AI	GATC	6 cut(s)	7, 57, 372, 468, 477, 507
Sau96I	GGNCC	1 cut(s)	38
ScrFI	CCNGG	2 cut(s)	47, 420
SetI	ASST	9 cut(s)	77, 114, 249, 285, 342, 347, 454, 504, 518
SfaNI	GCATC	1 cut(s)	418
SfoI	GGCGCC	2 cut(s)	85, 369
Sfr274I	CTCGAG	1 cut(s)	503
Sfr303I	CCGCGG	1 cut(s)	82
SgrBI	CCGCGG	1 cut(s)	82
SlaI	CTCGAG	1 cut(s)	503
SmlI	CTYRAG	1 cut(s)	503
SmoI	CTYRAG	1 cut(s)	503
Sse9I	AATT	1 cut(s)	302
SsiI	CCGC	5 cut(s)	79, 81, 200, 214, 466
SspDI	GGCGCC	2 cut(s)	83, 367
SspMI	CTAG	1 cut(s)	17
StyD4I	CCNGG	2 cut(s)	45, 418
TaaI	ACNGT	2 cut(s)	443, 493
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	3 cut(s)	90, 300, 504
TasI	AATT	1 cut(s)	302
TauI	GCSGC	2 cut(s)	84, 216
TfiI	GAWTC	1 cut(s)	146
Tru1I	TTAA	1 cut(s)	98
Tru9I	TTAA	1 cut(s)	98
XapI	RAATTY	1 cut(s)	302
XbaI	TCTAGA	1 cut(s)	16
XhoI	CTCGAG	1 cut(s)	503
XspI	CTAG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.